Result of FASTA (ccds) for
pF1KB5370
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB5370, 305 aa
1>>>pF1KB5370 305 - 305 aa - 305 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.2540+/-0.000706; mu= 16.3444+/- 0.043
mean_var=69.8434+/-14.216, 0's: 0 Z-trim(110.3): 13 B-trim: 605 in 1/51
Lambda= 0.153466
statistics sampled from 11487 (11499) to 11487 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.735), E-opt: 0.2 (0.353), width: 16
Scan time: 2.750
The best scores are: opt bits E(32554)
CCDS1431.1 CYB5R1 gene_id:51706|Hs108|chr1 ( 305) 2055 463.6 8.7e-131
CCDS14040.1 CYB5R3 gene_id:1727|Hs108|chr22 ( 278) 1272 290.2 1.2e-78
CCDS33658.1 CYB5R3 gene_id:1727|Hs108|chr22 ( 301) 1272 290.2 1.3e-78
CCDS54535.1 CYB5R3 gene_id:1727|Hs108|chr22 ( 334) 1272 290.2 1.4e-78
CCDS7780.1 CYB5R2 gene_id:51700|Hs108|chr11 ( 276) 1179 269.6 1.9e-72
>>CCDS1431.1 CYB5R1 gene_id:51706|Hs108|chr1 (305 aa)
initn: 2055 init1: 2055 opt: 2055 Z-score: 2461.5 bits: 463.6 E(32554): 8.7e-131
Smith-Waterman score: 2055; 100.0% identity (100.0% similar) in 305 aa overlap (1-305:1-305)
10 20 30 40 50 60
pF1KB5 MGIQTSPVLLASLGVGLVTLLGLAVGSYLVRRSRRPQVTLLDPNEKYLLRLLDKTTVSHN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 MGIQTSPVLLASLGVGLVTLLGLAVGSYLVRRSRRPQVTLLDPNEKYLLRLLDKTTVSHN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 TKRFRFALPTAHHTLGLPVGKHIYLSTRIDGSLVIRPYTPVTSDEDQGYVDLVIKVYLKG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 TKRFRFALPTAHHTLGLPVGKHIYLSTRIDGSLVIRPYTPVTSDEDQGYVDLVIKVYLKG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB5 VHPKFPEGGKMSQYLDSLKVGDVVEFRGPSGLLTYTGKGHFNIQPNKKSPPEPRVAKKLG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 VHPKFPEGGKMSQYLDSLKVGDVVEFRGPSGLLTYTGKGHFNIQPNKKSPPEPRVAKKLG
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB5 MIAGGTGITPMLQLIRAILKVPEDPTQCFLLFANQTEKDIILREDLEELQARYPNRFKLW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 MIAGGTGITPMLQLIRAILKVPEDPTQCFLLFANQTEKDIILREDLEELQARYPNRFKLW
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB5 FTLDHPPKDWAYSKGFVTADMIREHLPAPGDDVLVLLCGPPPMVQLACHPNLDKLGYSQK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 FTLDHPPKDWAYSKGFVTADMIREHLPAPGDDVLVLLCGPPPMVQLACHPNLDKLGYSQK
250 260 270 280 290 300
pF1KB5 MRFTY
:::::
CCDS14 MRFTY
>>CCDS14040.1 CYB5R3 gene_id:1727|Hs108|chr22 (278 aa)
initn: 1296 init1: 1250 opt: 1272 Z-score: 1525.2 bits: 290.2 E(32554): 1.2e-78
Smith-Waterman score: 1272; 63.5% identity (85.9% similar) in 277 aa overlap (29-305:3-278)
10 20 30 40 50 60
pF1KB5 MGIQTSPVLLASLGVGLVTLLGLAVGSYLVRRSRRPQVTLLDPNEKYLLRLLDKTTVSHN
: .:: : .:: .:. :: :::.:. .::.
CCDS14 MKLFQRST-PAITLESPDIKYPLRLIDREIISHD
10 20 30
70 80 90 100 110 120
pF1KB5 TKRFRFALPTAHHTLGLPVGKHIYLSTRIDGSLVIRPYTPVTSDEDQGYVDLVIKVYLKG
:.:::::::. .: ::::::.:::::.::::.::.:::::..::.:.:.::::::::.:
CCDS14 TRRFRFALPSPQHILGLPVGQHIYLSARIDGNLVVRPYTPISSDDDKGFVDLVIKVYFKD
40 50 60 70 80 90
130 140 150 160 170 180
pF1KB5 VHPKFPEGGKMSQYLDSLKVGDVVEFRGPSGLLTYTGKGHFNIQPNKKSPPEPRVAKKLG
.::::: ::::::::.:...::..:::::::::.: :::.: :.:.::: : :..:..:
CCDS14 THPKFPAGGKMSQYLESMQIGDTIEFRGPSGLLVYQGKGKFAIRPDKKSNPIIRTVKSVG
100 110 120 130 140 150
190 200 210 220 230 240
pF1KB5 MIAGGTGITPMLQLIRAILKVPEDPTQCFLLFANQTEKDIILREDLEELQARYPNRFKLW
:::::::::::::.::::.: :.: : : :::::::::::.:: .::::. .. :::::
CCDS14 MIAGGTGITPMLQVIRAIMKDPDDHTVCHLLFANQTEKDILLRPELEELRNKHSARFKLW
160 170 180 190 200 210
250 260 270 280 290 300
pF1KB5 FTLDHPPKDWAYSKGFVTADMIREHLPAPGDDVLVLLCGPPPMVQLACHPNLDKLGYSQK
.:::. :. : :..:::. .:::.::: : .. :::.::::::.: :: ::::..:. .
CCDS14 YTLDRAPEAWDYGQGFVNEEMIRDHLPPPEEEPLVLMCGPPPMIQYACLPNLDHVGHPTE
220 230 240 250 260 270
pF1KB5 MRFTY
:..
CCDS14 RCFVF
>>CCDS33658.1 CYB5R3 gene_id:1727|Hs108|chr22 (301 aa)
initn: 1296 init1: 1250 opt: 1272 Z-score: 1524.7 bits: 290.2 E(32554): 1.3e-78
Smith-Waterman score: 1272; 63.5% identity (85.9% similar) in 277 aa overlap (29-305:26-301)
10 20 30 40 50 60
pF1KB5 MGIQTSPVLLASLGVGLVTLLGLAVGSYLVRRSRRPQVTLLDPNEKYLLRLLDKTTVSHN
: .:: : .:: .:. :: :::.:. .::.
CCDS33 MGAQLSTLGHMVLFPVWFLYSLLMKLFQRST-PAITLESPDIKYPLRLIDREIISHD
10 20 30 40 50
70 80 90 100 110 120
pF1KB5 TKRFRFALPTAHHTLGLPVGKHIYLSTRIDGSLVIRPYTPVTSDEDQGYVDLVIKVYLKG
:.:::::::. .: ::::::.:::::.::::.::.:::::..::.:.:.::::::::.:
CCDS33 TRRFRFALPSPQHILGLPVGQHIYLSARIDGNLVVRPYTPISSDDDKGFVDLVIKVYFKD
60 70 80 90 100 110
130 140 150 160 170 180
pF1KB5 VHPKFPEGGKMSQYLDSLKVGDVVEFRGPSGLLTYTGKGHFNIQPNKKSPPEPRVAKKLG
.::::: ::::::::.:...::..:::::::::.: :::.: :.:.::: : :..:..:
CCDS33 THPKFPAGGKMSQYLESMQIGDTIEFRGPSGLLVYQGKGKFAIRPDKKSNPIIRTVKSVG
120 130 140 150 160 170
190 200 210 220 230 240
pF1KB5 MIAGGTGITPMLQLIRAILKVPEDPTQCFLLFANQTEKDIILREDLEELQARYPNRFKLW
:::::::::::::.::::.: :.: : : :::::::::::.:: .::::. .. :::::
CCDS33 MIAGGTGITPMLQVIRAIMKDPDDHTVCHLLFANQTEKDILLRPELEELRNKHSARFKLW
180 190 200 210 220 230
250 260 270 280 290 300
pF1KB5 FTLDHPPKDWAYSKGFVTADMIREHLPAPGDDVLVLLCGPPPMVQLACHPNLDKLGYSQK
.:::. :. : :..:::. .:::.::: : .. :::.::::::.: :: ::::..:. .
CCDS33 YTLDRAPEAWDYGQGFVNEEMIRDHLPPPEEEPLVLMCGPPPMIQYACLPNLDHVGHPTE
240 250 260 270 280 290
pF1KB5 MRFTY
:..
CCDS33 RCFVF
300
>>CCDS54535.1 CYB5R3 gene_id:1727|Hs108|chr22 (334 aa)
initn: 1296 init1: 1250 opt: 1272 Z-score: 1524.1 bits: 290.2 E(32554): 1.4e-78
Smith-Waterman score: 1272; 63.5% identity (85.9% similar) in 277 aa overlap (29-305:59-334)
10 20 30 40 50
pF1KB5 MGIQTSPVLLASLGVGLVTLLGLAVGSYLVRRSRRPQVTLLDPNEKYLLRLLDKTTVS
: .:: : .:: .:. :: :::.:. .:
CCDS54 DGLDVERAESWELGHMVLFPVWFLYSLLMKLFQRST-PAITLESPDIKYPLRLIDREIIS
30 40 50 60 70 80
60 70 80 90 100 110
pF1KB5 HNTKRFRFALPTAHHTLGLPVGKHIYLSTRIDGSLVIRPYTPVTSDEDQGYVDLVIKVYL
:.:.:::::::. .: ::::::.:::::.::::.::.:::::..::.:.:.::::::::.
CCDS54 HDTRRFRFALPSPQHILGLPVGQHIYLSARIDGNLVVRPYTPISSDDDKGFVDLVIKVYF
90 100 110 120 130 140
120 130 140 150 160 170
pF1KB5 KGVHPKFPEGGKMSQYLDSLKVGDVVEFRGPSGLLTYTGKGHFNIQPNKKSPPEPRVAKK
: .::::: ::::::::.:...::..:::::::::.: :::.: :.:.::: : :..:.
CCDS54 KDTHPKFPAGGKMSQYLESMQIGDTIEFRGPSGLLVYQGKGKFAIRPDKKSNPIIRTVKS
150 160 170 180 190 200
180 190 200 210 220 230
pF1KB5 LGMIAGGTGITPMLQLIRAILKVPEDPTQCFLLFANQTEKDIILREDLEELQARYPNRFK
.::::::::::::::.::::.: :.: : : :::::::::::.:: .::::. .. :::
CCDS54 VGMIAGGTGITPMLQVIRAIMKDPDDHTVCHLLFANQTEKDILLRPELEELRNKHSARFK
210 220 230 240 250 260
240 250 260 270 280 290
pF1KB5 LWFTLDHPPKDWAYSKGFVTADMIREHLPAPGDDVLVLLCGPPPMVQLACHPNLDKLGYS
::.:::. :. : :..:::. .:::.::: : .. :::.::::::.: :: ::::..:.
CCDS54 LWYTLDRAPEAWDYGQGFVNEEMIRDHLPPPEEEPLVLMCGPPPMIQYACLPNLDHVGHP
270 280 290 300 310 320
300
pF1KB5 QKMRFTY
. :..
CCDS54 TERCFVF
330
>>CCDS7780.1 CYB5R2 gene_id:51700|Hs108|chr11 (276 aa)
initn: 1179 init1: 1179 opt: 1179 Z-score: 1414.0 bits: 269.6 E(32554): 1.9e-72
Smith-Waterman score: 1179; 58.8% identity (83.8% similar) in 272 aa overlap (34-305:5-276)
10 20 30 40 50 60
pF1KB5 QTSPVLLASLGVGLVTLLGLAVGSYLVRRSRRPQVTLLDPNEKYLLRLLDKTTVSHNTKR
:: .:: ::. :: : :..: .::::.:
CCDS77 MNSRRREPITLQDPEAKYPLPLIEKEKISHNTRR
10 20 30
70 80 90 100 110 120
pF1KB5 FRFALPTAHHTLGLPVGKHIYLSTRIDGSLVIRPYTPVTSDEDQGYVDLVIKVYLKGVHP
:::.::. :.::::::... : ..::. ::.: ::::.::.:.:.:::.::.:.:.:::
CCDS77 FRFGLPSPDHVLGLPVGNYVQLLAKIDNELVVRAYTPVSSDDDRGFVDLIIKIYFKNVHP
40 50 60 70 80 90
130 140 150 160 170 180
pF1KB5 KFPEGGKMSQYLDSLKVGDVVEFRGPSGLLTYTGKGHFNIQPNKKSPPEPRVAKKLGMIA
..::::::.:::...:.:... :::: : : : : :...:.:.. : :. .: .:::::
CCDS77 QYPEGGKMTQYLENMKIGETIFFRGPRGRLFYHGPGNLGIRPDQTSEPKKTLADHLGMIA
100 110 120 130 140 150
190 200 210 220 230 240
pF1KB5 GGTGITPMLQLIRAILKVPEDPTQCFLLFANQTEKDIILREDLEELQARYPNRFKLWFTL
::::::::::::: : : : : :. :.::::::.::..:..:::. .:..:.::.::
CCDS77 GGTGITPMLQLIRHITKDPSDRTRMSLIFANQTEEDILVRKELEEIARTHPDQFNLWYTL
160 170 180 190 200 210
250 260 270 280 290 300
pF1KB5 DHPPKDWAYSKGFVTADMIREHLPAPGDDVLVLLCGPPPMVQLACHPNLDKLGYSQKMRF
:.:: : ::.::::::::.:::: :. ..:.:.:::::..: : ::::.::::.: : :
CCDS77 DRPPIGWKYSSGFVTADMIKEHLPPPAKSTLILVCGPPPLIQTAAHPNLEKLGYTQDMIF
220 230 240 250 260 270
pF1KB5 TY
::
CCDS77 TY
305 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 12:32:13 2016 done: Sat Nov 5 12:32:14 2016
Total Scan time: 2.750 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]