FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB5413, 213 aa
  1>>>pF1KB5413 213 - 213 aa - 213 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.8063+/-0.000881; mu= 15.7185+/- 0.052
 mean_var=53.5848+/-11.028, 0's: 0 Z-trim(104.2): 21  B-trim: 0 in 0/46
 Lambda= 0.175208
 statistics sampled from 7788 (7796) to 7788 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.619), E-opt: 0.2 (0.239), width:  16
 Scan time:  1.900

The best scores are:                                      opt bits E(32554)
CCDS10657.1 CDIPT gene_id:10423|Hs108|chr16        ( 213) 1413 365.0 1.9e-101
CCDS67002.1 CDIPT gene_id:10423|Hs108|chr16        ( 168) 1012 263.6 5.1e-71


>>CCDS10657.1 CDIPT gene_id:10423|Hs108|chr16             (213 aa)
 initn: 1413 init1: 1413 opt: 1413  Z-score: 1934.8  bits: 365.0 E(32554): 1.9e-101
Smith-Waterman score: 1413; 100.0% identity (100.0% similar) in 213 aa overlap (1-213:1-213)

               10        20        30        40        50        60
pF1KB5 MPDENIFLFVPNLIGYARIVFAIISFYFMPCCPLTASSFYLLSGLLDAFDGHAARALNQG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 MPDENIFLFVPNLIGYARIVFAIISFYFMPCCPLTASSFYLLSGLLDAFDGHAARALNQG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 TRFGAMLDMLTDRCSTMCLLVNLALLYPGATLFFQISMSLDVASHWLHLHSSVVRGSESH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 TRFGAMLDMLTDRCSTMCLLVNLALLYPGATLFFQISMSLDVASHWLHLHSSVVRGSESH
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB5 KMIDLSGNPVLRIYYTSRPALFTLCAGNELFYCLLYLFHFSEGPLVGSVGLFRMGLWVTA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 KMIDLSGNPVLRIYYTSRPALFTLCAGNELFYCLLYLFHFSEGPLVGSVGLFRMGLWVTA
              130       140       150       160       170       180

              190       200       210   
pF1KB5 PIALLKSLISVIHLITAARNMAALDAADRAKKK
       :::::::::::::::::::::::::::::::::
CCDS10 PIALLKSLISVIHLITAARNMAALDAADRAKKK
              190       200       210   

>>CCDS67002.1 CDIPT gene_id:10423|Hs108|chr16             (168 aa)
 initn: 1012 init1: 1012 opt: 1012  Z-score: 1388.5  bits: 263.6 E(32554): 5.1e-71
Smith-Waterman score: 1012; 100.0% identity (100.0% similar) in 154 aa overlap (60-213:15-168)

      30        40        50        60        70        80         
pF1KB5 PCCPLTASSFYLLSGLLDAFDGHAARALNQGTRFGAMLDMLTDRCSTMCLLVNLALLYPG
                                     ::::::::::::::::::::::::::::::
CCDS67                 MPDENIFLFVPNLIGTRFGAMLDMLTDRCSTMCLLVNLALLYPG
                               10        20        30        40    

      90       100       110       120       130       140         
pF1KB5 ATLFFQISMSLDVASHWLHLHSSVVRGSESHKMIDLSGNPVLRIYYTSRPALFTLCAGNE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS67 ATLFFQISMSLDVASHWLHLHSSVVRGSESHKMIDLSGNPVLRIYYTSRPALFTLCAGNE
           50        60        70        80        90       100    

     150       160       170       180       190       200         
pF1KB5 LFYCLLYLFHFSEGPLVGSVGLFRMGLWVTAPIALLKSLISVIHLITAARNMAALDAADR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS67 LFYCLLYLFHFSEGPLVGSVGLFRMGLWVTAPIALLKSLISVIHLITAARNMAALDAADR
          110       120       130       140       150       160    

     210   
pF1KB5 AKKK
       ::::
CCDS67 AKKK
           




213 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 12:44:14 2016 done: Sat Nov  5 12:44:15 2016
 Total Scan time:  1.900 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]