Result of FASTA (ccds) for pF1KB5422 
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB5422, 224 aa
  1>>>pF1KB5422 224 - 224 aa - 224 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.2449+/-0.000593; mu= 11.0408+/- 0.036
 mean_var=97.8707+/-19.715, 0's: 0 Z-trim(114.5): 14  B-trim: 0 in 0/53
 Lambda= 0.129643
 statistics sampled from 15031 (15045) to 15031 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.802), E-opt: 0.2 (0.462), width:  16
 Scan time:  2.400

The best scores are:                                      opt bits E(32554)
CCDS131.1 FBXO44 gene_id:93611|Hs108|chr1          ( 224) 1583 305.3 2.1e-83
CCDS132.1 FBXO44 gene_id:93611|Hs108|chr1          ( 255)  874 172.7 1.9e-43
CCDS81261.1 FBXO44 gene_id:93611|Hs108|chr1        ( 256)  866 171.2 5.5e-43
CCDS133.1 FBXO6 gene_id:26270|Hs108|chr1           ( 293)  692 138.7 3.8e-33
CCDS130.1 FBXO2 gene_id:26232|Hs108|chr1           ( 296)  367 77.9 7.7e-15


>>CCDS131.1 FBXO44 gene_id:93611|Hs108|chr1               (224 aa)
 initn: 1583 init1: 1583 opt: 1583  Z-score: 1610.8  bits: 305.3 E(32554): 2.1e-83
Smith-Waterman score: 1583; 100.0% identity (100.0% similar) in 224 aa overlap (1-224:1-224)

               10        20        30        40        50        60
pF1KB5 MAVGNINELPENILLELFTHVPARQLLLNCRLVCSLWRDLIDLVTLWKRKCLREGFITED
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MAVGNINELPENILLELFTHVPARQLLLNCRLVCSLWRDLIDLVTLWKRKCLREGFITED
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 WDQPVADWKIFYFLRSLHRNLLHNPCAEEGFEFWSLDVNGGDEWKVEDLSRDQRKEFPND
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 WDQPVADWKIFYFLRSLHRNLLHNPCAEEGFEFWSLDVNGGDEWKVEDLSRDQRKEFPND
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB5 QVRSQARLRVQVPAVRSAPVVRARASGDLPARPGDHPAEERCQVEGGLPHILQLPARRPL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 QVRSQARLRVQVPAVRSAPVVRARASGDLPARPGDHPAEERCQVEGGLPHILQLPARRPL
              130       140       150       160       170       180

              190       200       210       220    
pF1KB5 HLVSARRRGHSLLGRLVRPEGHQQQHHHRAPAALTPPEPPSAEP
       ::::::::::::::::::::::::::::::::::::::::::::
CCDS13 HLVSARRRGHSLLGRLVRPEGHQQQHHHRAPAALTPPEPPSAEP
              190       200       210       220    

>>CCDS132.1 FBXO44 gene_id:93611|Hs108|chr1               (255 aa)
 initn: 874 init1: 874 opt: 874  Z-score: 893.3  bits: 172.7 E(32554): 1.9e-43
Smith-Waterman score: 874; 99.2% identity (100.0% similar) in 123 aa overlap (1-123:1-123)

               10        20        30        40        50        60
pF1KB5 MAVGNINELPENILLELFTHVPARQLLLNCRLVCSLWRDLIDLVTLWKRKCLREGFITED
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MAVGNINELPENILLELFTHVPARQLLLNCRLVCSLWRDLIDLVTLWKRKCLREGFITED
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 WDQPVADWKIFYFLRSLHRNLLHNPCAEEGFEFWSLDVNGGDEWKVEDLSRDQRKEFPND
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 WDQPVADWKIFYFLRSLHRNLLHNPCAEEGFEFWSLDVNGGDEWKVEDLSRDQRKEFPND
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB5 QVRSQARLRVQVPAVRSAPVVRARASGDLPARPGDHPAEERCQVEGGLPHILQLPARRPL
       ::.                                                         
CCDS13 QVKKYFVTSYYTCLKSQVVDLKAEGYWEELMDTTRPDIEVKDWFAARPDCGSKYQLCVQL
              130       140       150       160       170       180

>>CCDS81261.1 FBXO44 gene_id:93611|Hs108|chr1             (256 aa)
 initn: 1569 init1: 866 opt: 866  Z-score: 885.2  bits: 171.2 E(32554): 5.5e-43
Smith-Waterman score: 1509; 87.5% identity (87.5% similar) in 256 aa overlap (1-224:1-256)

               10        20        30        40        50        60
pF1KB5 MAVGNINELPENILLELFTHVPARQLLLNCRLVCSLWRDLIDLVTLWKRKCLREGFITED
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 MAVGNINELPENILLELFTHVPARQLLLNCRLVCSLWRDLIDLVTLWKRKCLREGFITED
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 WDQPVADWKIFYFLRSLHRNLLHNPCAEEGFEFWSLDVNGGDEWKVEDLSRDQRKEFPND
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 WDQPVADWKIFYFLRSLHRNLLHNPCAEEGFEFWSLDVNGGDEWKVEDLSRDQRKEFPND
               70        80        90       100       110       120

                                              130       140        
pF1KB5 Q--------------------------------VRSQARLRVQVPAVRSAPVVRARASGD
       :                                :::::::::::::::::::::::::::
CCDS81 QHLPQVPGGGPQGRRVLGGADGYHTAGHRGQGLVRSQARLRVQVPAVRSAPVVRARASGD
              130       140       150       160       170       180

      150       160       170       180       190       200        
pF1KB5 LPARPGDHPAEERCQVEGGLPHILQLPARRPLHLVSARRRGHSLLGRLVRPEGHQQQHHH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 LPARPGDHPAEERCQVEGGLPHILQLPARRPLHLVSARRRGHSLLGRLVRPEGHQQQHHH
              190       200       210       220       230       240

      210       220    
pF1KB5 RAPAALTPPEPPSAEP
       ::::::::::::::::
CCDS81 RAPAALTPPEPPSAEP
              250      

>>CCDS133.1 FBXO6 gene_id:26270|Hs108|chr1                (293 aa)
 initn: 686 init1: 686 opt: 692  Z-score: 708.5  bits: 138.7 E(32554): 3.8e-33
Smith-Waterman score: 692; 78.7% identity (91.0% similar) in 122 aa overlap (2-123:9-130)

                      10        20        30        40        50   
pF1KB5        MAVGNINELPENILLELFTHVPARQLLLNCRLVCSLWRDLIDLVTLWKRKCLR
               :. .::::::::::::::::::::::::::::::::::::::.:::::::::
CCDS13 MDAPHSKAALDSINELPENILLELFTHVPARQLLLNCRLVCSLWRDLIDLMTLWKRKCLR
               10        20        30        40        50        60

            60        70        80        90       100       110   
pF1KB5 EGFITEDWDQPVADWKIFYFLRSLHRNLLHNPCAEEGFEFWSLDVNGGDEWKVEDLSRDQ
       :::::.:::::::::::::::::::::::.:::::: .  :..: ::::.::::.:   .
CCDS13 EGFITKDWDQPVADWKIFYFLRSLHRNLLRNPCAEEDMFAWQIDFNGGDRWKVESLPGAH
               70        80        90       100       110       120

           120       130       140       150       160       170   
pF1KB5 RKEFPNDQVRSQARLRVQVPAVRSAPVVRARASGDLPARPGDHPAEERCQVEGGLPHILQ
         .::. .:.                                                  
CCDS13 GTDFPDPKVKKYFVTSYEMCLKSQLVDLVAEGYWEELLDTFRPDIVVKDWFAARADCGCT
              130       140       150       160       170       180

>>CCDS130.1 FBXO2 gene_id:26232|Hs108|chr1                (296 aa)
 initn: 364 init1: 190 opt: 367  Z-score: 379.9  bits: 77.9 E(32554): 7.7e-15
Smith-Waterman score: 367; 40.5% identity (66.2% similar) in 148 aa overlap (2-147:43-188)

                                            10        20        30 
pF1KB5                              MAVGNINELPENILLELFTHVPARQLLLNCR
                                     :.. ..:::: .::.... .:: .:.  ::
CCDS13 PEEASPEEQPEEASAEEERPEDQQEEEAAAAAAYLDELPEPLLLRVLAALPAAELVQACR
             20        30        40        50        60        70  

              40        50        60         70        80        90
pF1KB5 LVCSLWRDLIDLVTLWKRKCLREGFITEDWDQPVAD-WKIFYFLRSLHRNLLHNPCAEEG
       :::  :..:.: . ::  :: .::.. :   .   : :. :::: . .::::.:::.:: 
CCDS13 LVCLRWKELVDGAPLWLLKCQQEGLVPEGGVEEERDHWQQFYFLSKRRRNLLRNPCGEED
             80        90       100       110       120       130  

               100       110       120       130       140         
pF1KB5 FEFWSLDV-NGGDEWKVEDLSRDQRKEFPNDQVRSQARLRVQVPAVRSAPVVRARASGDL
       .: :  :: .::: :.::.:  :.  :: .:.   .  .  .    :.: :.  .: :  
CCDS13 LEGWC-DVEHGGDGWRVEELPGDSGVEFTHDE-SVKKYFASSFEWCRKAQVIDLQAEGYW
             140       150       160        170       180       190

     150       160       170       180       190       200         
pF1KB5 PARPGDHPAEERCQVEGGLPHILQLPARRPLHLVSARRRGHSLLGRLVRPEGHQQQHHHR
                                                                   
CCDS13 EELLDTTQPAIVVKDWYSGRSDAGCLYELTVKLLSEHENVLAEFSSGQVAVPQDSDGGGW
              200       210       220       230       240       250




224 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 12:45:27 2016 done: Sat Nov  5 12:45:27 2016
 Total Scan time:  2.400 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]
Inquiries or Suggestions ?
Send a message to flexiclone AT kazusagt.com