Result of FASTA (omim) for
pF1KB5440
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB5440, 327 aa
1>>>pF1KB5440 327 - 327 aa - 327 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.4009+/-0.000278; mu= 17.6626+/- 0.018
mean_var=88.3276+/-17.878, 0's: 0 Z-trim(120.5): 39 B-trim: 1192 in 1/57
Lambda= 0.136466
statistics sampled from 35677 (35716) to 35677 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.763), E-opt: 0.2 (0.419), width: 16
Scan time: 8.190
The best scores are: opt bits E(85289)
NP_009186 (OMIM: 130070,604327) beta-1,4-galactosy ( 327) 2315 464.9 1e-130
XP_016864488 (OMIM: 130070,604327) PREDICTED: beta ( 213) 1484 301.2 1.3e-81
XP_006714879 (OMIM: 130070,604327) PREDICTED: beta ( 167) 1185 242.2 5.7e-64
XP_016881578 (OMIM: 604017) PREDICTED: beta-1,4-ga ( 338) 433 94.4 3.6e-19
XP_006722642 (OMIM: 604017) PREDICTED: beta-1,4-ga ( 338) 433 94.4 3.6e-19
NP_001317499 (OMIM: 604017) beta-1,4-galactosyltra ( 343) 433 94.4 3.6e-19
XP_006722641 (OMIM: 604017) PREDICTED: beta-1,4-ga ( 344) 433 94.4 3.6e-19
XP_005258444 (OMIM: 604017) PREDICTED: beta-1,4-ga ( 370) 433 94.5 3.8e-19
NP_004766 (OMIM: 604017) beta-1,4-galactosyltransf ( 382) 433 94.5 3.9e-19
NP_001488 (OMIM: 137060,607091) beta-1,4-galactosy ( 398) 430 93.9 6e-19
NP_004767 (OMIM: 604016) beta-1,4-galactosyltransf ( 388) 426 93.1 1e-18
XP_016881580 (OMIM: 604017) PREDICTED: beta-1,4-ga ( 269) 416 91.0 3.1e-18
XP_016881579 (OMIM: 604017) PREDICTED: beta-1,4-ga ( 274) 416 91.0 3.1e-18
NP_003770 (OMIM: 604014) beta-1,4-galactosyltransf ( 393) 405 89.0 1.8e-17
NP_001186803 (OMIM: 604014) beta-1,4-galactosyltra ( 393) 405 89.0 1.8e-17
NP_001186802 (OMIM: 604014) beta-1,4-galactosyltra ( 393) 405 89.0 1.8e-17
XP_005245623 (OMIM: 604014) PREDICTED: beta-1,4-ga ( 393) 405 89.0 1.8e-17
XP_006713864 (OMIM: 604015) PREDICTED: beta-1,4-ga ( 344) 396 87.1 5.6e-17
NP_997708 (OMIM: 604015) beta-1,4-galactosyltransf ( 344) 396 87.1 5.6e-17
XP_011511562 (OMIM: 604015) PREDICTED: beta-1,4-ga ( 344) 396 87.1 5.6e-17
XP_005247912 (OMIM: 604015) PREDICTED: beta-1,4-ga ( 344) 396 87.1 5.6e-17
XP_006713863 (OMIM: 604015) PREDICTED: beta-1,4-ga ( 344) 396 87.1 5.6e-17
XP_006713862 (OMIM: 604015) PREDICTED: beta-1,4-ga ( 344) 396 87.1 5.6e-17
NP_003769 (OMIM: 604015) beta-1,4-galactosyltransf ( 344) 396 87.1 5.6e-17
XP_006713861 (OMIM: 604015) PREDICTED: beta-1,4-ga ( 344) 396 87.1 5.6e-17
XP_011508395 (OMIM: 604014) PREDICTED: beta-1,4-ga ( 310) 395 86.9 6e-17
XP_016858203 (OMIM: 604014) PREDICTED: beta-1,4-ga ( 310) 395 86.9 6e-17
XP_016858205 (OMIM: 604013) PREDICTED: beta-1,4-ga ( 372) 387 85.4 2e-16
XP_016858206 (OMIM: 604013) PREDICTED: beta-1,4-ga ( 372) 387 85.4 2e-16
NP_003771 (OMIM: 604013) beta-1,4-galactosyltransf ( 372) 387 85.4 2e-16
NP_001005417 (OMIM: 604013) beta-1,4-galactosyltra ( 372) 387 85.4 2e-16
NP_085076 (OMIM: 604013) beta-1,4-galactosyltransf ( 401) 387 85.4 2.1e-16
XP_016881581 (OMIM: 604017) PREDICTED: beta-1,4-ga ( 202) 345 76.9 4e-14
XP_005251497 (OMIM: 137060,607091) PREDICTED: beta ( 357) 232 54.9 3e-07
XP_016862890 (OMIM: 604015) PREDICTED: beta-1,4-ga ( 303) 229 54.2 4e-07
XP_016858204 (OMIM: 604014) PREDICTED: beta-1,4-ga ( 227) 227 53.7 4.3e-07
>>NP_009186 (OMIM: 130070,604327) beta-1,4-galactosyltra (327 aa)
initn: 2315 init1: 2315 opt: 2315 Z-score: 2467.9 bits: 464.9 E(85289): 1e-130
Smith-Waterman score: 2315; 100.0% identity (100.0% similar) in 327 aa overlap (1-327:1-327)
10 20 30 40 50 60
pF1KB5 MFPSRRKAAQLPWEDGRSGLLSGGLPRKCSVFHLFVACLSLGFFSLLWLQLSCSGDVARA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_009 MFPSRRKAAQLPWEDGRSGLLSGGLPRKCSVFHLFVACLSLGFFSLLWLQLSCSGDVARA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 VRGQGQETSGPPRACPPEPPPEHWEEDASWGPHRLAVLVPFRERFEELLVFVPHMRRFLS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_009 VRGQGQETSGPPRACPPEPPPEHWEEDASWGPHRLAVLVPFRERFEELLVFVPHMRRFLS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB5 RKKIRHHIYVLNQVDHFRFNRAALINVGFLESSNSTDYIAMHDVDLLPLNEELDYGFPEA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_009 RKKIRHHIYVLNQVDHFRFNRAALINVGFLESSNSTDYIAMHDVDLLPLNEELDYGFPEA
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB5 GPFHVASPELHPLYHYKTYVGGILLLSKQHYRLCNGMSNRFWGWGREDDEFYRRIKGAGL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_009 GPFHVASPELHPLYHYKTYVGGILLLSKQHYRLCNGMSNRFWGWGREDDEFYRRIKGAGL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB5 QLFRPSGITTGYKTFRHLHDPAWRKRDQKRIAAQKQEQFKVDREGGLNTVKYHVASRTAL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_009 QLFRPSGITTGYKTFRHLHDPAWRKRDQKRIAAQKQEQFKVDREGGLNTVKYHVASRTAL
250 260 270 280 290 300
310 320
pF1KB5 SVGGAPCTVLNIMLDCDKTATPWCTFS
:::::::::::::::::::::::::::
NP_009 SVGGAPCTVLNIMLDCDKTATPWCTFS
310 320
>>XP_016864488 (OMIM: 130070,604327) PREDICTED: beta-1,4 (213 aa)
initn: 1484 init1: 1484 opt: 1484 Z-score: 1586.2 bits: 301.2 E(85289): 1.3e-81
Smith-Waterman score: 1484; 100.0% identity (100.0% similar) in 213 aa overlap (115-327:1-213)
90 100 110 120 130 140
pF1KB5 EEDASWGPHRLAVLVPFRERFEELLVFVPHMRRFLSRKKIRHHIYVLNQVDHFRFNRAAL
::::::::::::::::::::::::::::::
XP_016 MRRFLSRKKIRHHIYVLNQVDHFRFNRAAL
10 20 30
150 160 170 180 190 200
pF1KB5 INVGFLESSNSTDYIAMHDVDLLPLNEELDYGFPEAGPFHVASPELHPLYHYKTYVGGIL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 INVGFLESSNSTDYIAMHDVDLLPLNEELDYGFPEAGPFHVASPELHPLYHYKTYVGGIL
40 50 60 70 80 90
210 220 230 240 250 260
pF1KB5 LLSKQHYRLCNGMSNRFWGWGREDDEFYRRIKGAGLQLFRPSGITTGYKTFRHLHDPAWR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LLSKQHYRLCNGMSNRFWGWGREDDEFYRRIKGAGLQLFRPSGITTGYKTFRHLHDPAWR
100 110 120 130 140 150
270 280 290 300 310 320
pF1KB5 KRDQKRIAAQKQEQFKVDREGGLNTVKYHVASRTALSVGGAPCTVLNIMLDCDKTATPWC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 KRDQKRIAAQKQEQFKVDREGGLNTVKYHVASRTALSVGGAPCTVLNIMLDCDKTATPWC
160 170 180 190 200 210
pF1KB5 TFS
:::
XP_016 TFS
>>XP_006714879 (OMIM: 130070,604327) PREDICTED: beta-1,4 (167 aa)
initn: 1185 init1: 1185 opt: 1185 Z-score: 1269.5 bits: 242.2 E(85289): 5.7e-64
Smith-Waterman score: 1185; 100.0% identity (100.0% similar) in 167 aa overlap (161-327:1-167)
140 150 160 170 180 190
pF1KB5 LNQVDHFRFNRAALINVGFLESSNSTDYIAMHDVDLLPLNEELDYGFPEAGPFHVASPEL
::::::::::::::::::::::::::::::
XP_006 MHDVDLLPLNEELDYGFPEAGPFHVASPEL
10 20 30
200 210 220 230 240 250
pF1KB5 HPLYHYKTYVGGILLLSKQHYRLCNGMSNRFWGWGREDDEFYRRIKGAGLQLFRPSGITT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 HPLYHYKTYVGGILLLSKQHYRLCNGMSNRFWGWGREDDEFYRRIKGAGLQLFRPSGITT
40 50 60 70 80 90
260 270 280 290 300 310
pF1KB5 GYKTFRHLHDPAWRKRDQKRIAAQKQEQFKVDREGGLNTVKYHVASRTALSVGGAPCTVL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 GYKTFRHLHDPAWRKRDQKRIAAQKQEQFKVDREGGLNTVKYHVASRTALSVGGAPCTVL
100 110 120 130 140 150
320
pF1KB5 NIMLDCDKTATPWCTFS
:::::::::::::::::
XP_006 NIMLDCDKTATPWCTFS
160
>>XP_016881578 (OMIM: 604017) PREDICTED: beta-1,4-galact (338 aa)
initn: 404 init1: 202 opt: 433 Z-score: 465.3 bits: 94.4 E(85289): 3.6e-19
Smith-Waterman score: 433; 35.0% identity (61.3% similar) in 217 aa overlap (80-292:99-311)
50 60 70 80 90 100
pF1KB5 QLSCSGDVARAVRGQGQETSGPPRACPPEPPPEHWEEDASWGPHRLAVLVPFRERFEELL
: ::. ..:::.:::.: :.:
XP_016 PYMRGFLNVNVSEVSFDEIHQLFSKDLDIEPGGHWRPKDCKPRWKVAVLIPFRNRHEHLP
70 80 90 100 110 120
110 120 130 140 150 160
pF1KB5 VFVPHMRRFLSRKKIRHHIYVLNQVDHFRFNRAALINVGFLESSNST--DYIAMHDVDLL
.: :. .:...... .::..:. :::: :.:::: :. ... : . .:::: :
XP_016 IFFLHLIPMLQKQRLEFAFYVIEQTGTQPFNRAMLFNVGFKEAMKDSVWDCVIFHDVDHL
130 140 150 160 170 180
170 180 190 200 210 220
pF1KB5 PLNEELDYGFPEAGPFHVASPELHPLY--HYKTYVGGILLLSKQHYRLCNGMSNRFWGWG
: :.. :: : : : :. . .: :: . ::. :. ...: ::. : :::::
XP_016 PENDRNYYGCGEM-PRHFAAKLDKYMYILPYKEFFGGVSGLTVEQFRKINGFPNAFWGWG
190 200 210 220 230 240
230 240 250 260 270 280
pF1KB5 REDDEFYRRIKGAGLQLFRPSGITTGYKTFRHLHDPAWRKRDQKRIAAQKQEQFKVDREG
:::... :.. :: .. :: : ::.. : : . . .. ..:. .:
XP_016 GEDDDLWNRVHYAGYNVTRPEGDLGKYKSIPHHHRGEVQFLGRYKLLRYSKERQYID---
250 260 270 280 290 300
290 300 310 320
pF1KB5 GLNTVKYHVASRTALSVGGAPCTVLNIMLDCDKTATPWCTFS
:::.. :
XP_016 GLNNLIYRPKILVDRLYTNISVNLMPELAPIEDY
310 320 330
>>XP_006722642 (OMIM: 604017) PREDICTED: beta-1,4-galact (338 aa)
initn: 404 init1: 202 opt: 433 Z-score: 465.3 bits: 94.4 E(85289): 3.6e-19
Smith-Waterman score: 433; 35.0% identity (61.3% similar) in 217 aa overlap (80-292:99-311)
50 60 70 80 90 100
pF1KB5 QLSCSGDVARAVRGQGQETSGPPRACPPEPPPEHWEEDASWGPHRLAVLVPFRERFEELL
: ::. ..:::.:::.: :.:
XP_006 PYMRGFLNVNVSEVSFDEIHQLFSKDLDIEPGGHWRPKDCKPRWKVAVLIPFRNRHEHLP
70 80 90 100 110 120
110 120 130 140 150 160
pF1KB5 VFVPHMRRFLSRKKIRHHIYVLNQVDHFRFNRAALINVGFLESSNST--DYIAMHDVDLL
.: :. .:...... .::..:. :::: :.:::: :. ... : . .:::: :
XP_006 IFFLHLIPMLQKQRLEFAFYVIEQTGTQPFNRAMLFNVGFKEAMKDSVWDCVIFHDVDHL
130 140 150 160 170 180
170 180 190 200 210 220
pF1KB5 PLNEELDYGFPEAGPFHVASPELHPLY--HYKTYVGGILLLSKQHYRLCNGMSNRFWGWG
: :.. :: : : : :. . .: :: . ::. :. ...: ::. : :::::
XP_006 PENDRNYYGCGEM-PRHFAAKLDKYMYILPYKEFFGGVSGLTVEQFRKINGFPNAFWGWG
190 200 210 220 230 240
230 240 250 260 270 280
pF1KB5 REDDEFYRRIKGAGLQLFRPSGITTGYKTFRHLHDPAWRKRDQKRIAAQKQEQFKVDREG
:::... :.. :: .. :: : ::.. : : . . .. ..:. .:
XP_006 GEDDDLWNRVHYAGYNVTRPEGDLGKYKSIPHHHRGEVQFLGRYKLLRYSKERQYID---
250 260 270 280 290 300
290 300 310 320
pF1KB5 GLNTVKYHVASRTALSVGGAPCTVLNIMLDCDKTATPWCTFS
:::.. :
XP_006 GLNNLIYRPKILVDRLYTNISVNLMPELAPIEDY
310 320 330
>>NP_001317499 (OMIM: 604017) beta-1,4-galactosyltransfe (343 aa)
initn: 404 init1: 202 opt: 433 Z-score: 465.2 bits: 94.4 E(85289): 3.6e-19
Smith-Waterman score: 433; 35.0% identity (61.3% similar) in 217 aa overlap (80-292:104-316)
50 60 70 80 90 100
pF1KB5 QLSCSGDVARAVRGQGQETSGPPRACPPEPPPEHWEEDASWGPHRLAVLVPFRERFEELL
: ::. ..:::.:::.: :.:
NP_001 PYMRGFLNVNVSEVSFDEIHQLFSKDLDIEPGGHWRPKDCKPRWKVAVLIPFRNRHEHLP
80 90 100 110 120 130
110 120 130 140 150 160
pF1KB5 VFVPHMRRFLSRKKIRHHIYVLNQVDHFRFNRAALINVGFLESSNST--DYIAMHDVDLL
.: :. .:...... .::..:. :::: :.:::: :. ... : . .:::: :
NP_001 IFFLHLIPMLQKQRLEFAFYVIEQTGTQPFNRAMLFNVGFKEAMKDSVWDCVIFHDVDHL
140 150 160 170 180 190
170 180 190 200 210 220
pF1KB5 PLNEELDYGFPEAGPFHVASPELHPLY--HYKTYVGGILLLSKQHYRLCNGMSNRFWGWG
: :.. :: : : : :. . .: :: . ::. :. ...: ::. : :::::
NP_001 PENDRNYYGCGEM-PRHFAAKLDKYMYILPYKEFFGGVSGLTVEQFRKINGFPNAFWGWG
200 210 220 230 240 250
230 240 250 260 270 280
pF1KB5 REDDEFYRRIKGAGLQLFRPSGITTGYKTFRHLHDPAWRKRDQKRIAAQKQEQFKVDREG
:::... :.. :: .. :: : ::.. : : . . .. ..:. .:
NP_001 GEDDDLWNRVHYAGYNVTRPEGDLGKYKSIPHHHRGEVQFLGRYKLLRYSKERQYID---
260 270 280 290 300
290 300 310 320
pF1KB5 GLNTVKYHVASRTALSVGGAPCTVLNIMLDCDKTATPWCTFS
:::.. :
NP_001 GLNNLIYRPKILVDRLYTNISVNLMPELAPIEDY
310 320 330 340
>>XP_006722641 (OMIM: 604017) PREDICTED: beta-1,4-galact (344 aa)
initn: 404 init1: 202 opt: 433 Z-score: 465.2 bits: 94.4 E(85289): 3.6e-19
Smith-Waterman score: 433; 35.0% identity (61.3% similar) in 217 aa overlap (80-292:105-317)
50 60 70 80 90 100
pF1KB5 QLSCSGDVARAVRGQGQETSGPPRACPPEPPPEHWEEDASWGPHRLAVLVPFRERFEELL
: ::. ..:::.:::.: :.:
XP_006 NGTGGFLNVNVSEVSFDEIHQLFSKDLDIEPGGHWRPKDCKPRWKVAVLIPFRNRHEHLP
80 90 100 110 120 130
110 120 130 140 150 160
pF1KB5 VFVPHMRRFLSRKKIRHHIYVLNQVDHFRFNRAALINVGFLESSNST--DYIAMHDVDLL
.: :. .:...... .::..:. :::: :.:::: :. ... : . .:::: :
XP_006 IFFLHLIPMLQKQRLEFAFYVIEQTGTQPFNRAMLFNVGFKEAMKDSVWDCVIFHDVDHL
140 150 160 170 180 190
170 180 190 200 210 220
pF1KB5 PLNEELDYGFPEAGPFHVASPELHPLY--HYKTYVGGILLLSKQHYRLCNGMSNRFWGWG
: :.. :: : : : :. . .: :: . ::. :. ...: ::. : :::::
XP_006 PENDRNYYGCGEM-PRHFAAKLDKYMYILPYKEFFGGVSGLTVEQFRKINGFPNAFWGWG
200 210 220 230 240 250
230 240 250 260 270 280
pF1KB5 REDDEFYRRIKGAGLQLFRPSGITTGYKTFRHLHDPAWRKRDQKRIAAQKQEQFKVDREG
:::... :.. :: .. :: : ::.. : : . . .. ..:. .:
XP_006 GEDDDLWNRVHYAGYNVTRPEGDLGKYKSIPHHHRGEVQFLGRYKLLRYSKERQYID---
260 270 280 290 300 310
290 300 310 320
pF1KB5 GLNTVKYHVASRTALSVGGAPCTVLNIMLDCDKTATPWCTFS
:::.. :
XP_006 GLNNLIYRPKILVDRLYTNISVNLMPELAPIEDY
320 330 340
>>XP_005258444 (OMIM: 604017) PREDICTED: beta-1,4-galact (370 aa)
initn: 404 init1: 202 opt: 433 Z-score: 464.7 bits: 94.5 E(85289): 3.8e-19
Smith-Waterman score: 433; 35.0% identity (61.3% similar) in 217 aa overlap (80-292:131-343)
50 60 70 80 90 100
pF1KB5 QLSCSGDVARAVRGQGQETSGPPRACPPEPPPEHWEEDASWGPHRLAVLVPFRERFEELL
: ::. ..:::.:::.: :.:
XP_005 PYMRGFLNVNVSEVSFDEIHQLFSKDLDIEPGGHWRPKDCKPRWKVAVLIPFRNRHEHLP
110 120 130 140 150 160
110 120 130 140 150 160
pF1KB5 VFVPHMRRFLSRKKIRHHIYVLNQVDHFRFNRAALINVGFLESSNST--DYIAMHDVDLL
.: :. .:...... .::..:. :::: :.:::: :. ... : . .:::: :
XP_005 IFFLHLIPMLQKQRLEFAFYVIEQTGTQPFNRAMLFNVGFKEAMKDSVWDCVIFHDVDHL
170 180 190 200 210 220
170 180 190 200 210 220
pF1KB5 PLNEELDYGFPEAGPFHVASPELHPLY--HYKTYVGGILLLSKQHYRLCNGMSNRFWGWG
: :.. :: : : : :. . .: :: . ::. :. ...: ::. : :::::
XP_005 PENDRNYYGCGEM-PRHFAAKLDKYMYILPYKEFFGGVSGLTVEQFRKINGFPNAFWGWG
230 240 250 260 270
230 240 250 260 270 280
pF1KB5 REDDEFYRRIKGAGLQLFRPSGITTGYKTFRHLHDPAWRKRDQKRIAAQKQEQFKVDREG
:::... :.. :: .. :: : ::.. : : . . .. ..:. .:
XP_005 GEDDDLWNRVHYAGYNVTRPEGDLGKYKSIPHHHRGEVQFLGRYKLLRYSKERQYID---
280 290 300 310 320 330
290 300 310 320
pF1KB5 GLNTVKYHVASRTALSVGGAPCTVLNIMLDCDKTATPWCTFS
:::.. :
XP_005 GLNNLIYRPKILVDRLYTNISVNLMPELAPIEDY
340 350 360 370
>>NP_004766 (OMIM: 604017) beta-1,4-galactosyltransferas (382 aa)
initn: 404 init1: 202 opt: 433 Z-score: 464.5 bits: 94.5 E(85289): 3.9e-19
Smith-Waterman score: 433; 35.0% identity (61.3% similar) in 217 aa overlap (80-292:143-355)
50 60 70 80 90 100
pF1KB5 QLSCSGDVARAVRGQGQETSGPPRACPPEPPPEHWEEDASWGPHRLAVLVPFRERFEELL
: ::. ..:::.:::.: :.:
NP_004 PYMRGFLNVNVSEVSFDEIHQLFSKDLDIEPGGHWRPKDCKPRWKVAVLIPFRNRHEHLP
120 130 140 150 160 170
110 120 130 140 150 160
pF1KB5 VFVPHMRRFLSRKKIRHHIYVLNQVDHFRFNRAALINVGFLESSNST--DYIAMHDVDLL
.: :. .:...... .::..:. :::: :.:::: :. ... : . .:::: :
NP_004 IFFLHLIPMLQKQRLEFAFYVIEQTGTQPFNRAMLFNVGFKEAMKDSVWDCVIFHDVDHL
180 190 200 210 220 230
170 180 190 200 210 220
pF1KB5 PLNEELDYGFPEAGPFHVASPELHPLY--HYKTYVGGILLLSKQHYRLCNGMSNRFWGWG
: :.. :: : : : :. . .: :: . ::. :. ...: ::. : :::::
NP_004 PENDRNYYGCGEM-PRHFAAKLDKYMYILPYKEFFGGVSGLTVEQFRKINGFPNAFWGWG
240 250 260 270 280 290
230 240 250 260 270 280
pF1KB5 REDDEFYRRIKGAGLQLFRPSGITTGYKTFRHLHDPAWRKRDQKRIAAQKQEQFKVDREG
:::... :.. :: .. :: : ::.. : : . . .. ..:. .:
NP_004 GEDDDLWNRVHYAGYNVTRPEGDLGKYKSIPHHHRGEVQFLGRYKLLRYSKERQYID---
300 310 320 330 340
290 300 310 320
pF1KB5 GLNTVKYHVASRTALSVGGAPCTVLNIMLDCDKTATPWCTFS
:::.. :
NP_004 GLNNLIYRPKILVDRLYTNISVNLMPELAPIEDY
350 360 370 380
>>NP_001488 (OMIM: 137060,607091) beta-1,4-galactosyltra (398 aa)
initn: 398 init1: 193 opt: 430 Z-score: 461.1 bits: 93.9 E(85289): 6e-19
Smith-Waterman score: 430; 35.1% identity (64.9% similar) in 208 aa overlap (92-294:175-378)
70 80 90 100 110 120
pF1KB5 RGQGQETSGPPRACPPEPPPEHWEEDASWGPHRLAVLVPFRERFEELLVFVPHMRRFLSR
::..:...:::.: :.: .. ... :.:
NP_001 FNMPVDLELVAKQNPNVKMGGRYAPRDCVSPHKVAIIIPFRNRQEHLKYWLYYLHPVLQR
150 160 170 180 190 200
130 140 150 160 170
pF1KB5 KKIRHHIYVLNQVDHFRFNRAALINVGFLESSNSTDY--IAMHDVDLLPLNEELDYG-FP
... . :::.::. :::: :.:::: :. .. :: ... ::::.:.:.. : :
NP_001 QQLDYGIYVINQAGDTIFNRAKLLNVGFQEALKDYDYTCFVFSDVDLIPMNDHNAYRCFS
210 220 230 240 250 260
180 190 200 210 220 230
pF1KB5 EAGPFHVASPELHPLYHYKTYVGGILLLSKQHYRLCNGMSNRFWGWGREDDEFYRRIKGA
. . :: .. : : ::. ::::.. ::. : .:::: :::... :.
NP_001 QPRHISVAMDKFGFSLPYVQYFGGVSALSKQQFLTINGFPNNYWGWGGEDDDIFNRLVFR
270 280 290 300 310 320
240 250 260 270 280 290
pF1KB5 GLQLFRPSGITTGYKTFRHLHDPAWRKRDQK--RIAAQKQEQFKVDREGGLNTVKYHVAS
:... ::.... . .:: .: . :. ::: :. ... :::.. :.:
NP_001 GMSISRPNAVVGRCRMIRHSRDKKNEPNPQRFDRIAHTKETMLS----DGLNSLTYQVLD
330 340 350 360 370 380
300 310 320
pF1KB5 RTALSVGGAPCTVLNIMLDCDKTATPWCTFS
NP_001 VQRYPLYTQITVDIGTPS
390
327 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 12:48:02 2016 done: Sat Nov 5 12:48:04 2016
Total Scan time: 8.190 Total Display time: 0.010
Function used was FASTA [36.3.4 Apr, 2011]