Result of FASTA (ccds) for
pF1KB5441
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB5441, 339 aa
1>>>pF1KB5441 339 - 339 aa - 339 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.3672+/-0.00078; mu= 16.5890+/- 0.047
mean_var=86.0078+/-16.584, 0's: 0 Z-trim(110.2): 23 B-trim: 7 in 1/52
Lambda= 0.138295
statistics sampled from 11437 (11454) to 11437 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.722), E-opt: 0.2 (0.352), width: 16
Scan time: 2.660
The best scores are: opt bits E(32554)
CCDS5986.1 CTSB gene_id:1508|Hs108|chr8 ( 339) 2474 503.2 1.2e-142
CCDS72745.1 TINAGL1 gene_id:64129|Hs108|chr1 ( 362) 412 91.8 9.1e-19
CCDS55586.1 TINAGL1 gene_id:64129|Hs108|chr1 ( 436) 412 91.9 1e-18
CCDS343.1 TINAGL1 gene_id:64129|Hs108|chr1 ( 467) 412 91.9 1.1e-18
CCDS8282.1 CTSC gene_id:1075|Hs108|chr11 ( 463) 323 74.2 2.4e-13
>>CCDS5986.1 CTSB gene_id:1508|Hs108|chr8 (339 aa)
initn: 2474 init1: 2474 opt: 2474 Z-score: 2674.2 bits: 503.2 E(32554): 1.2e-142
Smith-Waterman score: 2474; 100.0% identity (100.0% similar) in 339 aa overlap (1-339:1-339)
10 20 30 40 50 60
pF1KB5 MWQLWASLCCLLVLANARSRPSFHPLSDELVNYVNKRNTTWQAGHNFYNVDMSYLKRLCG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 MWQLWASLCCLLVLANARSRPSFHPLSDELVNYVNKRNTTWQAGHNFYNVDMSYLKRLCG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 TFLGGPKPPQRVMFTEDLKLPASFDAREQWPQCPTIKEIRDQGSCGSCWAFGAVEAISDR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 TFLGGPKPPQRVMFTEDLKLPASFDAREQWPQCPTIKEIRDQGSCGSCWAFGAVEAISDR
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB5 ICIHTNAHVSVEVSAEDLLTCCGSMCGDGCNGGYPAEAWNFWTRKGLVSGGLYESHVGCR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 ICIHTNAHVSVEVSAEDLLTCCGSMCGDGCNGGYPAEAWNFWTRKGLVSGGLYESHVGCR
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB5 PYSIPPCEHHVNGSRPPCTGEGDTPKCSKICEPGYSPTYKQDKHYGYNSYSVSNSEKDIM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 PYSIPPCEHHVNGSRPPCTGEGDTPKCSKICEPGYSPTYKQDKHYGYNSYSVSNSEKDIM
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB5 AEIYKNGPVEGAFSVYSDFLLYKSGVYQHVTGEMMGGHAIRILGWGVENGTPYWLVANSW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 AEIYKNGPVEGAFSVYSDFLLYKSGVYQHVTGEMMGGHAIRILGWGVENGTPYWLVANSW
250 260 270 280 290 300
310 320 330
pF1KB5 NTDWGDNGFFKILRGQDHCGIESEVVAGIPRTDQYWEKI
:::::::::::::::::::::::::::::::::::::::
CCDS59 NTDWGDNGFFKILRGQDHCGIESEVVAGIPRTDQYWEKI
310 320 330
>>CCDS72745.1 TINAGL1 gene_id:64129|Hs108|chr1 (362 aa)
initn: 536 init1: 144 opt: 412 Z-score: 450.4 bits: 91.8 E(32554): 9.1e-19
Smith-Waterman score: 583; 33.0% identity (59.3% similar) in 327 aa overlap (29-326:40-348)
10 20 30 40 50
pF1KB5 MWQLWASLCCLLVLANARSRPSFHPLSDELVNYVNKRNTTWQAGHN--FYNVDMSYLK
.... .:. : ::::.. :... ..
CCDS72 LGTYWDNCNRCTCQENRQWQCDQEPCLVDPDMIKAINQGNYGWQAGNHSAFWGMTLDEGI
10 20 30 40 50 60
60 70 80 90 100
pF1KB5 RLCGTFLGGPKPPQRVMFTEDLK--------LPASFDAREQWPQCPTIKEIRDQGSCGSC
: :: .: . :: ... ::..:.: :.::. :.: :::.:..
CCDS72 RY---RLGTIRPSSSVMNMHEIYTVLNPGEVLPTAFEASEKWPN--LIHEPLDQGNCAGS
70 80 90 100 110 120
110 120 130 140 150 160
pF1KB5 WAFGAVEAISDRICIHTNAHVSVEVSAEDLLTCCGSMCGDGCNGGYPAEAWNFWTRKGLV
:::... . :::. ::. .:.. .: ..::.: . .:: :: :: : :.:.:
CCDS72 WAFSTAAVASDRVSIHSLGHMTPVLSPQNLLSC-DTHQQQGCRGGRLDGAWWFLRRRGVV
130 140 150 160 170 180
170 180 190 200 210 220
pF1KB5 SGGLYESHVGCRPYSIPPCEHHVNGSRPPCT------GEGDTPKCSKICEPGYSPTYKQD
: .: : :.: :. : ::: :.: . . : .: . ..:
CCDS72 S-----DH--CYPFS--GRERDEAGPAPPCMMHSRAMGRGKR-QATAHCPNSY--VNNND
190 200 210 220 230
230 240 250 260 270
pF1KB5 KHYGYNSYSVSNSEKDIMAEIYKNGPVEGAFSVYSDFLLYKSGVYQHVTGEM--------
. : .....:.:: :...::::.. . :. ::.:::.:.:.:. .
CCDS72 IYQVTPVYRLGSNDKEIMKELMENGPVQALMEVHEDFFLYKGGIYSHTPVSLGRPERYRR
240 250 260 270 280 290
280 290 300 310 320
pF1KB5 MGGHAIRILGWGVE---NGTP--YWLVANSWNTDWGDNGFFKILRGQDHCGIESEVVAGI
: :...: ::: : .: :: .::::. ::. : :.:.:: ..: ::: :.
CCDS72 HGTHSVKITGWGEETLPDGRTLKYWTAANSWGPAWGERGHFRIVRGVNECDIESFVLGVW
300 310 320 330 340 350
330
pF1KB5 PRTDQYWEKI
CCDS72 GRVGMEDMGHH
360
>>CCDS55586.1 TINAGL1 gene_id:64129|Hs108|chr1 (436 aa)
initn: 487 init1: 144 opt: 412 Z-score: 449.3 bits: 91.9 E(32554): 1e-18
Smith-Waterman score: 572; 33.4% identity (58.9% similar) in 326 aa overlap (30-326:115-422)
10 20 30 40 50
pF1KB5 MWQLWASLCCLLVLANARSRPSFHPLSDELVNYVNKRNTTWQAGHN--FYNVDMSYLKR
: .: .. : ::::.. :... .. :
CCDS55 CPDFWDFCLGVPPPFPPIQGCMHGGRIYPVLGTYWDNCNRCWQAGNHSAFWGMTLDEGIR
90 100 110 120 130 140
60 70 80 90 100
pF1KB5 LCGTFLGGPKPPQRVMFTEDLK--------LPASFDAREQWPQCPTIKEIRDQGSCGSCW
:: .: . :: ... ::..:.: :.::. :.: :::.:.. :
CCDS55 Y---RLGTIRPSSSVMNMHEIYTVLNPGEVLPTAFEASEKWPN--LIHEPLDQGNCAGSW
150 160 170 180 190
110 120 130 140 150 160
pF1KB5 AFGAVEAISDRICIHTNAHVSVEVSAEDLLTCCGSMCGDGCNGGYPAEAWNFWTRKGLVS
::... . :::. ::. .:.. .: ..::.: . .:: :: :: : :.:.::
CCDS55 AFSTAAVASDRVSIHSLGHMTPVLSPQNLLSC-DTHQQQGCRGGRLDGAWWFLRRRGVVS
200 210 220 230 240 250
170 180 190 200 210 220
pF1KB5 GGLYESHVGCRPYSIPPCEHHVNGSRPPCT------GEGDTPKCSKICEPGYSPTYKQDK
.: : :.: :. : ::: :.: . . : .: . ..:
CCDS55 -----DH--CYPFS--GRERDEAGPAPPCMMHSRAMGRGKR-QATAHCPNSY--VNNNDI
260 270 280 290 300
230 240 250 260 270
pF1KB5 HYGYNSYSVSNSEKDIMAEIYKNGPVEGAFSVYSDFLLYKSGVYQHVTGEM--------M
. : .....:.:: :...::::.. . :. ::.:::.:.:.:. .
CCDS55 YQVTPVYRLGSNDKEIMKELMENGPVQALMEVHEDFFLYKGGIYSHTPVSLGRPERYRRH
310 320 330 340 350 360
280 290 300 310 320 330
pF1KB5 GGHAIRILGWGVE---NGTP--YWLVANSWNTDWGDNGFFKILRGQDHCGIESEVVAGIP
: :...: ::: : .: :: .::::. ::. : :.:.:: ..: ::: :.
CCDS55 GTHSVKITGWGEETLPDGRTLKYWTAANSWGPAWGERGHFRIVRGVNECDIESFVLGVWG
370 380 390 400 410 420
pF1KB5 RTDQYWEKI
CCDS55 RVGMEDMGHH
430
>>CCDS343.1 TINAGL1 gene_id:64129|Hs108|chr1 (467 aa)
initn: 487 init1: 144 opt: 412 Z-score: 448.9 bits: 91.9 E(32554): 1.1e-18
Smith-Waterman score: 583; 33.0% identity (59.3% similar) in 327 aa overlap (29-326:145-453)
10 20 30 40 50
pF1KB5 MWQLWASLCCLLVLANARSRPSFHPLSDELVNYVNKRNTTWQAGHN--FYNVDMSYLK
.... .:. : ::::.. :... ..
CCDS34 LGTYWDNCNRCTCQENRQWQCDQEPCLVDPDMIKAINQGNYGWQAGNHSAFWGMTLDEGI
120 130 140 150 160 170
60 70 80 90 100
pF1KB5 RLCGTFLGGPKPPQRVMFTEDLK--------LPASFDAREQWPQCPTIKEIRDQGSCGSC
: :: .: . :: ... ::..:.: :.::. :.: :::.:..
CCDS34 RY---RLGTIRPSSSVMNMHEIYTVLNPGEVLPTAFEASEKWPN--LIHEPLDQGNCAGS
180 190 200 210 220
110 120 130 140 150 160
pF1KB5 WAFGAVEAISDRICIHTNAHVSVEVSAEDLLTCCGSMCGDGCNGGYPAEAWNFWTRKGLV
:::... . :::. ::. .:.. .: ..::.: . .:: :: :: : :.:.:
CCDS34 WAFSTAAVASDRVSIHSLGHMTPVLSPQNLLSC-DTHQQQGCRGGRLDGAWWFLRRRGVV
230 240 250 260 270 280
170 180 190 200 210 220
pF1KB5 SGGLYESHVGCRPYSIPPCEHHVNGSRPPCT------GEGDTPKCSKICEPGYSPTYKQD
: .: : :.: :. : ::: :.: . . : .: . ..:
CCDS34 S-----DH--CYPFS--GRERDEAGPAPPCMMHSRAMGRGKR-QATAHCPNSY--VNNND
290 300 310 320 330
230 240 250 260 270
pF1KB5 KHYGYNSYSVSNSEKDIMAEIYKNGPVEGAFSVYSDFLLYKSGVYQHVTGEM--------
. : .....:.:: :...::::.. . :. ::.:::.:.:.:. .
CCDS34 IYQVTPVYRLGSNDKEIMKELMENGPVQALMEVHEDFFLYKGGIYSHTPVSLGRPERYRR
340 350 360 370 380 390
280 290 300 310 320
pF1KB5 MGGHAIRILGWGVE---NGTP--YWLVANSWNTDWGDNGFFKILRGQDHCGIESEVVAGI
: :...: ::: : .: :: .::::. ::. : :.:.:: ..: ::: :.
CCDS34 HGTHSVKITGWGEETLPDGRTLKYWTAANSWGPAWGERGHFRIVRGVNECDIESFVLGVW
400 410 420 430 440 450
330
pF1KB5 PRTDQYWEKI
CCDS34 GRVGMEDMGHH
460
>>CCDS8282.1 CTSC gene_id:1075|Hs108|chr11 (463 aa)
initn: 391 init1: 183 opt: 323 Z-score: 353.0 bits: 74.2 E(32554): 2.4e-13
Smith-Waterman score: 469; 31.3% identity (57.0% similar) in 335 aa overlap (14-330:156-459)
10 20 30 40
pF1KB5 MWQLWASLCCLLVLANARSRPS--FHPLSDELVNYVNKRNTTW
: :.. . : .. . ..:. .: . .:
CCDS82 VHDVLGRNWACFTGKKVGTASENVYVNIAHLKNSQEKYSNRLYKYDHNFVKAINAIQKSW
130 140 150 160 170 180
50 60 70 80 90
pF1KB5 QAG--HNFYNVDMSYLKRLCGTF---LGGPKP-PQRVMFTED-LKLPASFDAREQWPQCP
: .. .. .. . : : . ::: : . . . :.::.:.: :.
CCDS82 TATTYMEYETLTLGDMIRRSGGHSRKIPRPKPAPLTAEIQQKILHLPTSWDWRNV-HGIN
190 200 210 220 230 240
100 110 120 130 140 150
pF1KB5 TIKEIRDQGSCGSCWAFGAVEAISDRICIHTNAHVSVEVSAEDLLTCCGSMCGDGCNGGY
.. .:.:.:::::..:... . :: : :: . .: .....: :. ..::.::.
CCDS82 FVSPVRNQASCGSCYSFASMGMLEARIRILTNNSQTPILSPQEVVSC--SQYAQGCEGGF
250 260 270 280 290 300
160 170 180 190 200 210
pF1KB5 PAEAWNFWTRKGLVSGGLYESHVGCRPYSIPPCEHHVNGSRPPCTGEGDTPKCSKICEPG
: . . : . :: : .: ::. :. :: . : :
CCDS82 PY----LIAGKYAQDFGLVEE--ACFPYT---------GTDSPCKMKED-------CFRY
310 320 330 340
220 230 240 250 260 270
pF1KB5 YSPTYKQDKHYGYNSYSVSNSEKDIMAEIYKNGPVEGAFSVYSDFLLYKSGVYQHVTGEM
:: : :: . :. : : . :. ..::. :: ::.::: ::.:.:.: ::
CCDS82 YSSEY----HYVGGFYGGCN-EALMKLELVHHGPMAVAFEVYDDFLHYKKGIYHH-TGLR
350 360 370 380 390
280 290 300 310 320
pF1KB5 -------MGGHAIRILGWGVEN--GTPYWLVANSWNTDWGDNGFFKILRGQDHCGIESEV
. .::. ..:.:... : ::.: :::.: ::.::.:.: :: :.:.::: .
CCDS82 DPFNPFELTNHAVLLVGYGTDSASGMDYWIVKNSWGTGWGENGYFRIRRGTDECAIESIA
400 410 420 430 440 450
330
pF1KB5 VAGIPRTDQYWEKI
::. :
CCDS82 VAATPIPKL
460
339 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 17:23:52 2016 done: Thu Nov 3 17:23:53 2016
Total Scan time: 2.660 Total Display time: 0.010
Function used was FASTA [36.3.4 Apr, 2011]