Result of FASTA (ccds) for
pF1KB5403
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB5403, 913 aa
1>>>pF1KB5403 913 - 913 aa - 913 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 9.3480+/-0.00133; mu= 2.7948+/- 0.080
mean_var=236.6573+/-46.730, 0's: 0 Z-trim(108.0): 46 B-trim: 0 in 0/51
Lambda= 0.083371
statistics sampled from 9899 (9928) to 9899 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.638), E-opt: 0.2 (0.305), width: 16
Scan time: 4.320
The best scores are: opt bits E(32554)
CCDS10638.1 EIF3C gene_id:8663|Hs108|chr16 ( 913) 5994 735.2 1.3e-211
CCDS42136.1 EIF3CL gene_id:728689|Hs108|chr16 ( 914) 5982 733.7 3.6e-211
CCDS66993.1 EIF3C gene_id:8663|Hs108|chr16 ( 903) 5175 636.7 6e-182
>>CCDS10638.1 EIF3C gene_id:8663|Hs108|chr16 (913 aa)
initn: 5994 init1: 5994 opt: 5994 Z-score: 3912.4 bits: 735.2 E(32554): 1.3e-211
Smith-Waterman score: 5994; 100.0% identity (100.0% similar) in 913 aa overlap (1-913:1-913)
10 20 30 40 50 60
pF1KB5 MSRFFTTGSDSESESSLSGEELVTKPVGGNYGKQPLLLSEDEEDTKRVVRSAKDKRFEEL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 MSRFFTTGSDSESESSLSGEELVTKPVGGNYGKQPLLLSEDEEDTKRVVRSAKDKRFEEL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 TNLIRTIRNAMKIRDVTKCLEEFELLGKAYGKAKSIVDKEGVPRFYIRILADLEDYLNEL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 TNLIRTIRNAMKIRDVTKCLEEFELLGKAYGKAKSIVDKEGVPRFYIRILADLEDYLNEL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB5 WEDKEGKKKMNKNNAKALSTLRQKIRKYNRDFESHITSYKQNPEQSADEDAEKNEEDSEG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 WEDKEGKKKMNKNNAKALSTLRQKIRKYNRDFESHITSYKQNPEQSADEDAEKNEEDSEG
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB5 SSDEDEDEDGVSAATFLKKKSEAPSGESRKFLKKMDDEDEDSEDSEDDEDWDTGSTSSDS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 SSDEDEDEDGVSAATFLKKKSEAPSGESRKFLKKMDDEDEDSEDSEDDEDWDTGSTSSDS
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB5 DSEEEEGKQTALASRFLKKAPTTDEDKKAAEKKREDKAKKKHDRKSKRLDEEEEDNEGGE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 DSEEEEGKQTALASRFLKKAPTTDEDKKAAEKKREDKAKKKHDRKSKRLDEEEEDNEGGE
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB5 WERVRGGVPLVKEKPKMFAKGTEITHAVVIKKLNEILQARGKKGTDRAAQIELLQLLVQI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 WERVRGGVPLVKEKPKMFAKGTEITHAVVIKKLNEILQARGKKGTDRAAQIELLQLLVQI
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB5 AAENNLGEGVIVKIKFNIIASLYDYNPNLATYMKPEMWGKCLDCINELMDILFANPNIFV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 AAENNLGEGVIVKIKFNIIASLYDYNPNLATYMKPEMWGKCLDCINELMDILFANPNIFV
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB5 GENILEESENLHNADQPLRVRGCILTLVERMDEEFTKIMQNTDPHSQEYVEHLKDEAQVC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 GENILEESENLHNADQPLRVRGCILTLVERMDEEFTKIMQNTDPHSQEYVEHLKDEAQVC
430 440 450 460 470 480
490 500 510 520 530 540
pF1KB5 AIIERVQRYLEEKGTTEEVCRIYLLRILHTYYKFDYKAHQRQLTPPEGSSKSEQDQAENE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 AIIERVQRYLEEKGTTEEVCRIYLLRILHTYYKFDYKAHQRQLTPPEGSSKSEQDQAENE
490 500 510 520 530 540
550 560 570 580 590 600
pF1KB5 GEDSAVLMERLCKYIYAKDRTDRIRTCAILCHIYHHALHSRWYQARDLMLMSHLQDNIQH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 GEDSAVLMERLCKYIYAKDRTDRIRTCAILCHIYHHALHSRWYQARDLMLMSHLQDNIQH
550 560 570 580 590 600
610 620 630 640 650 660
pF1KB5 ADPPVQILYNRTMVQLGICAFRQGLTKDAHNALLDIQSSGRAKELLGQGLLLRSLQERNQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 ADPPVQILYNRTMVQLGICAFRQGLTKDAHNALLDIQSSGRAKELLGQGLLLRSLQERNQ
610 620 630 640 650 660
670 680 690 700 710 720
pF1KB5 EQEKVERRRQVPFHLHINLELLECVYLVSAMLLEIPYMAAHESDARRRMISKQFHHQLRV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 EQEKVERRRQVPFHLHINLELLECVYLVSAMLLEIPYMAAHESDARRRMISKQFHHQLRV
670 680 690 700 710 720
730 740 750 760 770 780
pF1KB5 GERQPLLGPPESMREHVVAASKAMKMGDWKTCHSFIINEKMNGKVWDLFPEADKVRTMLV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 GERQPLLGPPESMREHVVAASKAMKMGDWKTCHSFIINEKMNGKVWDLFPEADKVRTMLV
730 740 750 760 770 780
790 800 810 820 830 840
pF1KB5 RKIQEESLRTYLFTYSSVYDSISMETLSDMFELDLPTVHSIISKMIINEELMASLDQPTQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 RKIQEESLRTYLFTYSSVYDSISMETLSDMFELDLPTVHSIISKMIINEELMASLDQPTQ
790 800 810 820 830 840
850 860 870 880 890 900
pF1KB5 TVVMHRTEPTAQQNLALQLAEKLGSLVENNERVFDHKQGTYGGYFRDQKDGYRKNEGYMR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 TVVMHRTEPTAQQNLALQLAEKLGSLVENNERVFDHKQGTYGGYFRDQKDGYRKNEGYMR
850 860 870 880 890 900
910
pF1KB5 RGGYRQQQSQTAY
:::::::::::::
CCDS10 RGGYRQQQSQTAY
910
>>CCDS42136.1 EIF3CL gene_id:728689|Hs108|chr16 (914 aa)
initn: 4188 init1: 4188 opt: 5982 Z-score: 3904.6 bits: 733.7 E(32554): 3.6e-211
Smith-Waterman score: 5982; 99.9% identity (99.9% similar) in 914 aa overlap (1-913:1-914)
10 20 30 40 50 60
pF1KB5 MSRFFTTGSDSESESSLSGEELVTKPVGGNYGKQPLLLSEDEEDTKRVVRSAKDKRFEEL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 MSRFFTTGSDSESESSLSGEELVTKPVGGNYGKQPLLLSEDEEDTKRVVRSAKDKRFEEL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 TNLIRTIRNAMKIRDVTKCLEEFELLGKAYGKAKSIVDKEGVPRFYIRILADLEDYLNEL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 TNLIRTIRNAMKIRDVTKCLEEFELLGKAYGKAKSIVDKEGVPRFYIRILADLEDYLNEL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB5 WEDKEGKKKMNKNNAKALSTLRQKIRKYNRDFESHITSYKQNPEQSADEDAEKNEEDSEG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 WEDKEGKKKMNKNNAKALSTLRQKIRKYNRDFESHITSYKQNPEQSADEDAEKNEEDSEG
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB5 SSDEDEDEDGVSAATFLKKKSEAPSGESRKFLKKMDDEDEDSEDSEDDEDWDTGSTSSDS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 SSDEDEDEDGVSAATFLKKKSEAPSGESRKFLKKMDDEDEDSEDSEDDEDWDTGSTSSDS
190 200 210 220 230 240
250 260 270 280 290
pF1KB5 DSEEEEGKQTALASRFLKKAPTTDEDKKAAEKKREDKAKKKHDRKSKRLDEEEE-DNEGG
:::::::::::::::::::::::::::::::::::::::::::::::::::::: :::::
CCDS42 DSEEEEGKQTALASRFLKKAPTTDEDKKAAEKKREDKAKKKHDRKSKRLDEEEEEDNEGG
250 260 270 280 290 300
300 310 320 330 340 350
pF1KB5 EWERVRGGVPLVKEKPKMFAKGTEITHAVVIKKLNEILQARGKKGTDRAAQIELLQLLVQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 EWERVRGGVPLVKEKPKMFAKGTEITHAVVIKKLNEILQARGKKGTDRAAQIELLQLLVQ
310 320 330 340 350 360
360 370 380 390 400 410
pF1KB5 IAAENNLGEGVIVKIKFNIIASLYDYNPNLATYMKPEMWGKCLDCINELMDILFANPNIF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 IAAENNLGEGVIVKIKFNIIASLYDYNPNLATYMKPEMWGKCLDCINELMDILFANPNIF
370 380 390 400 410 420
420 430 440 450 460 470
pF1KB5 VGENILEESENLHNADQPLRVRGCILTLVERMDEEFTKIMQNTDPHSQEYVEHLKDEAQV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 VGENILEESENLHNADQPLRVRGCILTLVERMDEEFTKIMQNTDPHSQEYVEHLKDEAQV
430 440 450 460 470 480
480 490 500 510 520 530
pF1KB5 CAIIERVQRYLEEKGTTEEVCRIYLLRILHTYYKFDYKAHQRQLTPPEGSSKSEQDQAEN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 CAIIERVQRYLEEKGTTEEVCRIYLLRILHTYYKFDYKAHQRQLTPPEGSSKSEQDQAEN
490 500 510 520 530 540
540 550 560 570 580 590
pF1KB5 EGEDSAVLMERLCKYIYAKDRTDRIRTCAILCHIYHHALHSRWYQARDLMLMSHLQDNIQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 EGEDSAVLMERLCKYIYAKDRTDRIRTCAILCHIYHHALHSRWYQARDLMLMSHLQDNIQ
550 560 570 580 590 600
600 610 620 630 640 650
pF1KB5 HADPPVQILYNRTMVQLGICAFRQGLTKDAHNALLDIQSSGRAKELLGQGLLLRSLQERN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 HADPPVQILYNRTMVQLGICAFRQGLTKDAHNALLDIQSSGRAKELLGQGLLLRSLQERN
610 620 630 640 650 660
660 670 680 690 700 710
pF1KB5 QEQEKVERRRQVPFHLHINLELLECVYLVSAMLLEIPYMAAHESDARRRMISKQFHHQLR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 QEQEKVERRRQVPFHLHINLELLECVYLVSAMLLEIPYMAAHESDARRRMISKQFHHQLR
670 680 690 700 710 720
720 730 740 750 760 770
pF1KB5 VGERQPLLGPPESMREHVVAASKAMKMGDWKTCHSFIINEKMNGKVWDLFPEADKVRTML
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 VGERQPLLGPPESMREHVVAASKAMKMGDWKTCHSFIINEKMNGKVWDLFPEADKVRTML
730 740 750 760 770 780
780 790 800 810 820 830
pF1KB5 VRKIQEESLRTYLFTYSSVYDSISMETLSDMFELDLPTVHSIISKMIINEELMASLDQPT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 VRKIQEESLRTYLFTYSSVYDSISMETLSDMFELDLPTVHSIISKMIINEELMASLDQPT
790 800 810 820 830 840
840 850 860 870 880 890
pF1KB5 QTVVMHRTEPTAQQNLALQLAEKLGSLVENNERVFDHKQGTYGGYFRDQKDGYRKNEGYM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 QTVVMHRTEPTAQQNLALQLAEKLGSLVENNERVFDHKQGTYGGYFRDQKDGYRKNEGYM
850 860 870 880 890 900
900 910
pF1KB5 RRGGYRQQQSQTAY
::::::::::::::
CCDS42 RRGGYRQQQSQTAY
910
>>CCDS66993.1 EIF3C gene_id:8663|Hs108|chr16 (903 aa)
initn: 5172 init1: 5172 opt: 5175 Z-score: 3380.0 bits: 636.7 E(32554): 6e-182
Smith-Waterman score: 5892; 98.9% identity (98.9% similar) in 913 aa overlap (1-913:1-903)
10 20 30 40 50 60
pF1KB5 MSRFFTTGSDSESESSLSGEELVTKPVGGNYGKQPLLLSEDEEDTKRVVRSAKDKRFEEL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 MSRFFTTGSDSESESSLSGEELVTKPVGGNYGKQPLLLSEDEEDTKRVVRSAKDKRFEEL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 TNLIRTIRNAMKIRDVTKCLEEFELLGKAYGKAKSIVDKEGVPRFYIRILADLEDYLNEL
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 TNLIRTIRNAMKIRDVTKCLEEFELLGKAYGKAKSIVDKEGVPRFYIRILADLEDYLNE-
70 80 90 100 110
130 140 150 160 170 180
pF1KB5 WEDKEGKKKMNKNNAKALSTLRQKIRKYNRDFESHITSYKQNPEQSADEDAEKNEEDSEG
:::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 ---------MNKNNAKALSTLRQKIRKYNRDFESHITSYKQNPEQSADEDAEKNEEDSEG
120 130 140 150 160 170
190 200 210 220 230 240
pF1KB5 SSDEDEDEDGVSAATFLKKKSEAPSGESRKFLKKMDDEDEDSEDSEDDEDWDTGSTSSDS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 SSDEDEDEDGVSAATFLKKKSEAPSGESRKFLKKMDDEDEDSEDSEDDEDWDTGSTSSDS
180 190 200 210 220 230
250 260 270 280 290 300
pF1KB5 DSEEEEGKQTALASRFLKKAPTTDEDKKAAEKKREDKAKKKHDRKSKRLDEEEEDNEGGE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 DSEEEEGKQTALASRFLKKAPTTDEDKKAAEKKREDKAKKKHDRKSKRLDEEEEDNEGGE
240 250 260 270 280 290
310 320 330 340 350 360
pF1KB5 WERVRGGVPLVKEKPKMFAKGTEITHAVVIKKLNEILQARGKKGTDRAAQIELLQLLVQI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 WERVRGGVPLVKEKPKMFAKGTEITHAVVIKKLNEILQARGKKGTDRAAQIELLQLLVQI
300 310 320 330 340 350
370 380 390 400 410 420
pF1KB5 AAENNLGEGVIVKIKFNIIASLYDYNPNLATYMKPEMWGKCLDCINELMDILFANPNIFV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 AAENNLGEGVIVKIKFNIIASLYDYNPNLATYMKPEMWGKCLDCINELMDILFANPNIFV
360 370 380 390 400 410
430 440 450 460 470 480
pF1KB5 GENILEESENLHNADQPLRVRGCILTLVERMDEEFTKIMQNTDPHSQEYVEHLKDEAQVC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 GENILEESENLHNADQPLRVRGCILTLVERMDEEFTKIMQNTDPHSQEYVEHLKDEAQVC
420 430 440 450 460 470
490 500 510 520 530 540
pF1KB5 AIIERVQRYLEEKGTTEEVCRIYLLRILHTYYKFDYKAHQRQLTPPEGSSKSEQDQAENE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 AIIERVQRYLEEKGTTEEVCRIYLLRILHTYYKFDYKAHQRQLTPPEGSSKSEQDQAENE
480 490 500 510 520 530
550 560 570 580 590 600
pF1KB5 GEDSAVLMERLCKYIYAKDRTDRIRTCAILCHIYHHALHSRWYQARDLMLMSHLQDNIQH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 GEDSAVLMERLCKYIYAKDRTDRIRTCAILCHIYHHALHSRWYQARDLMLMSHLQDNIQH
540 550 560 570 580 590
610 620 630 640 650 660
pF1KB5 ADPPVQILYNRTMVQLGICAFRQGLTKDAHNALLDIQSSGRAKELLGQGLLLRSLQERNQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 ADPPVQILYNRTMVQLGICAFRQGLTKDAHNALLDIQSSGRAKELLGQGLLLRSLQERNQ
600 610 620 630 640 650
670 680 690 700 710 720
pF1KB5 EQEKVERRRQVPFHLHINLELLECVYLVSAMLLEIPYMAAHESDARRRMISKQFHHQLRV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 EQEKVERRRQVPFHLHINLELLECVYLVSAMLLEIPYMAAHESDARRRMISKQFHHQLRV
660 670 680 690 700 710
730 740 750 760 770 780
pF1KB5 GERQPLLGPPESMREHVVAASKAMKMGDWKTCHSFIINEKMNGKVWDLFPEADKVRTMLV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 GERQPLLGPPESMREHVVAASKAMKMGDWKTCHSFIINEKMNGKVWDLFPEADKVRTMLV
720 730 740 750 760 770
790 800 810 820 830 840
pF1KB5 RKIQEESLRTYLFTYSSVYDSISMETLSDMFELDLPTVHSIISKMIINEELMASLDQPTQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 RKIQEESLRTYLFTYSSVYDSISMETLSDMFELDLPTVHSIISKMIINEELMASLDQPTQ
780 790 800 810 820 830
850 860 870 880 890 900
pF1KB5 TVVMHRTEPTAQQNLALQLAEKLGSLVENNERVFDHKQGTYGGYFRDQKDGYRKNEGYMR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 TVVMHRTEPTAQQNLALQLAEKLGSLVENNERVFDHKQGTYGGYFRDQKDGYRKNEGYMR
840 850 860 870 880 890
910
pF1KB5 RGGYRQQQSQTAY
:::::::::::::
CCDS66 RGGYRQQQSQTAY
900
913 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 00:13:00 2016 done: Sat Nov 5 00:13:01 2016
Total Scan time: 4.320 Total Display time: 0.110
Function used was FASTA [36.3.4 Apr, 2011]