FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB5445, 271 aa
  1>>>pF1KB5445 271 - 271 aa - 271 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.2512+/-0.000716; mu= 13.2827+/- 0.044
 mean_var=112.9768+/-22.090, 0's: 0 Z-trim(113.6): 4  B-trim: 0 in 0/51
 Lambda= 0.120665
 statistics sampled from 14226 (14229) to 14226 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.768), E-opt: 0.2 (0.437), width:  16
 Scan time:  2.750

The best scores are:                                      opt bits E(32554)
CCDS6942.1 PLPP7 gene_id:84814|Hs108|chr9          ( 271) 1798 322.8 1.6e-88
CCDS34981.1 PLPP6 gene_id:403313|Hs108|chr9        ( 295)  829 154.1   1e-37


>>CCDS6942.1 PLPP7 gene_id:84814|Hs108|chr9               (271 aa)
 initn: 1798 init1: 1798 opt: 1798  Z-score: 1702.6  bits: 322.8 E(32554): 1.6e-88
Smith-Waterman score: 1798; 99.6% identity (99.6% similar) in 271 aa overlap (1-271:1-271)

               10        20        30        40        50        60
pF1KB5 MPASQSRARARDRNNVLNRAEFLSLNQPPKGGPEPRSSGRKASGPSAQPPPAGDGARERR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 MPASQSRARARDRNNVLNRAEFLSLNQPPKGGPEPRSSGRKASGPSAQPPPAGDGARERR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 QSQQLPEEDCMQLNPSFKGIAFNSLLAIDICMSKRLGVCAGRAASWASARSMVKLIGITG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 QSQQLPEEDCMQLNPSFKGIAFNSLLAIDICMSKRLGVCAGRAASWASARSMVKLIGITG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB5 HGIPWIGGTILCLVKSSTLAGQEVLMNLLLALLLDIMTVAGVQKLIKRRGPYEMSPSLLD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::: ::::::
CCDS69 HGIPWIGGTILCLVKSSTLAGQEVLMNLLLALLLDIMTVAGVQKLIKRRGPYETSPSLLD
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB5 YLTMDIYAFPAGHASRAAMVSKFFLSHLVLAVPLRVLLVLWALCVGLSRVMIGRHHVTDV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 YLTMDIYAFPAGHASRAAMVSKFFLSHLVLAVPLRVLLVLWALCVGLSRVMIGRHHVTDV
              190       200       210       220       230       240

              250       260       270 
pF1KB5 LSGFVIGYLQFRLVELVWMPSSTCQMLISAW
       :::::::::::::::::::::::::::::::
CCDS69 LSGFVIGYLQFRLVELVWMPSSTCQMLISAW
              250       260       270 

>>CCDS34981.1 PLPP6 gene_id:403313|Hs108|chr9             (295 aa)
 initn: 827 init1: 808 opt: 829  Z-score: 790.4  bits: 154.1 E(32554): 1e-37
Smith-Waterman score: 832; 49.6% identity (73.7% similar) in 266 aa overlap (6-271:46-292)

                                        10        20        30     
pF1KB5                          MPASQSRARARDRNNVLNRAEFLSLNQPPKGGPEP
                                     ::: : : . .  ::   : .   . :  :
CCDS34 SASSSSSSPGSPAHGGGGGGSRFEFQSLLSSRATAVDPTCARLRA---SESPVHRRGSFP
          20        30        40        50        60           70  

          40        50        60        70        80        90     
pF1KB5 RSSGRKASGPSAQPPPAGDGARERRQSQQLPEEDCMQLNPSFKGIAFNSLLAIDICMSKR
        .    :.::: .: :             ::::: :.::::: :::. ::::::. .::.
CCDS34 LA----AAGPSQSPAPP------------LPEEDRMDLNPSFLGIALRSLLAIDLWLSKK
                 80                    90       100       110      

         100       110       120       130       140       150     
pF1KB5 LGVCAGRAASWASARSMVKLIGITGHGIPWIGGTILCLVKSSTLAGQEVLMNLLLALLLD
       ::::::...::.:.: ..::. :.::::::. ::. :: .:.. ::.:::::::.:::::
CCDS34 LGVCAGESSSWGSVRPLMKLLEISGHGIPWLLGTLYCLCRSDSWAGREVLMNLLFALLLD
        120       130       140       150       160       170      

         160       170       180       190       200       210     
pF1KB5 IMTVAGVQKLIKRRGPYEMSPSLLDYLTMDIYAFPAGHASRAAMVSKFFLSHLVLAVPLR
       .. :: .. :..:: : . . ...  :..: :.::.:::.:::..:.:.:.:::::.:::
CCDS34 LLLVALIKGLVRRRRPAHNQMDMFVTLSVDKYSFPSGHATRAALMSRFILNHLVLAIPLR
        180       190       200       210       220       230      

         220       230       240       250       260       270    
pF1KB5 VLLVLWALCVGLSRVMIGRHHVTDVLSGFVIGYLQFRLVELVWMPSSTCQMLISAW   
       ::.::::. .::::::.:::.::::  :: .::.:. .:.  :.   .  .:.  :   
CCDS34 VLVVLWAFVLGLSRVMLGRHNVTDVAFGFFLGYMQYSIVDYCWLSPHNAPVLFLLWSQR
        240       250       260       270       280       290     




271 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 22:33:12 2016 done: Thu Nov  3 22:33:13 2016
 Total Scan time:  2.750 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]