FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB5401, 263 aa
  1>>>pF1KB5401 263 - 263 aa - 263 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.8032+/-0.000693; mu= 13.5705+/- 0.042
 mean_var=86.8581+/-16.995, 0's: 0 Z-trim(111.8): 31  B-trim: 0 in 0/50
 Lambda= 0.137616
 statistics sampled from 12630 (12660) to 12630 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.759), E-opt: 0.2 (0.389), width:  16
 Scan time:  2.400

The best scores are:                                      opt bits E(32554)
CCDS13893.1 PIK3IP1 gene_id:113791|Hs108|chr22     ( 263) 1793 365.1 2.7e-101
CCDS46690.1 PIK3IP1 gene_id:113791|Hs108|chr22     ( 173) 1185 244.3 4.2e-65


>>CCDS13893.1 PIK3IP1 gene_id:113791|Hs108|chr22          (263 aa)
 initn: 1793 init1: 1793 opt: 1793  Z-score: 1932.0  bits: 365.1 E(32554): 2.7e-101
Smith-Waterman score: 1793; 99.6% identity (100.0% similar) in 263 aa overlap (1-263:1-263)

               10        20        30        40        50        60
pF1KB5 MLLAWVQAFLVSNMLLAEAYGSGGCFWDNGHLYREDQTSPAPGLRCLNWLDAQSGLASAP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MLLAWVQAFLVSNMLLAEAYGSGGCFWDNGHLYREDQTSPAPGLRCLNWLDAQSGLASAP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 VSGAGNHSYCRNPDEDPRGPWCYVSGEAGVPEKRPCEDLRCPETTSQALPAFTTEIQEAS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 VSGAGNHSYCRNPDEDPRGPWCYVSGEAGVPEKRPCEDLRCPETTSQALPAFTTEIQEAS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB5 EGPGADEVQVFAPANALPARSEAAAVQPVIGISQRVRMNSKEKKDLGTLGYVLGITMMVI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 EGPGADEVQVFAPANALPARSEAAAVQPVIGISQRVRMNSKEKKDLGTLGYVLGITMMVI
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB5 IIAIGAGIILGYSYKRGKDLKEQHDQKVCEREMQRITLPLSAFTNPTCEIVDEKTVVVHT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 IIAIGAGIILGYSYKRGKDLKEQHDQKVCEREMQRITLPLSAFTNPTCEIVDEKTVVVHT
              190       200       210       220       230       240

              250       260   
pF1KB5 SQTPVDPQEGSTPLMGQAGTPGA
       ::::::::::.::::::::::::
CCDS13 SQTPVDPQEGTTPLMGQAGTPGA
              250       260   

>>CCDS46690.1 PIK3IP1 gene_id:113791|Hs108|chr22          (173 aa)
 initn: 1185 init1: 1185 opt: 1185  Z-score: 1282.2  bits: 244.3 E(32554): 4.2e-65
Smith-Waterman score: 1185; 100.0% identity (100.0% similar) in 170 aa overlap (1-170:1-170)

               10        20        30        40        50        60
pF1KB5 MLLAWVQAFLVSNMLLAEAYGSGGCFWDNGHLYREDQTSPAPGLRCLNWLDAQSGLASAP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 MLLAWVQAFLVSNMLLAEAYGSGGCFWDNGHLYREDQTSPAPGLRCLNWLDAQSGLASAP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 VSGAGNHSYCRNPDEDPRGPWCYVSGEAGVPEKRPCEDLRCPETTSQALPAFTTEIQEAS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 VSGAGNHSYCRNPDEDPRGPWCYVSGEAGVPEKRPCEDLRCPETTSQALPAFTTEIQEAS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB5 EGPGADEVQVFAPANALPARSEAAAVQPVIGISQRVRMNSKEKKDLGTLGYVLGITMMVI
       ::::::::::::::::::::::::::::::::::::::::::::::::::          
CCDS46 EGPGADEVQVFAPANALPARSEAAAVQPVIGISQRVRMNSKEKKDLGTLGGRI       
              130       140       150       160       170          

              190       200       210       220       230       240
pF1KB5 IIAIGAGIILGYSYKRGKDLKEQHDQKVCEREMQRITLPLSAFTNPTCEIVDEKTVVVHT




263 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 02:03:15 2016 done: Sat Nov  5 02:03:15 2016
 Total Scan time:  2.400 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]