FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB5425, 130 aa
  1>>>pF1KB5425 130 - 130 aa - 130 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.2318+/-0.000654; mu= 11.2627+/- 0.039
 mean_var=63.6396+/-12.660, 0's: 0 Z-trim(110.7): 16  B-trim: 150 in 1/52
 Lambda= 0.160772
 statistics sampled from 11765 (11780) to 11765 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.755), E-opt: 0.2 (0.362), width:  16
 Scan time:  1.750

The best scores are:                                      opt bits E(32554)
CCDS1199.1 PEA15 gene_id:8682|Hs108|chr1           ( 130)  829 200.1 3.2e-52
CCDS72954.1 PEA15 gene_id:8682|Hs108|chr1          ( 151)  829 200.1 3.6e-52
CCDS76227.1 PEA15 gene_id:8682|Hs108|chr1          ( 108)  466 115.9   6e-27


>>CCDS1199.1 PEA15 gene_id:8682|Hs108|chr1                (130 aa)
 initn: 829 init1: 829 opt: 829  Z-score: 1051.1  bits: 200.1 E(32554): 3.2e-52
Smith-Waterman score: 829; 100.0% identity (100.0% similar) in 130 aa overlap (1-130:1-130)

               10        20        30        40        50        60
pF1KB5 MAEYGTLLQDLTNNITLEDLEQLKSACKEDIPSEKSEEITTGSAWFSFLESHNKLDKDNL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MAEYGTLLQDLTNNITLEDLEQLKSACKEDIPSEKSEEITTGSAWFSFLESHNKLDKDNL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 SYIEHIFEISRRPDLLTMVVDYRTRVLKISEEDELDTKLTRIPSAKKYKDIIRQPSEEEI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 SYIEHIFEISRRPDLLTMVVDYRTRVLKISEEDELDTKLTRIPSAKKYKDIIRQPSEEEI
               70        80        90       100       110       120

              130
pF1KB5 IKLAPPPKKA
       ::::::::::
CCDS11 IKLAPPPKKA
              130

>>CCDS72954.1 PEA15 gene_id:8682|Hs108|chr1               (151 aa)
 initn: 829 init1: 829 opt: 829  Z-score: 1050.1  bits: 200.1 E(32554): 3.6e-52
Smith-Waterman score: 829; 100.0% identity (100.0% similar) in 130 aa overlap (1-130:22-151)

                                    10        20        30         
pF1KB5                      MAEYGTLLQDLTNNITLEDLEQLKSACKEDIPSEKSEEI
                            :::::::::::::::::::::::::::::::::::::::
CCDS72 MEDEGNKLCQAPPWPGQTSPVMAEYGTLLQDLTNNITLEDLEQLKSACKEDIPSEKSEEI
               10        20        30        40        50        60

      40        50        60        70        80        90         
pF1KB5 TTGSAWFSFLESHNKLDKDNLSYIEHIFEISRRPDLLTMVVDYRTRVLKISEEDELDTKL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 TTGSAWFSFLESHNKLDKDNLSYIEHIFEISRRPDLLTMVVDYRTRVLKISEEDELDTKL
               70        80        90       100       110       120

     100       110       120       130
pF1KB5 TRIPSAKKYKDIIRQPSEEEIIKLAPPPKKA
       :::::::::::::::::::::::::::::::
CCDS72 TRIPSAKKYKDIIRQPSEEEIIKLAPPPKKA
              130       140       150 

>>CCDS76227.1 PEA15 gene_id:8682|Hs108|chr1               (108 aa)
 initn: 466 init1: 466 opt: 466  Z-score: 597.2  bits: 115.9 E(32554): 6e-27
Smith-Waterman score: 625; 82.3% identity (83.1% similar) in 130 aa overlap (1-130:1-108)

               10        20        30        40        50        60
pF1KB5 MAEYGTLLQDLTNNITLEDLEQLKSACKEDIPSEKSEEITTGSAWFSFLESHNKLDKDNL
       :::::::::::::::::::::::::::::::::::                      .::
CCDS76 MAEYGTLLQDLTNNITLEDLEQLKSACKEDIPSEK----------------------NNL
               10        20        30                              

               70        80        90       100       110       120
pF1KB5 SYIEHIFEISRRPDLLTMVVDYRTRVLKISEEDELDTKLTRIPSAKKYKDIIRQPSEEEI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 SYIEHIFEISRRPDLLTMVVDYRTRVLKISEEDELDTKLTRIPSAKKYKDIIRQPSEEEI
       40        50        60        70        80        90        

              130
pF1KB5 IKLAPPPKKA
       ::::::::::
CCDS76 IKLAPPPKKA
      100        




130 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 12:46:20 2016 done: Sat Nov  5 12:46:20 2016
 Total Scan time:  1.750 Total Display time: -0.040

Function used was FASTA [36.3.4 Apr, 2011]