FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB5430, 151 aa
  1>>>pF1KB5430 151 - 151 aa - 151 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.2181+/-0.000607; mu= 12.6211+/- 0.037
 mean_var=63.6614+/-12.844, 0's: 0 Z-trim(111.4): 7  B-trim: 0 in 0/52
 Lambda= 0.160745
 statistics sampled from 12362 (12366) to 12362 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.764), E-opt: 0.2 (0.38), width:  16
 Scan time:  1.740

The best scores are:                                      opt bits E(32554)
CCDS4307.1 RPS14 gene_id:6208|Hs108|chr5           ( 151)  991 237.5 2.3e-63


>>CCDS4307.1 RPS14 gene_id:6208|Hs108|chr5                (151 aa)
 initn: 991 init1: 991 opt: 991  Z-score: 1251.0  bits: 237.5 E(32554): 2.3e-63
Smith-Waterman score: 991; 100.0% identity (100.0% similar) in 151 aa overlap (1-151:1-151)

               10        20        30        40        50        60
pF1KB5 MAPRKGKEKKEEQVISLGPQVAEGENVFGVCHIFASFNDTFVHVTDLSGKETICRVTGGM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 MAPRKGKEKKEEQVISLGPQVAEGENVFGVCHIFASFNDTFVHVTDLSGKETICRVTGGM
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 KVKADRDESSPYAAMLAAQDVAQRCKELGITALHIKLRATGGNRTKTPGPGAQSALRALA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 KVKADRDESSPYAAMLAAQDVAQRCKELGITALHIKLRATGGNRTKTPGPGAQSALRALA
               70        80        90       100       110       120

              130       140       150 
pF1KB5 RSGMKIGRIEDVTPIPSDSTRRKGGRRGRRL
       :::::::::::::::::::::::::::::::
CCDS43 RSGMKIGRIEDVTPIPSDSTRRKGGRRGRRL
              130       140       150 




151 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 03:46:12 2016 done: Fri Nov  4 03:46:12 2016
 Total Scan time:  1.740 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]