Result of FASTA (ccds) for
pF1KB5400
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB5400, 471 aa
1>>>pF1KB5400 471 - 471 aa - 471 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 9.3535+/-0.000965; mu= 4.8904+/- 0.059
mean_var=374.7849+/-76.883, 0's: 0 Z-trim(116.0): 26 B-trim: 20 in 1/54
Lambda= 0.066250
statistics sampled from 16602 (16626) to 16602 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.792), E-opt: 0.2 (0.511), width: 16
Scan time: 3.620
The best scores are: opt bits E(32554)
CCDS14410.1 NONO gene_id:4841|Hs108|chrX ( 471) 3200 319.4 5e-87
CCDS55445.1 NONO gene_id:4841|Hs108|chrX ( 382) 2567 258.8 7.1e-69
CCDS41870.1 PSPC1 gene_id:55269|Hs108|chr13 ( 523) 1773 183.1 6.1e-46
CCDS388.1 SFPQ gene_id:6421|Hs108|chr1 ( 707) 1716 177.8 3.2e-44
>>CCDS14410.1 NONO gene_id:4841|Hs108|chrX (471 aa)
initn: 3200 init1: 3200 opt: 3200 Z-score: 1675.9 bits: 319.4 E(32554): 5e-87
Smith-Waterman score: 3200; 100.0% identity (100.0% similar) in 471 aa overlap (1-471:1-471)
10 20 30 40 50 60
pF1KB5 MQSNKTFNLEKQNHTPRKHHQHHHQQQHHQQQQQQPPPPPIPANGQQASSQNEGLTIDLK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 MQSNKTFNLEKQNHTPRKHHQHHHQQQHHQQQQQQPPPPPIPANGQQASSQNEGLTIDLK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 NFRKPGEKTFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDKGFGFIRLETRT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 NFRKPGEKTFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDKGFGFIRLETRT
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB5 LAEIAKVELDNMPLRGKQLRVRFACHSASLTVRNLPQYVSNELLEEAFSVFGQVERAVVI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 LAEIAKVELDNMPLRGKQLRVRFACHSASLTVRNLPQYVSNELLEEAFSVFGQVERAVVI
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB5 VDDRGRPSGKGIVEFSGKPAARKALDRCSEGSFLLTTFPRPVTVEPMDQLDDEEGLPEKL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 VDDRGRPSGKGIVEFSGKPAARKALDRCSEGSFLLTTFPRPVTVEPMDQLDDEEGLPEKL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB5 VIKNQQFHKEREQPPRFAQPGSFEYEYAMRWKALIEMEKQQQDQVDRNIKEAREKLEMEM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 VIKNQQFHKEREQPPRFAQPGSFEYEYAMRWKALIEMEKQQQDQVDRNIKEAREKLEMEM
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB5 EAARHEHQVMLMRQDLMRRQEELRRMEELHNQEVQKRKQLELRQEEERRRREEEMRRQQE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 EAARHEHQVMLMRQDLMRRQEELRRMEELHNQEVQKRKQLELRQEEERRRREEEMRRQQE
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB5 EMMRRQQEGFKGTFPDAREQEIRMGQMAMGGAMGINNRGAMPPAPVPAGTPAPPGPATMM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 EMMRRQQEGFKGTFPDAREQEIRMGQMAMGGAMGINNRGAMPPAPVPAGTPAPPGPATMM
370 380 390 400 410 420
430 440 450 460 470
pF1KB5 PDGTLGLTPPTTERFGQAATMEGIGAIGGTPPAFNRAAPGAEFAPNKRRRY
:::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 PDGTLGLTPPTTERFGQAATMEGIGAIGGTPPAFNRAAPGAEFAPNKRRRY
430 440 450 460 470
>>CCDS55445.1 NONO gene_id:4841|Hs108|chrX (382 aa)
initn: 2567 init1: 2567 opt: 2567 Z-score: 1350.0 bits: 258.8 E(32554): 7.1e-69
Smith-Waterman score: 2567; 100.0% identity (100.0% similar) in 382 aa overlap (90-471:1-382)
60 70 80 90 100 110
pF1KB5 KNFRKPGEKTFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDKGFGFIRLETR
::::::::::::::::::::::::::::::
CCDS55 MRKLFEKYGKAGEVFIHKDKGFGFIRLETR
10 20 30
120 130 140 150 160 170
pF1KB5 TLAEIAKVELDNMPLRGKQLRVRFACHSASLTVRNLPQYVSNELLEEAFSVFGQVERAVV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 TLAEIAKVELDNMPLRGKQLRVRFACHSASLTVRNLPQYVSNELLEEAFSVFGQVERAVV
40 50 60 70 80 90
180 190 200 210 220 230
pF1KB5 IVDDRGRPSGKGIVEFSGKPAARKALDRCSEGSFLLTTFPRPVTVEPMDQLDDEEGLPEK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 IVDDRGRPSGKGIVEFSGKPAARKALDRCSEGSFLLTTFPRPVTVEPMDQLDDEEGLPEK
100 110 120 130 140 150
240 250 260 270 280 290
pF1KB5 LVIKNQQFHKEREQPPRFAQPGSFEYEYAMRWKALIEMEKQQQDQVDRNIKEAREKLEME
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 LVIKNQQFHKEREQPPRFAQPGSFEYEYAMRWKALIEMEKQQQDQVDRNIKEAREKLEME
160 170 180 190 200 210
300 310 320 330 340 350
pF1KB5 MEAARHEHQVMLMRQDLMRRQEELRRMEELHNQEVQKRKQLELRQEEERRRREEEMRRQQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 MEAARHEHQVMLMRQDLMRRQEELRRMEELHNQEVQKRKQLELRQEEERRRREEEMRRQQ
220 230 240 250 260 270
360 370 380 390 400 410
pF1KB5 EEMMRRQQEGFKGTFPDAREQEIRMGQMAMGGAMGINNRGAMPPAPVPAGTPAPPGPATM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 EEMMRRQQEGFKGTFPDAREQEIRMGQMAMGGAMGINNRGAMPPAPVPAGTPAPPGPATM
280 290 300 310 320 330
420 430 440 450 460 470
pF1KB5 MPDGTLGLTPPTTERFGQAATMEGIGAIGGTPPAFNRAAPGAEFAPNKRRRY
::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 MPDGTLGLTPPTTERFGQAATMEGIGAIGGTPPAFNRAAPGAEFAPNKRRRY
340 350 360 370 380
>>CCDS41870.1 PSPC1 gene_id:55269|Hs108|chr13 (523 aa)
initn: 1767 init1: 1594 opt: 1773 Z-score: 938.3 bits: 183.1 E(32554): 6.1e-46
Smith-Waterman score: 1780; 60.0% identity (79.1% similar) in 468 aa overlap (37-460:45-511)
10 20 30 40 50 60
pF1KB5 FNLEKQNHTPRKHHQHHHQQQHHQQQQQQPPPPPIPANGQQASSQNEGLTIDLKNFRKPG
: :: :: .. ... :.:::.:.: :::
CCDS41 NPARLRALESAVGESEPAAAAAMALALAGEPAPPAPAPPEDHPDEEMGFTIDIKSFLKPG
20 30 40 50 60 70
70 80 90 100 110 120
pF1KB5 EKTFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDKGFGFIRLETRTLAEIAK
:::.::: :::::::: :::::....:::.::. .::::..:.::::::::.::::::::
CCDS41 EKTYTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRDRGFGFIRLESRTLAEIAK
80 90 100 110 120 130
130 140 150 160 170 180
pF1KB5 VELDNMPLRGKQLRVRFACHSASLTVRNLPQYVSNELLEEAFSVFGQVERAVVIVDDRGR
.:::. :... ::.::: :.:.:::.:: :::::::.::: :: ::.:::.::::::
CCDS41 AELDGTILKSRPLRIRFATHGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGR
140 150 160 170 180 190
190 200 210 220 230 240
pF1KB5 PSGKGIVEFSGKPAARKALDRCSEGSFLLTTFPRPVTVEPMDQLDDEEGLPEKLVIKNQQ
.:::.:::..:: :::::.::..:.::::: :::: ::::.:.:::.::::::. :.::
CCDS41 ATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVEPMEQFDDEDGLPEKLMQKTQQ
200 210 220 230 240 250
250 260 270 280 290 300
pF1KB5 FHKEREQPPRFAQPGSFEYEYAMRWKALIEMEKQQQDQVDRNIKEAREKLEMEMEAARHE
.::::::::::::::.::.::: ::::: ::::::..::::::.::.:::: ::::::::
CCDS41 YHKEREQPPRFAQPGTFEFEYASRWKALDEMEKQQREQVDRNIREAKEKLEAEMEAARHE
260 270 280 290 300 310
310 320 330 340 350 360
pF1KB5 HQVMLMRQDLMRRQEELRRMEELHNQEVQKRKQLELRQEEERRRREEEM-RRQQEEMMRR
::.::::::::::::::::.:::.:::.:::::..::.:::.::::::: :....: .::
CCDS41 HQLMLMRQDLMRRQEELRRLEELRNQELQKRKQIQLRHEEEHRRREEEMIRHREQEELRR
320 330 340 350 360 370
370 380 390 400
pF1KB5 QQEGFKGTFPDAREQEIRMGQMA------MGGA----------------MGINNRGAMPP
:::::: .. . ::::.:::.:. :: : :..:::...:
CCDS41 QQEGFKPNYMENREQEMRMGDMGPRGAINMGDAFSPAPAGNQGPPPMMGMNMNNRATIPG
380 390 400 410 420 430
410 420 430 440
pF1KB5 APVPAGTPA--PPGPATM----MPDG------TLGLTPPTT------ERFGQA---ATME
:. : :: : : :.: :::. . ::. : :. : :
CCDS41 PPMGPG-PAMGPEGAANMGTPMMPDNGAVHNDRFPQGPPSQMGSPMGSRTGSETPQAPMS
440 450 460 470 480 490
450 460 470
pF1KB5 GIGAIGGTPPAFNRAAPGAEFAPNKRRRY
:.: ..: : .:.:.. :
CCDS41 GVGPVSGGPGGFGRGSQGGNFEGPNKRRRY
500 510 520
>>CCDS388.1 SFPQ gene_id:6421|Hs108|chr1 (707 aa)
initn: 1765 init1: 1622 opt: 1716 Z-score: 907.4 bits: 177.8 E(32554): 3.2e-44
Smith-Waterman score: 1778; 60.0% identity (79.9% similar) in 473 aa overlap (16-471:241-707)
10 20 30 40
pF1KB5 MQSNKTFNLEKQNHTPRKHHQHHHQQQHHQQQQQQPPPPPIPANG
:: .::: .:::..: ::: . .
CCDS38 KMPGGPKPGGGPGLSTPGGHPKPPHRGGGEPRGGRQHH--PPYHQQHHQGPPPGGPGGRS
220 230 240 250 260
50 60 70 80 90 100
pF1KB5 QQASSQNEGLTIDLKNFRKPGEKTFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFI
.. :..::. .:. .:.:::::.::: :::::::: ::::.:...:: :::. :::::
CCDS38 EEKISDSEGFKANLSLLRRPGEKTYTQRCRLFVGNLPADITEDEFKRLFAKYGEPGEVFI
270 280 290 300 310 320
110 120 130 140 150 160
pF1KB5 HKDKGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFACHSASLTVRNLPQYVSNELLE
.: ::::::.::.:.::::::.:::. :.::.::::::: :.:.:.:::: ::::::::
CCDS38 NKGKGFGFIKLESRALAEIAKAELDDTPMRGRQLRVRFATHAAALSVRNLSPYVSNELLE
330 340 350 360 370 380
170 180 190 200 210 220
pF1KB5 EAFSVFGQVERAVVIVDDRGRPSGKGIVEFSGKPAARKALDRCSEGSFLLTTFPRPVTVE
:::: :: .:::::::::::: .:::::::..:::::::..::::: ::::: :::: ::
CCDS38 EAFSQFGPIERAVVIVDDRGRSTGKGIVEFASKPAARKAFERCSEGVFLLTTTPRPVIVE
390 400 410 420 430 440
230 240 250 260 270 280
pF1KB5 PMDQLDDEEGLPEKLVIKNQQFHKEREQPPRFAQPGSFEYEYAMRWKALIEMEKQQQDQV
:..:::::.::::::. :: ...:::: :::::: :.:::::..:::.: ::::::..::
CCDS38 PLEQLDDEDGLPEKLAQKNPMYQKERETPPRFAQHGTFEYEYSQRWKSLDEMEKQQREQV
450 460 470 480 490 500
290 300 310 320 330 340
pF1KB5 DRNIKEAREKLEMEMEAARHEHQVMLMRQDLMRRQEELRRMEELHNQEVQKRKQLELRQE
..:.:.:..::: ::: : ::::. :.:::::::::::::::::::::.::::...::::
CCDS38 EKNMKDAKDKLESEMEDAYHEHQANLLRQDLMRRQEELRRMEELHNQEMQKRKEMQLRQE
510 520 530 540 550 560
350 360 370 380 390
pF1KB5 EERRRREEEM---RRQQEEMMRRQ-QEGF-KGTFPDAREQEIRMG---QMAMGGAMGINN
:::::::::: .:..::.:::: .:.. . . : ::...::: : :: .: ..
CCDS38 EERRRREEEMMIRQREMEEQMRRQREESYSRMGYMDPRERDMRMGGGGAMNMGDPYGSGG
570 580 590 600 610 620
400 410 420 430 440
pF1KB5 RGAMPPAPVPAGT--PAPPG--PATMMPDGTLGLTPPTTERFGQ--AATMEGIGAIG---
. .:: .: : :: :::: .:.. . :::::: :. . : : :
CCDS38 Q-KFPPLGGGGGIGYEANPGVPPATM--SGSMMGSDMRTERFGQGGAGPVGGQGPRGMGP
630 640 650 660 670 680
450 460 470
pF1KB5 GTPPAFNRAAPGAEFAPNKRRRY
::: ...:. : .:::. :.
CCDS38 GTPAGYGRGREEYE-GPNKKPRF
690 700
471 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 03:42:57 2016 done: Fri Nov 4 03:42:58 2016
Total Scan time: 3.620 Total Display time: 0.020
Function used was FASTA [36.3.4 Apr, 2011]