Result of FASTA (ccds) for
pF1KB5384
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB5384, 206 aa
1>>>pF1KB5384 206 - 206 aa - 206 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.3584+/-0.000927; mu= 9.5165+/- 0.055
mean_var=96.3127+/-18.757, 0's: 0 Z-trim(107.4): 35 B-trim: 80 in 2/50
Lambda= 0.130687
statistics sampled from 9560 (9585) to 9560 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.661), E-opt: 0.2 (0.294), width: 16
Scan time: 1.920
The best scores are: opt bits E(32554)
CCDS13110.1 SNAP25 gene_id:6616|Hs108|chr20 ( 206) 1345 263.4 7.2e-71
CCDS13109.1 SNAP25 gene_id:6616|Hs108|chr20 ( 206) 1292 253.4 7.3e-68
CCDS10087.1 SNAP23 gene_id:8773|Hs108|chr15 ( 211) 488 101.8 3.2e-22
CCDS10088.1 SNAP23 gene_id:8773|Hs108|chr15 ( 158) 428 90.4 6.4e-19
>>CCDS13110.1 SNAP25 gene_id:6616|Hs108|chr20 (206 aa)
initn: 1345 init1: 1345 opt: 1345 Z-score: 1385.8 bits: 263.4 E(32554): 7.2e-71
Smith-Waterman score: 1345; 100.0% identity (100.0% similar) in 206 aa overlap (1-206:1-206)
10 20 30 40 50 60
pF1KB5 MAEDADMRNELEEMQRRADQLADESLESTRRMLQLVEESKDAGIRTLVMLDEQGEQLERI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MAEDADMRNELEEMQRRADQLADESLESTRRMLQLVEESKDAGIRTLVMLDEQGEQLERI
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 EEGMDQINKDMKEAEKNLTDLGKFCGLCVCPCNKLKSSDAYKKAWGNNQDGVVASQPARV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 EEGMDQINKDMKEAEKNLTDLGKFCGLCVCPCNKLKSSDAYKKAWGNNQDGVVASQPARV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB5 VDEREQMAISGGFIRRVTNDARENEMDENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 VDEREQMAISGGFIRRVTNDARENEMDENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDR
130 140 150 160 170 180
190 200
pF1KB5 IMEKADSNKTRIDEANQRATKMLGSG
::::::::::::::::::::::::::
CCDS13 IMEKADSNKTRIDEANQRATKMLGSG
190 200
>>CCDS13109.1 SNAP25 gene_id:6616|Hs108|chr20 (206 aa)
initn: 1292 init1: 1292 opt: 1292 Z-score: 1331.8 bits: 253.4 E(32554): 7.3e-68
Smith-Waterman score: 1292; 95.6% identity (98.5% similar) in 206 aa overlap (1-206:1-206)
10 20 30 40 50 60
pF1KB5 MAEDADMRNELEEMQRRADQLADESLESTRRMLQLVEESKDAGIRTLVMLDEQGEQLERI
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::.:.
CCDS13 MAEDADMRNELEEMQRRADQLADESLESTRRMLQLVEESKDAGIRTLVMLDEQGEQLDRV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 EEGMDQINKDMKEAEKNLTDLGKFCGLCVCPCNKLKSSDAYKKAWGNNQDGVVASQPARV
::::..::.::::::::: :::: ::: .:::::::::::::::::::::::::::::::
CCDS13 EEGMNHINQDMKEAEKNLKDLGKCCGLFICPCNKLKSSDAYKKAWGNNQDGVVASQPARV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB5 VDEREQMAISGGFIRRVTNDARENEMDENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 VDEREQMAISGGFIRRVTNDARENEMDENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDR
130 140 150 160 170 180
190 200
pF1KB5 IMEKADSNKTRIDEANQRATKMLGSG
::::::::::::::::::::::::::
CCDS13 IMEKADSNKTRIDEANQRATKMLGSG
190 200
>>CCDS10087.1 SNAP23 gene_id:8773|Hs108|chr15 (211 aa)
initn: 760 init1: 426 opt: 488 Z-score: 512.4 bits: 101.8 E(32554): 3.2e-22
Smith-Waterman score: 784; 60.5% identity (82.9% similar) in 205 aa overlap (12-205:7-211)
10 20 30 40 50 60
pF1KB5 MAEDADMRNELEEMQRRADQLADESLESTRRMLQLVEESKDAGIRTLVMLDEQGEQLERI
::.:.:: :..:::::::::.: :. ::.::::.:..::::: :::.::
CCDS10 MDNLSSEEIQQRAHQITDESLESTRRILGLAIESQDAGIKTITMLDEQKEQLNRI
10 20 30 40 50
70 80 90 100 110
pF1KB5 EEGMDQINKDMKEAEKNLTDLGKFCGLCVCPCNKLK---SSDAYKKAWG----NNQDGVV
:::.:::::::.:.::.::.:.: :::::::::. : :. ::: .:: :. .::
CCDS10 EEGLDQINKDMRETEKTLTELNKCCGLCVCPCNRTKNFESGKAYKTTWGDGGENSPCNVV
60 70 80 90 100 110
120 130 140 150 160
pF1KB5 ASQPARVVDEREQM----AISGGFIRRVTNDARENEMDENLEQVSGIIGNLRHMALDMGN
..::. :.. . :. : :::.:.:.::::::.::.::: ::..:.:::. :::..::
CCDS10 SKQPGPVTNGQLQQPTTGAASGGYIKRITNDAREDEMEENLTQVGSILGNLKDMALNIGN
120 130 140 150 160 170
170 180 190 200
pF1KB5 EIDTQNRQIDRIMEKADSNKTRIDEANQRATKMLGSG
:::.:: :: :: .:::.:. ::: :: :: :.. :
CCDS10 EIDAQNPQIKRITDKADTNRDRIDIANARAKKLIDS
180 190 200 210
>>CCDS10088.1 SNAP23 gene_id:8773|Hs108|chr15 (158 aa)
initn: 759 init1: 414 opt: 428 Z-score: 453.2 bits: 90.4 E(32554): 6.4e-19
Smith-Waterman score: 608; 53.6% identity (70.6% similar) in 194 aa overlap (12-205:7-158)
10 20 30 40 50 60
pF1KB5 MAEDADMRNELEEMQRRADQLADESLESTRRMLQLVEESKDAGIRTLVMLDEQGEQLERI
::.:.:: :..:::::::::.: :. ::.::::.:..::::: :::.::
CCDS10 MDNLSSEEIQQRAHQITDESLESTRRILGLAIESQDAGIKTITMLDEQKEQLNRI
10 20 30 40 50
70 80 90 100 110 120
pF1KB5 EEGMDQINKDMKEAEKNLTDLGKFCGLCVCPCNKLKSSDAYKKAWGNNQDGVVASQPARV
:::.:::::::.:.::.::.:.: :::::::::.
CCDS10 EEGLDQINKDMRETEKTLTELNKCCGLCVCPCNS--------------------------
60 70 80
130 140 150 160 170 180
pF1KB5 VDEREQMAISGGFIRRVTNDARENEMDENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDR
.::::::.::.::: ::..:.:::. :::..:::::.:: :: :
CCDS10 ----------------ITNDAREDEMEENLTQVGSILGNLKDMALNIGNEIDAQNPQIKR
90 100 110 120 130
190 200
pF1KB5 IMEKADSNKTRIDEANQRATKMLGSG
: .:::.:. ::: :: :: :.. :
CCDS10 ITDKADTNRDRIDIANARAKKLIDS
140 150
206 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 03:42:20 2016 done: Fri Nov 4 03:42:20 2016
Total Scan time: 1.920 Total Display time: -0.020
Function used was FASTA [36.3.4 Apr, 2011]