FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB5430, 151 aa
  1>>>pF1KB5430 151 - 151 aa - 151 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.2289+/-0.000294; mu= 12.4247+/- 0.018
 mean_var=65.4906+/-13.281, 0's: 0 Z-trim(118.1): 8  B-trim: 1547 in 1/58
 Lambda= 0.158484
 statistics sampled from 30728 (30736) to 30728 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.748), E-opt: 0.2 (0.36), width:  16
 Scan time:  5.110

The best scores are:                                      opt bits E(85289)
NP_001020242 (OMIM: 130620,153550) 40S ribosomal p ( 151)  991 234.5 4.9e-62
NP_001020241 (OMIM: 130620,153550) 40S ribosomal p ( 151)  991 234.5 4.9e-62
NP_005608 (OMIM: 130620,153550) 40S ribosomal prot ( 151)  991 234.5 4.9e-62
XP_016865173 (OMIM: 130620,153550) PREDICTED: 40S  ( 178)  848 201.9 3.9e-52


>>NP_001020242 (OMIM: 130620,153550) 40S ribosomal prote  (151 aa)
 initn: 991 init1: 991 opt: 991  Z-score: 1234.8  bits: 234.5 E(85289): 4.9e-62
Smith-Waterman score: 991; 100.0% identity (100.0% similar) in 151 aa overlap (1-151:1-151)

               10        20        30        40        50        60
pF1KB5 MAPRKGKEKKEEQVISLGPQVAEGENVFGVCHIFASFNDTFVHVTDLSGKETICRVTGGM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MAPRKGKEKKEEQVISLGPQVAEGENVFGVCHIFASFNDTFVHVTDLSGKETICRVTGGM
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 KVKADRDESSPYAAMLAAQDVAQRCKELGITALHIKLRATGGNRTKTPGPGAQSALRALA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KVKADRDESSPYAAMLAAQDVAQRCKELGITALHIKLRATGGNRTKTPGPGAQSALRALA
               70        80        90       100       110       120

              130       140       150 
pF1KB5 RSGMKIGRIEDVTPIPSDSTRRKGGRRGRRL
       :::::::::::::::::::::::::::::::
NP_001 RSGMKIGRIEDVTPIPSDSTRRKGGRRGRRL
              130       140       150 

>>NP_001020241 (OMIM: 130620,153550) 40S ribosomal prote  (151 aa)
 initn: 991 init1: 991 opt: 991  Z-score: 1234.8  bits: 234.5 E(85289): 4.9e-62
Smith-Waterman score: 991; 100.0% identity (100.0% similar) in 151 aa overlap (1-151:1-151)

               10        20        30        40        50        60
pF1KB5 MAPRKGKEKKEEQVISLGPQVAEGENVFGVCHIFASFNDTFVHVTDLSGKETICRVTGGM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MAPRKGKEKKEEQVISLGPQVAEGENVFGVCHIFASFNDTFVHVTDLSGKETICRVTGGM
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 KVKADRDESSPYAAMLAAQDVAQRCKELGITALHIKLRATGGNRTKTPGPGAQSALRALA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KVKADRDESSPYAAMLAAQDVAQRCKELGITALHIKLRATGGNRTKTPGPGAQSALRALA
               70        80        90       100       110       120

              130       140       150 
pF1KB5 RSGMKIGRIEDVTPIPSDSTRRKGGRRGRRL
       :::::::::::::::::::::::::::::::
NP_001 RSGMKIGRIEDVTPIPSDSTRRKGGRRGRRL
              130       140       150 

>>NP_005608 (OMIM: 130620,153550) 40S ribosomal protein   (151 aa)
 initn: 991 init1: 991 opt: 991  Z-score: 1234.8  bits: 234.5 E(85289): 4.9e-62
Smith-Waterman score: 991; 100.0% identity (100.0% similar) in 151 aa overlap (1-151:1-151)

               10        20        30        40        50        60
pF1KB5 MAPRKGKEKKEEQVISLGPQVAEGENVFGVCHIFASFNDTFVHVTDLSGKETICRVTGGM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 MAPRKGKEKKEEQVISLGPQVAEGENVFGVCHIFASFNDTFVHVTDLSGKETICRVTGGM
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 KVKADRDESSPYAAMLAAQDVAQRCKELGITALHIKLRATGGNRTKTPGPGAQSALRALA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 KVKADRDESSPYAAMLAAQDVAQRCKELGITALHIKLRATGGNRTKTPGPGAQSALRALA
               70        80        90       100       110       120

              130       140       150 
pF1KB5 RSGMKIGRIEDVTPIPSDSTRRKGGRRGRRL
       :::::::::::::::::::::::::::::::
NP_005 RSGMKIGRIEDVTPIPSDSTRRKGGRRGRRL
              130       140       150 

>>XP_016865173 (OMIM: 130620,153550) PREDICTED: 40S ribo  (178 aa)
 initn: 842 init1: 842 opt: 848  Z-score: 1057.0  bits: 201.9 E(85289): 3.9e-52
Smith-Waterman score: 848; 96.3% identity (97.0% similar) in 135 aa overlap (1-135:1-135)

               10        20        30        40        50        60
pF1KB5 MAPRKGKEKKEEQVISLGPQVAEGENVFGVCHIFASFNDTFVHVTDLSGKETICRVTGGM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MAPRKGKEKKEEQVISLGPQVAEGENVFGVCHIFASFNDTFVHVTDLSGKETICRVTGGM
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 KVKADRDESSPYAAMLAAQDVAQRCKELGITALHIKLRATGGNRTKTPGPGAQSALRALA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 KVKADRDESSPYAAMLAAQDVAQRCKELGITALHIKLRATGGNRTKTPGPGAQSALRALA
               70        80        90       100       110       120

              130       140       150                            
pF1KB5 RSGMKIGRIEDVTPIPSDSTRRKGGRRGRRL                           
       :::::::::    :.                                           
XP_016 RSGMKIGRIGKCPPLANAWVYFEALAPKSTCCAQWMCSGWSGHFWQLSLLREAARGTL
              130       140       150       160       170        




151 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 03:46:13 2016 done: Fri Nov  4 03:46:13 2016
 Total Scan time:  5.110 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]