Result of FASTA (omim) for
pF1KB5432
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB5432, 609 aa
1>>>pF1KB5432 609 - 609 aa - 609 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.2710+/-0.000376; mu= 20.2095+/- 0.024
mean_var=74.5772+/-14.991, 0's: 0 Z-trim(113.5): 22 B-trim: 642 in 1/51
Lambda= 0.148515
statistics sampled from 22785 (22802) to 22785 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.631), E-opt: 0.2 (0.267), width: 16
Scan time: 9.360
The best scores are: opt bits E(85289)
NP_001460 (OMIM: 152690) X-ray repair cross-comple ( 609) 3974 861.1 0
NP_001275905 (OMIM: 152690) X-ray repair cross-com ( 609) 3974 861.1 0
NP_001275907 (OMIM: 152690) X-ray repair cross-com ( 559) 3551 770.5 0
NP_001275906 (OMIM: 152690) X-ray repair cross-com ( 568) 3303 717.4 3.4e-206
>>NP_001460 (OMIM: 152690) X-ray repair cross-complement (609 aa)
initn: 3974 init1: 3974 opt: 3974 Z-score: 4599.5 bits: 861.1 E(85289): 0
Smith-Waterman score: 3974; 100.0% identity (100.0% similar) in 609 aa overlap (1-609:1-609)
10 20 30 40 50 60
pF1KB5 MSGWESYYKTEGDEEAEEEQEENLEASGDYKYSGRDSLIFLVDASKAMFESQSEDELTPF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MSGWESYYKTEGDEEAEEEQEENLEASGDYKYSGRDSLIFLVDASKAMFESQSEDELTPF
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 DMSIQCIQSVYISKIISSDRDLLAVVFYGTEKDKNSVNFKNIYVLQELDNPGAKRILELD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DMSIQCIQSVYISKIISSDRDLLAVVFYGTEKDKNSVNFKNIYVLQELDNPGAKRILELD
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB5 QFKGQQGQKRFQDMMGHGSDYSLSEVLWVCANLFSDVQFKMSHKRIMLFTNEDNPHGNDS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QFKGQQGQKRFQDMMGHGSDYSLSEVLWVCANLFSDVQFKMSHKRIMLFTNEDNPHGNDS
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB5 AKASRARTKAGDLRDTGIFLDLMHLKKPGGFDISLFYRDIISIAEDEDLRVHFEESSKLE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 AKASRARTKAGDLRDTGIFLDLMHLKKPGGFDISLFYRDIISIAEDEDLRVHFEESSKLE
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB5 DLLRKVRAKETRKRALSRLKLKLNKDIVISVGIYNLVQKALKPPPIKLYRETNEPVKTKT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DLLRKVRAKETRKRALSRLKLKLNKDIVISVGIYNLVQKALKPPPIKLYRETNEPVKTKT
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB5 RTFNTSTGGLLLPSDTKRSQIYGSRQIILEKEETEELKRFDDPGLMLMGFKPLVLLKKHH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RTFNTSTGGLLLPSDTKRSQIYGSRQIILEKEETEELKRFDDPGLMLMGFKPLVLLKKHH
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB5 YLRPSLFVYPEESLVIGSSTLFSALLIKCLEKEVAALCRYTPRRNIPPYFVALVPQEEEL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 YLRPSLFVYPEESLVIGSSTLFSALLIKCLEKEVAALCRYTPRRNIPPYFVALVPQEEEL
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB5 DDQKIQVTPPGFQLVFLPFADDKRKMPFTEKIMATPEQVGKMKAIVEKLRFTYRSDSFEN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DDQKIQVTPPGFQLVFLPFADDKRKMPFTEKIMATPEQVGKMKAIVEKLRFTYRSDSFEN
430 440 450 460 470 480
490 500 510 520 530 540
pF1KB5 PVLQQHFRNLEALALDLMEPEQAVDLTLPKVEAMNKRLGSLVDEFKELVYPPDYNPEGKV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PVLQQHFRNLEALALDLMEPEQAVDLTLPKVEAMNKRLGSLVDEFKELVYPPDYNPEGKV
490 500 510 520 530 540
550 560 570 580 590 600
pF1KB5 TKRKHDNEGSGSKRPKVEYSEEELKTHISKGTLGKFTVPMLKEACRAYGLKSGLKKQELL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TKRKHDNEGSGSKRPKVEYSEEELKTHISKGTLGKFTVPMLKEACRAYGLKSGLKKQELL
550 560 570 580 590 600
pF1KB5 EALTKHFQD
:::::::::
NP_001 EALTKHFQD
>>NP_001275905 (OMIM: 152690) X-ray repair cross-complem (609 aa)
initn: 3974 init1: 3974 opt: 3974 Z-score: 4599.5 bits: 861.1 E(85289): 0
Smith-Waterman score: 3974; 100.0% identity (100.0% similar) in 609 aa overlap (1-609:1-609)
10 20 30 40 50 60
pF1KB5 MSGWESYYKTEGDEEAEEEQEENLEASGDYKYSGRDSLIFLVDASKAMFESQSEDELTPF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MSGWESYYKTEGDEEAEEEQEENLEASGDYKYSGRDSLIFLVDASKAMFESQSEDELTPF
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 DMSIQCIQSVYISKIISSDRDLLAVVFYGTEKDKNSVNFKNIYVLQELDNPGAKRILELD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DMSIQCIQSVYISKIISSDRDLLAVVFYGTEKDKNSVNFKNIYVLQELDNPGAKRILELD
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB5 QFKGQQGQKRFQDMMGHGSDYSLSEVLWVCANLFSDVQFKMSHKRIMLFTNEDNPHGNDS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QFKGQQGQKRFQDMMGHGSDYSLSEVLWVCANLFSDVQFKMSHKRIMLFTNEDNPHGNDS
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB5 AKASRARTKAGDLRDTGIFLDLMHLKKPGGFDISLFYRDIISIAEDEDLRVHFEESSKLE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 AKASRARTKAGDLRDTGIFLDLMHLKKPGGFDISLFYRDIISIAEDEDLRVHFEESSKLE
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB5 DLLRKVRAKETRKRALSRLKLKLNKDIVISVGIYNLVQKALKPPPIKLYRETNEPVKTKT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DLLRKVRAKETRKRALSRLKLKLNKDIVISVGIYNLVQKALKPPPIKLYRETNEPVKTKT
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB5 RTFNTSTGGLLLPSDTKRSQIYGSRQIILEKEETEELKRFDDPGLMLMGFKPLVLLKKHH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RTFNTSTGGLLLPSDTKRSQIYGSRQIILEKEETEELKRFDDPGLMLMGFKPLVLLKKHH
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB5 YLRPSLFVYPEESLVIGSSTLFSALLIKCLEKEVAALCRYTPRRNIPPYFVALVPQEEEL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 YLRPSLFVYPEESLVIGSSTLFSALLIKCLEKEVAALCRYTPRRNIPPYFVALVPQEEEL
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB5 DDQKIQVTPPGFQLVFLPFADDKRKMPFTEKIMATPEQVGKMKAIVEKLRFTYRSDSFEN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DDQKIQVTPPGFQLVFLPFADDKRKMPFTEKIMATPEQVGKMKAIVEKLRFTYRSDSFEN
430 440 450 460 470 480
490 500 510 520 530 540
pF1KB5 PVLQQHFRNLEALALDLMEPEQAVDLTLPKVEAMNKRLGSLVDEFKELVYPPDYNPEGKV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PVLQQHFRNLEALALDLMEPEQAVDLTLPKVEAMNKRLGSLVDEFKELVYPPDYNPEGKV
490 500 510 520 530 540
550 560 570 580 590 600
pF1KB5 TKRKHDNEGSGSKRPKVEYSEEELKTHISKGTLGKFTVPMLKEACRAYGLKSGLKKQELL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TKRKHDNEGSGSKRPKVEYSEEELKTHISKGTLGKFTVPMLKEACRAYGLKSGLKKQELL
550 560 570 580 590 600
pF1KB5 EALTKHFQD
:::::::::
NP_001 EALTKHFQD
>>NP_001275907 (OMIM: 152690) X-ray repair cross-complem (559 aa)
initn: 3551 init1: 3551 opt: 3551 Z-score: 4110.2 bits: 770.5 E(85289): 0
Smith-Waterman score: 3551; 100.0% identity (100.0% similar) in 544 aa overlap (66-609:16-559)
40 50 60 70 80 90
pF1KB5 DSLIFLVDASKAMFESQSEDELTPFDMSIQCIQSVYISKIISSDRDLLAVVFYGTEKDKN
::::::::::::::::::::::::::::::
NP_001 MKKQRKNKKRTLKQVCIQSVYISKIISSDRDLLAVVFYGTEKDKN
10 20 30 40
100 110 120 130 140 150
pF1KB5 SVNFKNIYVLQELDNPGAKRILELDQFKGQQGQKRFQDMMGHGSDYSLSEVLWVCANLFS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SVNFKNIYVLQELDNPGAKRILELDQFKGQQGQKRFQDMMGHGSDYSLSEVLWVCANLFS
50 60 70 80 90 100
160 170 180 190 200 210
pF1KB5 DVQFKMSHKRIMLFTNEDNPHGNDSAKASRARTKAGDLRDTGIFLDLMHLKKPGGFDISL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DVQFKMSHKRIMLFTNEDNPHGNDSAKASRARTKAGDLRDTGIFLDLMHLKKPGGFDISL
110 120 130 140 150 160
220 230 240 250 260 270
pF1KB5 FYRDIISIAEDEDLRVHFEESSKLEDLLRKVRAKETRKRALSRLKLKLNKDIVISVGIYN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FYRDIISIAEDEDLRVHFEESSKLEDLLRKVRAKETRKRALSRLKLKLNKDIVISVGIYN
170 180 190 200 210 220
280 290 300 310 320 330
pF1KB5 LVQKALKPPPIKLYRETNEPVKTKTRTFNTSTGGLLLPSDTKRSQIYGSRQIILEKEETE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LVQKALKPPPIKLYRETNEPVKTKTRTFNTSTGGLLLPSDTKRSQIYGSRQIILEKEETE
230 240 250 260 270 280
340 350 360 370 380 390
pF1KB5 ELKRFDDPGLMLMGFKPLVLLKKHHYLRPSLFVYPEESLVIGSSTLFSALLIKCLEKEVA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ELKRFDDPGLMLMGFKPLVLLKKHHYLRPSLFVYPEESLVIGSSTLFSALLIKCLEKEVA
290 300 310 320 330 340
400 410 420 430 440 450
pF1KB5 ALCRYTPRRNIPPYFVALVPQEEELDDQKIQVTPPGFQLVFLPFADDKRKMPFTEKIMAT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ALCRYTPRRNIPPYFVALVPQEEELDDQKIQVTPPGFQLVFLPFADDKRKMPFTEKIMAT
350 360 370 380 390 400
460 470 480 490 500 510
pF1KB5 PEQVGKMKAIVEKLRFTYRSDSFENPVLQQHFRNLEALALDLMEPEQAVDLTLPKVEAMN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PEQVGKMKAIVEKLRFTYRSDSFENPVLQQHFRNLEALALDLMEPEQAVDLTLPKVEAMN
410 420 430 440 450 460
520 530 540 550 560 570
pF1KB5 KRLGSLVDEFKELVYPPDYNPEGKVTKRKHDNEGSGSKRPKVEYSEEELKTHISKGTLGK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KRLGSLVDEFKELVYPPDYNPEGKVTKRKHDNEGSGSKRPKVEYSEEELKTHISKGTLGK
470 480 490 500 510 520
580 590 600
pF1KB5 FTVPMLKEACRAYGLKSGLKKQELLEALTKHFQD
::::::::::::::::::::::::::::::::::
NP_001 FTVPMLKEACRAYGLKSGLKKQELLEALTKHFQD
530 540 550
>>NP_001275906 (OMIM: 152690) X-ray repair cross-complem (568 aa)
initn: 3303 init1: 3303 opt: 3303 Z-score: 3822.9 bits: 717.4 E(85289): 3.4e-206
Smith-Waterman score: 3625; 93.3% identity (93.3% similar) in 609 aa overlap (1-609:1-568)
10 20 30 40 50 60
pF1KB5 MSGWESYYKTEGDEEAEEEQEENLEASGDYKYSGRDSLIFLVDASKAMFESQSEDELTPF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MSGWESYYKTEGDEEAEEEQEENLEASGDYKYSGRDSLIFLVDASKAMFESQSEDELTPF
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 DMSIQCIQSVYISKIISSDRDLLAVVFYGTEKDKNSVNFKNIYVLQELDNPGAKRILELD
::::: ::::::::::::::
NP_001 DMSIQ-----------------------------------------ELDNPGAKRILELD
70
130 140 150 160 170 180
pF1KB5 QFKGQQGQKRFQDMMGHGSDYSLSEVLWVCANLFSDVQFKMSHKRIMLFTNEDNPHGNDS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QFKGQQGQKRFQDMMGHGSDYSLSEVLWVCANLFSDVQFKMSHKRIMLFTNEDNPHGNDS
80 90 100 110 120 130
190 200 210 220 230 240
pF1KB5 AKASRARTKAGDLRDTGIFLDLMHLKKPGGFDISLFYRDIISIAEDEDLRVHFEESSKLE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 AKASRARTKAGDLRDTGIFLDLMHLKKPGGFDISLFYRDIISIAEDEDLRVHFEESSKLE
140 150 160 170 180 190
250 260 270 280 290 300
pF1KB5 DLLRKVRAKETRKRALSRLKLKLNKDIVISVGIYNLVQKALKPPPIKLYRETNEPVKTKT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DLLRKVRAKETRKRALSRLKLKLNKDIVISVGIYNLVQKALKPPPIKLYRETNEPVKTKT
200 210 220 230 240 250
310 320 330 340 350 360
pF1KB5 RTFNTSTGGLLLPSDTKRSQIYGSRQIILEKEETEELKRFDDPGLMLMGFKPLVLLKKHH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RTFNTSTGGLLLPSDTKRSQIYGSRQIILEKEETEELKRFDDPGLMLMGFKPLVLLKKHH
260 270 280 290 300 310
370 380 390 400 410 420
pF1KB5 YLRPSLFVYPEESLVIGSSTLFSALLIKCLEKEVAALCRYTPRRNIPPYFVALVPQEEEL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 YLRPSLFVYPEESLVIGSSTLFSALLIKCLEKEVAALCRYTPRRNIPPYFVALVPQEEEL
320 330 340 350 360 370
430 440 450 460 470 480
pF1KB5 DDQKIQVTPPGFQLVFLPFADDKRKMPFTEKIMATPEQVGKMKAIVEKLRFTYRSDSFEN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DDQKIQVTPPGFQLVFLPFADDKRKMPFTEKIMATPEQVGKMKAIVEKLRFTYRSDSFEN
380 390 400 410 420 430
490 500 510 520 530 540
pF1KB5 PVLQQHFRNLEALALDLMEPEQAVDLTLPKVEAMNKRLGSLVDEFKELVYPPDYNPEGKV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PVLQQHFRNLEALALDLMEPEQAVDLTLPKVEAMNKRLGSLVDEFKELVYPPDYNPEGKV
440 450 460 470 480 490
550 560 570 580 590 600
pF1KB5 TKRKHDNEGSGSKRPKVEYSEEELKTHISKGTLGKFTVPMLKEACRAYGLKSGLKKQELL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TKRKHDNEGSGSKRPKVEYSEEELKTHISKGTLGKFTVPMLKEACRAYGLKSGLKKQELL
500 510 520 530 540 550
pF1KB5 EALTKHFQD
:::::::::
NP_001 EALTKHFQD
560
609 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 17:19:28 2016 done: Thu Nov 3 17:19:30 2016
Total Scan time: 9.360 Total Display time: 0.020
Function used was FASTA [36.3.4 Apr, 2011]