Result of FASTA (ccds) for
pF1KB5398
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB5398, 181 aa
1>>>pF1KB5398 181 - 181 aa - 181 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.1923+/-0.00101; mu= 13.5174+/- 0.061
mean_var=87.3514+/-18.900, 0's: 0 Z-trim(105.1): 165 B-trim: 287 in 1/48
Lambda= 0.137227
statistics sampled from 8046 (8249) to 8046 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.626), E-opt: 0.2 (0.253), width: 16
Scan time: 1.830
The best scores are: opt bits E(32554)
CCDS1565.1 ARF1 gene_id:375|Hs108|chr1 ( 181) 1194 246.2 8.3e-66
CCDS8774.1 ARF3 gene_id:377|Hs108|chr12 ( 181) 1153 238.1 2.3e-63
CCDS2884.1 ARF4 gene_id:378|Hs108|chr3 ( 180) 975 202.8 9.4e-53
CCDS34745.1 ARF5 gene_id:381|Hs108|chr7 ( 180) 972 202.2 1.4e-52
CCDS9695.1 ARF6 gene_id:382|Hs108|chr14 ( 175) 856 179.2 1.1e-45
CCDS44958.1 ARL1 gene_id:400|Hs108|chr12 ( 181) 723 152.9 9.8e-38
CCDS3987.1 TRIM23 gene_id:373|Hs108|chr5 ( 574) 699 148.7 6e-36
CCDS7131.1 ARL5B gene_id:221079|Hs108|chr10 ( 179) 611 130.8 4.6e-31
CCDS2195.1 ARL5A gene_id:26225|Hs108|chr2 ( 179) 607 130.0 8e-31
CCDS43322.1 TRIM23 gene_id:373|Hs108|chr5 ( 569) 611 131.2 1e-30
CCDS3986.1 TRIM23 gene_id:373|Hs108|chr5 ( 546) 582 125.5 5.4e-29
CCDS8088.1 ARL2 gene_id:402|Hs108|chr11 ( 184) 553 119.3 1.3e-27
CCDS3192.1 ARL14 gene_id:80117|Hs108|chr3 ( 192) 545 117.7 4.1e-27
CCDS7538.1 ARL3 gene_id:403|Hs108|chr10 ( 182) 536 115.9 1.4e-26
CCDS2512.1 ARL4C gene_id:10123|Hs108|chr2 ( 192) 523 113.4 8.5e-26
CCDS63169.1 ARL4C gene_id:10123|Hs108|chr2 ( 201) 523 113.4 8.8e-26
CCDS73510.1 ARL1 gene_id:400|Hs108|chr12 ( 135) 500 108.7 1.6e-24
CCDS5359.1 ARL4A gene_id:10124|Hs108|chr7 ( 200) 498 108.4 2.7e-24
CCDS45664.1 ARL5C gene_id:390790|Hs108|chr17 ( 179) 496 108.0 3.3e-24
CCDS46425.1 ARL5A gene_id:26225|Hs108|chr2 ( 142) 486 105.9 1.1e-23
CCDS11463.1 ARL4D gene_id:379|Hs108|chr17 ( 201) 470 102.9 1.3e-22
CCDS2928.1 ARL6 gene_id:84100|Hs108|chr3 ( 186) 468 102.5 1.6e-22
CCDS9419.1 ARL11 gene_id:115761|Hs108|chr13 ( 196) 442 97.3 5.8e-21
CCDS74086.1 ARL17A gene_id:51326|Hs108|chr17 ( 88) 435 95.6 8.6e-21
CCDS74087.1 ARL17A gene_id:51326|Hs108|chr17 ( 141) 435 95.8 1.2e-20
CCDS58557.1 ARL17B gene_id:100506084|Hs108|chr17 ( 177) 435 95.9 1.4e-20
CCDS45718.1 ARL17A gene_id:51326|Hs108|chr17 ( 177) 435 95.9 1.4e-20
CCDS45717.1 ARL17A gene_id:51326|Hs108|chr17 ( 125) 429 94.6 2.5e-20
CCDS54137.1 ARL17B gene_id:100506084|Hs108|chr17 ( 125) 429 94.6 2.5e-20
CCDS82144.1 ARL17B gene_id:100506084|Hs108|chr17 ( 95) 427 94.1 2.7e-20
CCDS82146.1 ARL17A gene_id:51326|Hs108|chr17 ( 95) 427 94.1 2.7e-20
CCDS2566.1 ARL8B gene_id:55207|Hs108|chr3 ( 186) 402 89.4 1.4e-18
CCDS1421.1 ARL8A gene_id:127829|Hs108|chr1 ( 186) 391 87.2 6.1e-18
CCDS55770.1 ARL2 gene_id:402|Hs108|chr11 ( 157) 366 82.2 1.7e-16
CCDS13533.1 ARFRP1 gene_id:10139|Hs108|chr20 ( 201) 367 82.5 1.7e-16
CCDS46630.1 ARFRP1 gene_id:10139|Hs108|chr20 ( 173) 324 73.9 5.7e-14
CCDS2925.1 ARL13B gene_id:200894|Hs108|chr3 ( 428) 321 73.7 1.6e-13
CCDS54850.1 ARL15 gene_id:54622|Hs108|chr5 ( 204) 315 72.2 2.2e-13
CCDS4177.1 SAR1B gene_id:51128|Hs108|chr5 ( 198) 311 71.4 3.7e-13
CCDS7298.1 SAR1A gene_id:56681|Hs108|chr10 ( 198) 295 68.2 3.4e-12
CCDS73004.1 ARL8A gene_id:127829|Hs108|chr1 ( 147) 293 67.7 3.6e-12
CCDS4400.1 ARL10 gene_id:285598|Hs108|chr5 ( 244) 295 68.3 3.9e-12
CCDS68172.1 ARFRP1 gene_id:10139|Hs108|chr20 ( 154) 292 67.5 4.2e-12
>>CCDS1565.1 ARF1 gene_id:375|Hs108|chr1 (181 aa)
initn: 1194 init1: 1194 opt: 1194 Z-score: 1294.9 bits: 246.2 E(32554): 8.3e-66
Smith-Waterman score: 1194; 100.0% identity (100.0% similar) in 181 aa overlap (1-181:1-181)
10 20 30 40 50 60
pF1KB5 MGNIFANLFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS15 MGNIFANLFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS15 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB5 LLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS15 LLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQ
130 140 150 160 170 180
pF1KB5 K
:
CCDS15 K
>>CCDS8774.1 ARF3 gene_id:377|Hs108|chr12 (181 aa)
initn: 1153 init1: 1153 opt: 1153 Z-score: 1251.0 bits: 238.1 E(32554): 2.3e-63
Smith-Waterman score: 1153; 96.1% identity (100.0% similar) in 181 aa overlap (1-181:1-181)
10 20 30 40 50 60
pF1KB5 MGNIFANLFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
:::::.::.:.:.:::::::::::::::::::::::::::::::::::::::::::::::
CCDS87 MGNIFGNLLKSLIGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS87 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB5 LLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQ
:::::::::::::::::::::::::::::::::::::::::::::::::::::.:::.:.
CCDS87 LLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLANQLKNK
130 140 150 160 170 180
pF1KB5 K
:
CCDS87 K
>>CCDS2884.1 ARF4 gene_id:378|Hs108|chr3 (180 aa)
initn: 975 init1: 975 opt: 975 Z-score: 1060.6 bits: 202.8 E(32554): 9.4e-53
Smith-Waterman score: 975; 81.9% identity (94.4% similar) in 177 aa overlap (1-177:1-177)
10 20 30 40 50 60
pF1KB5 MGNIFANLFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
:: ...::. :::::.:::::::::::::::::::::::::::::::::::::::::::
CCDS28 MGLTISSLFSRLFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAV
: ::::::::::.:::::.::::::::::::::::::::..:. .::..:: :::::::
CCDS28 ICFTVWDVGGQDRIRPLWKHYFQNTQGLIFVVDSNDRERIQEVADELQKMLLVDELRDAV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB5 LLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQ
::.::::::::::: .:.::::::.:::.:.::.::::::.: :::::::::::.:
CCDS28 LLLFANKQDLPNAMAISEMTDKLGLQSLRNRTWYVQATCATQGTGLYEGLDWLSNELSKR
130 140 150 160 170 180
pF1KB5 K
>>CCDS34745.1 ARF5 gene_id:381|Hs108|chr7 (180 aa)
initn: 972 init1: 972 opt: 972 Z-score: 1057.4 bits: 202.2 E(32554): 1.4e-52
Smith-Waterman score: 972; 81.9% identity (93.2% similar) in 177 aa overlap (1-177:1-177)
10 20 30 40 50 60
pF1KB5 MGNIFANLFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
:: . ::. .::::.:::::::::::::::::::::::::::::::::::::::::::
CCDS34 MGLTVSALFSRIFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAV
: ::::::::::::::::::::::::::::::::::::::.:. .::..:: ::::::::
CCDS34 ICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB5 LLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQ
:::::::::.:::: ..:.::::::. :: :.::.::::::.: :::.::::::..:
CCDS34 LLVFANKQDMPNAMPVSELTDKLGLQHLRSRTWYVQATCATQGTGLYDGLDWLSHELSKR
130 140 150 160 170 180
pF1KB5 K
>>CCDS9695.1 ARF6 gene_id:382|Hs108|chr14 (175 aa)
initn: 876 init1: 851 opt: 856 Z-score: 933.4 bits: 179.2 E(32554): 1.1e-45
Smith-Waterman score: 856; 67.6% identity (88.3% similar) in 179 aa overlap (1-179:1-175)
10 20 30 40 50 60
pF1KB5 MGNIFANLFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
::..... .::.:::::::.:::::::::::::::::. ::::::.::::::: :::
CCDS96 MGKVLSK----IFGNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKN
10 20 30 40 50
70 80 90 100 110 120
pF1KB5 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAV
..:.:::::::::::::::::. .::::::::: ::.:..:::.:: :.. . :.:::.
CCDS96 VKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAI
60 70 80 90 100 110
130 140 150 160 170 180
pF1KB5 LLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQ
.:.::::::::.::. :: .:::: .: ::::.: .:::::::::::: ::... ..
CCDS96 ILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSNYKS
120 130 140 150 160 170
pF1KB5 K
>>CCDS44958.1 ARL1 gene_id:400|Hs108|chr12 (181 aa)
initn: 738 init1: 723 opt: 723 Z-score: 790.9 bits: 152.9 E(32554): 9.8e-38
Smith-Waterman score: 723; 56.9% identity (87.3% similar) in 181 aa overlap (1-181:1-181)
10 20 30 40 50 60
pF1KB5 MGNIFANLFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
::..:...:..::: .:::::..:::.::::::::.:..::.:::::::::::::: :::
CCDS44 MGGFFSSIFSSLFGTREMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAV
..: :::.::: .::: :: :..::...:.:::: ::.:.. .. ::. :: :.::: :.
CCDS44 LKFQVWDLGGQTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAI
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB5 LLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQ
:.:::::::. .::...:....::: .:. :.: : : ::.: :: :...:: . :...
CCDS44 LVVFANKQDMEQAMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETLKSR
130 140 150 160 170 180
pF1KB5 K
.
CCDS44 Q
>>CCDS3987.1 TRIM23 gene_id:373|Hs108|chr5 (574 aa)
initn: 698 init1: 558 opt: 699 Z-score: 758.8 bits: 148.7 E(32554): 6e-36
Smith-Waterman score: 699; 62.8% identity (86.0% similar) in 164 aa overlap (15-177:402-565)
10 20 30 40
pF1KB5 MGNIFANLFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVT
: :.:.. .:::.:::::::.::: :..
CCDS39 QQFTEVADHIQLDASIPVTFTKDNRVHIGPKMEIRVVTLGLDGAGKTTILFKLKQDEFMQ
380 390 400 410 420 430
50 60 70 80 90 100
pF1KB5 TIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAR
:::::::::::::::..::.:::::. :.::::.::. :::...:::::. :.:..::.
CCDS39 PIPTIGFNVETVEYKNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVDSSHRDRISEAH
440 450 460 470 480 490
110 120 130 140 150 160
pF1KB5 EELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLR-HRNWYIQATCATSG
:: ..:.: :::::.::.::::::. .:... :::. :.::.: :.::::. : ::
CCDS39 SELAKLLTEKELRDALLLIFANKQDVAGALSVEEITELLSLHKLCCGRSWYIQGCDARSG
500 510 520 530 540 550
170 180
pF1KB5 DGLYEGLDWLSNQLRNQK
:::::::::: ::
CCDS39 MGLYEGLDWLSRQLVAAGVLDVA
560 570
>>CCDS7131.1 ARL5B gene_id:221079|Hs108|chr10 (179 aa)
initn: 609 init1: 588 opt: 611 Z-score: 671.2 bits: 130.8 E(32554): 4.6e-31
Smith-Waterman score: 611; 50.3% identity (80.2% similar) in 177 aa overlap (1-177:1-176)
10 20 30 40 50 60
pF1KB5 MGNIFANLFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
:: :::.:.. :: ..: ....:::: ::::::::.. ..:.: : :::: ::: . ::
CCDS71 MGLIFAKLWS-LFCNQEHKVIIVGLDNAGKTTILYQFLMNEVVHTSPTIGSNVEEIVVKN
10 20 30 40 50
70 80 90 100 110 120
pF1KB5 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAV
: .::.:::...: : :..::. .:.:::: ::::. ..:::.::::...:: :.
CCDS71 THFLMWDIGGQESLRSSWNTYYSNTEFIILVVDSIDRERLAITKEELYRMLAHEDLRKAA
60 70 80 90 100 110
130 140 150 160 170 180
pF1KB5 LLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQ
.:.::::::. . :.::::. : : :.. . :.::. :: .:.:: .::.:.....
CCDS71 VLIFANKQDMKGCMTAAEISKYLTLSSIKDHPWHIQSCCALTGEGLCQGLEWMTSRIGVR
120 130 140 150 160 170
pF1KB5 K
>>CCDS2195.1 ARL5A gene_id:26225|Hs108|chr2 (179 aa)
initn: 592 init1: 592 opt: 607 Z-score: 666.9 bits: 130.0 E(32554): 8e-31
Smith-Waterman score: 607; 48.9% identity (80.9% similar) in 178 aa overlap (1-178:1-177)
10 20 30 40 50 60
pF1KB5 MGNIFANLFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
:: .:. ... ::...: ....:::: ::::::::.....:.: : :::: ::: . .:
CCDS21 MGILFTRIWR-LFNHQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINN
10 20 30 40 50
70 80 90 100 110 120
pF1KB5 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAV
: .::.:::...: : :. ::. .: ::::.::::.. .::::..:::...:: :
CCDS21 TRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAG
60 70 80 90 100 110
130 140 150 160 170 180
pF1KB5 LLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQ
::.::::::. . :..:::.. : : :.. ..:.::: :: .:.:: .::.:. ..:.
CCDS21 LLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRLKIR
120 130 140 150 160 170
pF1KB5 K
>>CCDS43322.1 TRIM23 gene_id:373|Hs108|chr5 (569 aa)
initn: 606 init1: 558 opt: 611 Z-score: 664.7 bits: 131.2 E(32554): 1e-30
Smith-Waterman score: 611; 60.4% identity (85.9% similar) in 149 aa overlap (15-162:402-550)
10 20 30 40
pF1KB5 MGNIFANLFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVT
: :.:.. .:::.:::::::.::: :..
CCDS43 QQFTEVADHIQLDASIPVTFTKDNRVHIGPKMEIRVVTLGLDGAGKTTILFKLKQDEFMQ
380 390 400 410 420 430
50 60 70 80 90 100
pF1KB5 TIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAR
:::::::::::::::..::.:::::. :.::::.::. :::...:::::. :.:..::.
CCDS43 PIPTIGFNVETVEYKNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVDSSHRDRISEAH
440 450 460 470 480 490
110 120 130 140 150 160
pF1KB5 EELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLR-HRNWYIQATCATSG
:: ..:.: :::::.::.::::::. .:... :::. :.::.: :.::::. : :
CCDS43 SELAKLLTEKELRDALLLIFANKQDVAGALSVEEITELLSLHKLCCGRSWYIQGCDARSV
500 510 520 530 540 550
170 180
pF1KB5 DGLYEGLDWLSNQLRNQK
CCDS43 FQIICDQYTGKEVVTEKG
560
181 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 17:18:46 2016 done: Thu Nov 3 17:18:46 2016
Total Scan time: 1.830 Total Display time: -0.030
Function used was FASTA [36.3.4 Apr, 2011]