FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB5366, 211 aa
  1>>>pF1KB5366 211 - 211 aa - 211 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.4507+/-0.000709; mu= 14.6188+/- 0.043
 mean_var=79.5263+/-15.728, 0's: 0 Z-trim(110.3): 12  B-trim: 561 in 1/50
 Lambda= 0.143820
 statistics sampled from 11523 (11525) to 11523 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.717), E-opt: 0.2 (0.354), width:  16
 Scan time:  1.990

The best scores are:                                      opt bits E(32554)
CCDS10979.1 RPL13 gene_id:6137|Hs108|chr16         ( 211) 1378 294.6   3e-80
CCDS58492.1 RPL13 gene_id:6137|Hs108|chr16         ( 164)  621 137.5 4.7e-33


>>CCDS10979.1 RPL13 gene_id:6137|Hs108|chr16              (211 aa)
 initn: 1378 init1: 1378 opt: 1378  Z-score: 1554.2  bits: 294.6 E(32554): 3e-80
Smith-Waterman score: 1378; 100.0% identity (100.0% similar) in 211 aa overlap (1-211:1-211)

               10        20        30        40        50        60
pF1KB5 MAPSRNGMVLKPHFHKDWQRRVATWFNQPARKIRRRKARQAKARRIAPRPASGPIRPIVR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 MAPSRNGMVLKPHFHKDWQRRVATWFNQPARKIRRRKARQAKARRIAPRPASGPIRPIVR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 CPTVRYHTKVRAGRGFSLEELRVAGIHKKVARTIGISVDPRRRNKSTESLQANVQRLKEY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 CPTVRYHTKVRAGRGFSLEELRVAGIHKKVARTIGISVDPRRRNKSTESLQANVQRLKEY
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB5 RSKLILFPRKPSAPKKGDSSAEELKLATQLTGPVMPVRNVYKKEKARVITEEEKNFKAFA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 RSKLILFPRKPSAPKKGDSSAEELKLATQLTGPVMPVRNVYKKEKARVITEEEKNFKAFA
              130       140       150       160       170       180

              190       200       210 
pF1KB5 SLRMARANARLFGIRAKRAKEAAEQDVEKKK
       :::::::::::::::::::::::::::::::
CCDS10 SLRMARANARLFGIRAKRAKEAAEQDVEKKK
              190       200       210 

>>CCDS58492.1 RPL13 gene_id:6137|Hs108|chr16              (164 aa)
 initn: 621 init1: 621 opt: 621  Z-score: 706.9  bits: 137.5 E(32554): 4.7e-33
Smith-Waterman score: 977; 77.7% identity (77.7% similar) in 211 aa overlap (1-211:1-164)

               10        20        30        40        50        60
pF1KB5 MAPSRNGMVLKPHFHKDWQRRVATWFNQPARKIRRRKARQAKARRIAPRPASGPIRPIVR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 MAPSRNGMVLKPHFHKDWQRRVATWFNQPARKIRRRKARQAKARRIAPRPASGPIRPIVR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 CPTVRYHTKVRAGRGFSLEELRVAGIHKKVARTIGISVDPRRRNKSTESLQANVQRLKEY
       :::::::::::::::::::::::::::::                               
CCDS58 CPTVRYHTKVRAGRGFSLEELRVAGIHKK-------------------------------
               70        80                                        

              130       140       150       160       170       180
pF1KB5 RSKLILFPRKPSAPKKGDSSAEELKLATQLTGPVMPVRNVYKKEKARVITEEEKNFKAFA
                       ::::::::::::::::::::::::::::::::::::::::::::
CCDS58 ----------------GDSSAEELKLATQLTGPVMPVRNVYKKEKARVITEEEKNFKAFA
                      90       100       110       120       130   

              190       200       210 
pF1KB5 SLRMARANARLFGIRAKRAKEAAEQDVEKKK
       :::::::::::::::::::::::::::::::
CCDS58 SLRMARANARLFGIRAKRAKEAAEQDVEKKK
           140       150       160    




211 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 12:31:44 2016 done: Sat Nov  5 12:31:45 2016
 Total Scan time:  1.990 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]