FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB5408, 417 aa
  1>>>pF1KB5408 417 - 417 aa - 417 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.2843+/-0.000824; mu= 12.7051+/- 0.049
 mean_var=100.2415+/-20.394, 0's: 0 Z-trim(109.9): 62  B-trim: 0 in 0/51
 Lambda= 0.128100
 statistics sampled from 11165 (11210) to 11165 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.713), E-opt: 0.2 (0.344), width:  16
 Scan time:  3.070

The best scores are:                                      opt bits E(32554)
CCDS1738.1 PREB gene_id:10113|Hs108|chr2           ( 417) 2803 528.4 4.7e-150
CCDS82431.1 PREB gene_id:10113|Hs108|chr2          ( 359) 1674 319.8 2.7e-87


>>CCDS1738.1 PREB gene_id:10113|Hs108|chr2                (417 aa)
 initn: 2803 init1: 2803 opt: 2803  Z-score: 2807.4  bits: 528.4 E(32554): 4.7e-150
Smith-Waterman score: 2803; 100.0% identity (100.0% similar) in 417 aa overlap (1-417:1-417)

               10        20        30        40        50        60
pF1KB5 MGRRRAPELYRAPFPLYALQVDPSTGLLIAAGGGGAAKTGIKNGVHFLQLELINGRLSAS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS17 MGRRRAPELYRAPFPLYALQVDPSTGLLIAAGGGGAAKTGIKNGVHFLQLELINGRLSAS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 LLHSHDTETRATMNLALAGDILAAGQDAHCQLLRFQAHQQQGNKAEKAGSKEQGPRQRKG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS17 LLHSHDTETRATMNLALAGDILAAGQDAHCQLLRFQAHQQQGNKAEKAGSKEQGPRQRKG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB5 AAPAEKKCGAETQHEGLELRVENLQAVQTDFSSDPLQKVVCFNHDNTLLATGGTDGYVRV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS17 AAPAEKKCGAETQHEGLELRVENLQAVQTDFSSDPLQKVVCFNHDNTLLATGGTDGYVRV
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB5 WKVPSLEKVLEFKAHEGEIEDLALGPDGKLVTVGRDLKASVWQKDQLVTQLHWQENGPTF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS17 WKVPSLEKVLEFKAHEGEIEDLALGPDGKLVTVGRDLKASVWQKDQLVTQLHWQENGPTF
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB5 SSTPYRYQACRFGQVPDQPAGLRLFTVQIPHKRLRQPPPCYLTAWDGSNFLPLRTKSCGH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS17 SSTPYRYQACRFGQVPDQPAGLRLFTVQIPHKRLRQPPPCYLTAWDGSNFLPLRTKSCGH
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB5 EVVSCLDVSESGTFLGLGTVTGSVAIYIAFSLQCLYYVREAHGIVVTDVAFLPEKGRGPE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS17 EVVSCLDVSESGTFLGLGTVTGSVAIYIAFSLQCLYYVREAHGIVVTDVAFLPEKGRGPE
              310       320       330       340       350       360

              370       380       390       400       410       
pF1KB5 LLGSHETALFSVAVDSRCQLHLLPSRRSVPVWLLLLLCVGLIIVTILLLQSAFPGFL
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS17 LLGSHETALFSVAVDSRCQLHLLPSRRSVPVWLLLLLCVGLIIVTILLLQSAFPGFL
              370       380       390       400       410       

>>CCDS82431.1 PREB gene_id:10113|Hs108|chr2               (359 aa)
 initn: 2364 init1: 1674 opt: 1674  Z-score: 1680.7  bits: 319.8 E(32554): 2.7e-87
Smith-Waterman score: 2252; 86.1% identity (86.1% similar) in 417 aa overlap (1-417:1-359)

               10        20        30        40        50        60
pF1KB5 MGRRRAPELYRAPFPLYALQVDPSTGLLIAAGGGGAAKTGIKNGVHFLQLELINGRLSAS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 MGRRRAPELYRAPFPLYALQVDPSTGLLIAAGGGGAAKTGIKNGVHFLQLELINGRLSAS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 LLHSHDTETRATMNLALAGDILAAGQDAHCQLLRFQAHQQQGNKAEKAGSKEQGPRQRKG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 LLHSHDTETRATMNLALAGDILAAGQDAHCQLLRFQAHQQQGNKAEKAGSKEQGPRQRKG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB5 AAPAEKKCGAETQHEGLELRVENLQAVQTDFSSDPLQKVVCFNHDNTLLATGGTDGYVRV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 AAPAEKKCGAETQHEGLELRVENLQAVQTDFSSDPLQKVVCFNHDNTLLATGGTDGYVRV
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB5 WKVPSLEKVLEFKAHEGEIEDLALGPDGKLVTVGRDLKASVWQKDQLVTQLHWQENGPTF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 WKVPSLEKVLEFKAHEGEIEDLALGPDGKLVTVGRDLKASVWQKDQLVTQLHWQENGPTF
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB5 SSTPYRYQACRFGQVPDQPAGLRLFTVQIPHKRLRQPPPCYLTAWDGSNFLPLRTKSCGH
       ::::::::::                                                  
CCDS82 SSTPYRYQAC--------------------------------------------------
              250                                                  

              310       320       330       340       350       360
pF1KB5 EVVSCLDVSESGTFLGLGTVTGSVAIYIAFSLQCLYYVREAHGIVVTDVAFLPEKGRGPE
               ::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 --------SESGTFLGLGTVTGSVAIYIAFSLQCLYYVREAHGIVVTDVAFLPEKGRGPE
                      260       270       280       290       300  

              370       380       390       400       410       
pF1KB5 LLGSHETALFSVAVDSRCQLHLLPSRRSVPVWLLLLLCVGLIIVTILLLQSAFPGFL
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 LLGSHETALFSVAVDSRCQLHLLPSRRSVPVWLLLLLCVGLIIVTILLLQSAFPGFL
            310       320       330       340       350         




417 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 00:58:53 2016 done: Sat Nov  5 00:58:54 2016
 Total Scan time:  3.070 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]