FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB5425, 130 aa
  1>>>pF1KB5425 130 - 130 aa - 130 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.8805+/-0.000296; mu= 13.2582+/- 0.019
 mean_var=66.1580+/-13.229, 0's: 0 Z-trim(118.1): 34  B-trim: 207 in 1/52
 Lambda= 0.157682
 statistics sampled from 30775 (30809) to 30775 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.752), E-opt: 0.2 (0.361), width:  16
 Scan time:  4.660

The best scores are:                                      opt bits E(85289)
NP_003759 (OMIM: 603434) astrocytic phosphoprotein ( 130)  829 196.5   1e-50
XP_006711662 (OMIM: 603434) PREDICTED: astrocytic  ( 130)  829 196.5   1e-50
NP_001284506 (OMIM: 603434) astrocytic phosphoprot ( 130)  829 196.5   1e-50
NP_001284505 (OMIM: 603434) astrocytic phosphoprot ( 151)  829 196.6 1.1e-50
NP_001284507 (OMIM: 603434) astrocytic phosphoprot ( 108)  466 113.9 6.3e-26


>>NP_003759 (OMIM: 603434) astrocytic phosphoprotein PEA  (130 aa)
 initn: 829 init1: 829 opt: 829  Z-score: 1031.6  bits: 196.5 E(85289): 1e-50
Smith-Waterman score: 829; 100.0% identity (100.0% similar) in 130 aa overlap (1-130:1-130)

               10        20        30        40        50        60
pF1KB5 MAEYGTLLQDLTNNITLEDLEQLKSACKEDIPSEKSEEITTGSAWFSFLESHNKLDKDNL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 MAEYGTLLQDLTNNITLEDLEQLKSACKEDIPSEKSEEITTGSAWFSFLESHNKLDKDNL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 SYIEHIFEISRRPDLLTMVVDYRTRVLKISEEDELDTKLTRIPSAKKYKDIIRQPSEEEI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 SYIEHIFEISRRPDLLTMVVDYRTRVLKISEEDELDTKLTRIPSAKKYKDIIRQPSEEEI
               70        80        90       100       110       120

              130
pF1KB5 IKLAPPPKKA
       ::::::::::
NP_003 IKLAPPPKKA
              130

>>XP_006711662 (OMIM: 603434) PREDICTED: astrocytic phos  (130 aa)
 initn: 829 init1: 829 opt: 829  Z-score: 1031.6  bits: 196.5 E(85289): 1e-50
Smith-Waterman score: 829; 100.0% identity (100.0% similar) in 130 aa overlap (1-130:1-130)

               10        20        30        40        50        60
pF1KB5 MAEYGTLLQDLTNNITLEDLEQLKSACKEDIPSEKSEEITTGSAWFSFLESHNKLDKDNL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 MAEYGTLLQDLTNNITLEDLEQLKSACKEDIPSEKSEEITTGSAWFSFLESHNKLDKDNL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 SYIEHIFEISRRPDLLTMVVDYRTRVLKISEEDELDTKLTRIPSAKKYKDIIRQPSEEEI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 SYIEHIFEISRRPDLLTMVVDYRTRVLKISEEDELDTKLTRIPSAKKYKDIIRQPSEEEI
               70        80        90       100       110       120

              130
pF1KB5 IKLAPPPKKA
       ::::::::::
XP_006 IKLAPPPKKA
              130

>>NP_001284506 (OMIM: 603434) astrocytic phosphoprotein   (130 aa)
 initn: 829 init1: 829 opt: 829  Z-score: 1031.6  bits: 196.5 E(85289): 1e-50
Smith-Waterman score: 829; 100.0% identity (100.0% similar) in 130 aa overlap (1-130:1-130)

               10        20        30        40        50        60
pF1KB5 MAEYGTLLQDLTNNITLEDLEQLKSACKEDIPSEKSEEITTGSAWFSFLESHNKLDKDNL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MAEYGTLLQDLTNNITLEDLEQLKSACKEDIPSEKSEEITTGSAWFSFLESHNKLDKDNL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 SYIEHIFEISRRPDLLTMVVDYRTRVLKISEEDELDTKLTRIPSAKKYKDIIRQPSEEEI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SYIEHIFEISRRPDLLTMVVDYRTRVLKISEEDELDTKLTRIPSAKKYKDIIRQPSEEEI
               70        80        90       100       110       120

              130
pF1KB5 IKLAPPPKKA
       ::::::::::
NP_001 IKLAPPPKKA
              130

>>NP_001284505 (OMIM: 603434) astrocytic phosphoprotein   (151 aa)
 initn: 829 init1: 829 opt: 829  Z-score: 1030.7  bits: 196.6 E(85289): 1.1e-50
Smith-Waterman score: 829; 100.0% identity (100.0% similar) in 130 aa overlap (1-130:22-151)

                                    10        20        30         
pF1KB5                      MAEYGTLLQDLTNNITLEDLEQLKSACKEDIPSEKSEEI
                            :::::::::::::::::::::::::::::::::::::::
NP_001 MEDEGNKLCQAPPWPGQTSPVMAEYGTLLQDLTNNITLEDLEQLKSACKEDIPSEKSEEI
               10        20        30        40        50        60

      40        50        60        70        80        90         
pF1KB5 TTGSAWFSFLESHNKLDKDNLSYIEHIFEISRRPDLLTMVVDYRTRVLKISEEDELDTKL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TTGSAWFSFLESHNKLDKDNLSYIEHIFEISRRPDLLTMVVDYRTRVLKISEEDELDTKL
               70        80        90       100       110       120

     100       110       120       130
pF1KB5 TRIPSAKKYKDIIRQPSEEEIIKLAPPPKKA
       :::::::::::::::::::::::::::::::
NP_001 TRIPSAKKYKDIIRQPSEEEIIKLAPPPKKA
              130       140       150 

>>NP_001284507 (OMIM: 603434) astrocytic phosphoprotein   (108 aa)
 initn: 466 init1: 466 opt: 466  Z-score: 586.5  bits: 113.9 E(85289): 6.3e-26
Smith-Waterman score: 625; 82.3% identity (83.1% similar) in 130 aa overlap (1-130:1-108)

               10        20        30        40        50        60
pF1KB5 MAEYGTLLQDLTNNITLEDLEQLKSACKEDIPSEKSEEITTGSAWFSFLESHNKLDKDNL
       :::::::::::::::::::::::::::::::::::                      .::
NP_001 MAEYGTLLQDLTNNITLEDLEQLKSACKEDIPSEK----------------------NNL
               10        20        30                              

               70        80        90       100       110       120
pF1KB5 SYIEHIFEISRRPDLLTMVVDYRTRVLKISEEDELDTKLTRIPSAKKYKDIIRQPSEEEI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SYIEHIFEISRRPDLLTMVVDYRTRVLKISEEDELDTKLTRIPSAKKYKDIIRQPSEEEI
       40        50        60        70        80        90        

              130
pF1KB5 IKLAPPPKKA
       ::::::::::
NP_001 IKLAPPPKKA
      100        




130 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 12:46:21 2016 done: Sat Nov  5 12:46:21 2016
 Total Scan time:  4.660 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]