FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB5397, 309 aa
  1>>>pF1KB5397 309 - 309 aa - 309 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.3519+/-0.000754; mu= 15.1182+/- 0.046
 mean_var=59.2995+/-11.698, 0's: 0 Z-trim(107.8): 16  B-trim: 0 in 0/51
 Lambda= 0.166552
 statistics sampled from 9785 (9793) to 9785 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.686), E-opt: 0.2 (0.301), width:  16
 Scan time:  2.070

The best scores are:                                      opt bits E(32554)
CCDS11817.1 FN3KRP gene_id:79672|Hs108|chr17       ( 309) 2112 515.6 1.9e-146
CCDS11818.1 FN3K gene_id:64122|Hs108|chr17         ( 309) 1409 346.7 1.4e-95


>>CCDS11817.1 FN3KRP gene_id:79672|Hs108|chr17            (309 aa)
 initn: 2112 init1: 2112 opt: 2112  Z-score: 2742.5  bits: 515.6 E(32554): 1.9e-146
Smith-Waterman score: 2112; 100.0% identity (100.0% similar) in 309 aa overlap (1-309:1-309)

               10        20        30        40        50        60
pF1KB5 MEELLRRELGCSSVRATGHSGGGCISQGRSYDTDQGRVFVKVNPKAEARRMFEGEMASLT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MEELLRRELGCSSVRATGHSGGGCISQGRSYDTDQGRVFVKVNPKAEARRMFEGEMASLT
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 AILKTNTVKVPKPIKVLDAPGGGSVLVMEHMDMRHLSSHAAKLGAQLADLHLDNKKLGEM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 AILKTNTVKVPKPIKVLDAPGGGSVLVMEHMDMRHLSSHAAKLGAQLADLHLDNKKLGEM
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB5 RLKEAGTVGRGGGQEERPFVARFGFDVVTCCGYLPQVNDWQEDWVVFYARQRIQPQMDMV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 RLKEAGTVGRGGGQEERPFVARFGFDVVTCCGYLPQVNDWQEDWVVFYARQRIQPQMDMV
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB5 EKESGDREALQLWSALQLKIPDLFRDLEIIPALLHGDLWGGNVAEDSSGPVIFDPASFYG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 EKESGDREALQLWSALQLKIPDLFRDLEIIPALLHGDLWGGNVAEDSSGPVIFDPASFYG
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB5 HSEYELAIAGMFGGFSSSFYSAYHGKIPKAPGFEKRLQLYQLFHYLNHWNHFGSGYRGSS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 HSEYELAIAGMFGGFSSSFYSAYHGKIPKAPGFEKRLQLYQLFHYLNHWNHFGSGYRGSS
              250       260       270       280       290       300

                
pF1KB5 LNIMRNLVK
       :::::::::
CCDS11 LNIMRNLVK
                

>>CCDS11818.1 FN3K gene_id:64122|Hs108|chr17              (309 aa)
 initn: 1451 init1: 1409 opt: 1409  Z-score: 1829.6  bits: 346.7 E(32554): 1.4e-95
Smith-Waterman score: 1409; 64.4% identity (84.5% similar) in 309 aa overlap (1-309:1-309)

               10        20        30        40        50        60
pF1KB5 MEELLRRELGCSSVRATGHSGGGCISQGRSYDTDQGRVFVKVNPKAEARRMFEGEMASLT
       ::.::: ::  ...:: :  :.::::.::.:::: : :::::: ...::.:::::.::: 
CCDS11 MEQLLRAELRTATLRAFGGPGAGCISEGRAYDTDAGPVFVKVNRRTQARQMFEGEVASLE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 AILKTNTVKVPKPIKVLDAPGGGSVLVMEHMDMRHLSSHAAKLGAQLADLHLDNKKLGEM
       :. .:. :.::.:.::.: ::::...::::. :. :::.:.::: :.::::: :.:: : 
CCDS11 ALRSTGLVRVPRPMKVIDLPGGGAAFVMEHLKMKSLSSQASKLGEQMADLHLYNQKLREK
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB5 RLKEAGTVGRGGGQEERPFVARFGFDVVTCCGYLPQVNDWQEDWVVFYARQRIQPQMDMV
         .: .:::: :   :  .: .::: .:::::..::::.::.:: .:.::.:.: :.:..
CCDS11 LKEEENTVGRRGEGAEPQYVDKFGFHTVTCCGFIPQVNEWQDDWPTFFARHRLQAQLDLI
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB5 EKESGDREALQLWSALQLKIPDLFRDLEIIPALLHGDLWGGNVAEDSSGPVIFDPASFYG
       ::. .:::: .::: ::.::::::  :::.:::::::::.::::::. ::.:.:::::::
CCDS11 EKDYADREARELWSRLQVKIPDLFCGLEIVPALLHGDLWSGNVAEDDVGPIIYDPASFYG
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB5 HSEYELAIAGMFGGFSSSFYSAYHGKIPKAPGFEKRLQLYQLFHYLNHWNHFGSGYRGSS
       :::.::::: :::::  ::..::: ::::::::..:: :::::.:::::::::  ::. :
CCDS11 HSEFELAIALMFGGFPRSFFTAYHRKIPKAPGFDQRLLLYQLFNYLNHWNHFGREYRSPS
              250       260       270       280       290       300

                
pF1KB5 LNIMRNLVK
       :. :: :.:
CCDS11 LGTMRRLLK
                




309 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 22:31:11 2016 done: Thu Nov  3 22:31:11 2016
 Total Scan time:  2.070 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]