Result of FASTA (omim) for
pF1KB5363
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB5363, 154 aa
1>>>pF1KB5363 154 - 154 aa - 154 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.9023+/-0.000264; mu= 6.3857+/- 0.017
mean_var=126.5075+/-25.638, 0's: 0 Z-trim(123.7): 123 B-trim: 2209 in 2/54
Lambda= 0.114029
statistics sampled from 43952 (44097) to 43952 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.838), E-opt: 0.2 (0.517), width: 16
Scan time: 5.940
The best scores are: opt bits E(85289)
NP_055187 (OMIM: 612598) RING finger protein 11 [H ( 154) 1097 190.0 1.3e-48
NP_898864 (OMIM: 133239,604242) E3 ubiquitin-prote ( 685) 207 44.1 0.00049
NP_898865 (OMIM: 133239,604242) E3 ubiquitin-prote ( 685) 207 44.1 0.00049
XP_005266542 (OMIM: 133239,604242) PREDICTED: E3 u ( 685) 207 44.1 0.00049
XP_011533479 (OMIM: 133239,604242) PREDICTED: E3 u ( 685) 207 44.1 0.00049
NP_005968 (OMIM: 133239,604242) E3 ubiquitin-prote ( 685) 207 44.1 0.00049
XP_005266543 (OMIM: 133239,604242) PREDICTED: E3 u ( 685) 207 44.1 0.00049
XP_016869786 (OMIM: 612488) PREDICTED: E3 ubiquiti ( 402) 200 42.7 0.00072
XP_016869785 (OMIM: 612488) PREDICTED: E3 ubiquiti ( 402) 200 42.7 0.00072
XP_006716784 (OMIM: 612488) PREDICTED: E3 ubiquiti ( 432) 200 42.8 0.00076
XP_005251425 (OMIM: 612488) PREDICTED: E3 ubiquiti ( 432) 200 42.8 0.00076
NP_919309 (OMIM: 612488) E3 ubiquitin-protein liga ( 432) 200 42.8 0.00076
XP_011516014 (OMIM: 612488) PREDICTED: E3 ubiquiti ( 432) 200 42.8 0.00076
NP_919311 (OMIM: 612488) E3 ubiquitin-protein liga ( 432) 200 42.8 0.00076
XP_005251424 (OMIM: 612488) PREDICTED: E3 ubiquiti ( 432) 200 42.8 0.00076
XP_016869784 (OMIM: 612488) PREDICTED: E3 ubiquiti ( 432) 200 42.8 0.00076
NP_919313 (OMIM: 612488) E3 ubiquitin-protein liga ( 432) 200 42.8 0.00076
XP_011516015 (OMIM: 612488) PREDICTED: E3 ubiquiti ( 432) 200 42.8 0.00076
XP_005251423 (OMIM: 612488) PREDICTED: E3 ubiquiti ( 432) 200 42.8 0.00076
XP_016869783 (OMIM: 612488) PREDICTED: E3 ubiquiti ( 444) 200 42.8 0.00077
NP_919310 (OMIM: 612488) E3 ubiquitin-protein liga ( 465) 200 42.8 0.0008
XP_016879917 (OMIM: 610431) PREDICTED: E3 ubiquiti ( 227) 195 41.7 0.00081
NP_073618 (OMIM: 612488) E3 ubiquitin-protein liga ( 515) 200 42.8 0.00087
NP_001257458 (OMIM: 605840) E3 ubiquitin-protein l ( 985) 200 43.0 0.0015
XP_016877832 (OMIM: 605840) PREDICTED: E3 ubiquiti ( 985) 200 43.0 0.0015
XP_016877831 (OMIM: 605840) PREDICTED: E3 ubiquiti ( 986) 200 43.0 0.0015
NP_060080 (OMIM: 605840) E3 ubiquitin-protein liga ( 986) 200 43.0 0.0015
XP_016877829 (OMIM: 605840) PREDICTED: E3 ubiquiti ( 993) 200 43.0 0.0015
XP_016877830 (OMIM: 605840) PREDICTED: E3 ubiquiti ( 993) 200 43.0 0.0015
XP_016877828 (OMIM: 605840) PREDICTED: E3 ubiquiti ( 994) 200 43.0 0.0015
XP_016877827 (OMIM: 605840) PREDICTED: E3 ubiquiti ( 994) 200 43.0 0.0015
NP_001257459 (OMIM: 605840) E3 ubiquitin-protein l ( 994) 200 43.0 0.0015
NP_001257457 (OMIM: 605840) E3 ubiquitin-protein l ( 995) 200 43.0 0.0015
XP_016877826 (OMIM: 605840) PREDICTED: E3 ubiquiti (1002) 200 43.0 0.0015
XP_006720642 (OMIM: 605840) PREDICTED: E3 ubiquiti (1003) 200 43.0 0.0015
NP_001317260 (OMIM: 605840) E3 ubiquitin-protein l (1003) 200 43.0 0.0015
XP_016877825 (OMIM: 605840) PREDICTED: E3 ubiquiti (1009) 200 43.0 0.0015
XP_011520001 (OMIM: 605840) PREDICTED: E3 ubiquiti (1014) 200 43.0 0.0015
XP_006720638 (OMIM: 605840) PREDICTED: E3 ubiquiti (1026) 200 43.0 0.0015
XP_011519999 (OMIM: 605840) PREDICTED: E3 ubiquiti (1030) 200 43.0 0.0015
XP_011519998 (OMIM: 605840) PREDICTED: E3 ubiquiti (1031) 200 43.0 0.0015
XP_011519996 (OMIM: 605840) PREDICTED: E3 ubiquiti (1039) 200 43.0 0.0015
NP_001307294 (OMIM: 610431) E3 ubiquitin-protein l ( 315) 186 40.4 0.0029
NP_001307293 (OMIM: 610431) E3 ubiquitin-protein l ( 315) 186 40.4 0.0029
NP_001307292 (OMIM: 610431) E3 ubiquitin-protein l ( 315) 186 40.4 0.0029
NP_001307291 (OMIM: 610431) E3 ubiquitin-protein l ( 315) 186 40.4 0.0029
XP_016861150 (OMIM: 609247) PREDICTED: E3 ubiquiti ( 193) 182 39.6 0.0031
NP_001307289 (OMIM: 610431) E3 ubiquitin-protein l ( 350) 186 40.4 0.0032
NP_001307290 (OMIM: 610431) E3 ubiquitin-protein l ( 350) 186 40.4 0.0032
XP_016879916 (OMIM: 610431) PREDICTED: E3 ubiquiti ( 350) 186 40.4 0.0032
>>NP_055187 (OMIM: 612598) RING finger protein 11 [Homo (154 aa)
initn: 1097 init1: 1097 opt: 1097 Z-score: 993.9 bits: 190.0 E(85289): 1.3e-48
Smith-Waterman score: 1097; 100.0% identity (100.0% similar) in 154 aa overlap (1-154:1-154)
10 20 30 40 50 60
pF1KB5 MGNCLKSPTSDDISLLHESQSDRASFGEGTEPDQEPPPPYQEQVPVPVYHPTPSQTRLAT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 MGNCLKSPTSDDISLLHESQSDRASFGEGTEPDQEPPPPYQEQVPVPVYHPTPSQTRLAT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 QLTEEEQIRIAQRIGLIQHLPKGVYDPGRDGSEKKIRECVICMMDFVYGDPIRFLPCMHI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 QLTEEEQIRIAQRIGLIQHLPKGVYDPGRDGSEKKIRECVICMMDFVYGDPIRFLPCMHI
70 80 90 100 110 120
130 140 150
pF1KB5 YHLDCIDDWLMRSFTCPSCMEPVDAALLSSYETN
::::::::::::::::::::::::::::::::::
NP_055 YHLDCIDDWLMRSFTCPSCMEPVDAALLSSYETN
130 140 150
>>NP_898864 (OMIM: 133239,604242) E3 ubiquitin-protein l (685 aa)
initn: 207 init1: 207 opt: 207 Z-score: 193.4 bits: 44.1 E(85289): 0.00049
Smith-Waterman score: 207; 51.1% identity (73.3% similar) in 45 aa overlap (99-143:632-676)
70 80 90 100 110 120
pF1KB5 RIAQRIGLIQHLPKGVYDPGRDGSEKKIRECVICMMDFVYGDPIRFLPCMHIYHLDCIDD
: .:. :.: :. .: ::::: .:. :::
NP_898 RIRGLTKEQIDNLSTRHYEHNSIDSELGKICSVCISDYVTGNKLRQLPCMHEFHIHCIDR
610 620 630 640 650 660
130 140 150
pF1KB5 WLMRSFTCPSCMEPVDAALLSSYETN
:: .. ::: : .::
NP_898 WLSENCTCPICRQPVLGSNIANNG
670 680
>>NP_898865 (OMIM: 133239,604242) E3 ubiquitin-protein l (685 aa)
initn: 207 init1: 207 opt: 207 Z-score: 193.4 bits: 44.1 E(85289): 0.00049
Smith-Waterman score: 207; 51.1% identity (73.3% similar) in 45 aa overlap (99-143:632-676)
70 80 90 100 110 120
pF1KB5 RIAQRIGLIQHLPKGVYDPGRDGSEKKIRECVICMMDFVYGDPIRFLPCMHIYHLDCIDD
: .:. :.: :. .: ::::: .:. :::
NP_898 RIRGLTKEQIDNLSTRHYEHNSIDSELGKICSVCISDYVTGNKLRQLPCMHEFHIHCIDR
610 620 630 640 650 660
130 140 150
pF1KB5 WLMRSFTCPSCMEPVDAALLSSYETN
:: .. ::: : .::
NP_898 WLSENCTCPICRQPVLGSNIANNG
670 680
>>XP_005266542 (OMIM: 133239,604242) PREDICTED: E3 ubiqu (685 aa)
initn: 207 init1: 207 opt: 207 Z-score: 193.4 bits: 44.1 E(85289): 0.00049
Smith-Waterman score: 207; 51.1% identity (73.3% similar) in 45 aa overlap (99-143:632-676)
70 80 90 100 110 120
pF1KB5 RIAQRIGLIQHLPKGVYDPGRDGSEKKIRECVICMMDFVYGDPIRFLPCMHIYHLDCIDD
: .:. :.: :. .: ::::: .:. :::
XP_005 RIRGLTKEQIDNLSTRHYEHNSIDSELGKICSVCISDYVTGNKLRQLPCMHEFHIHCIDR
610 620 630 640 650 660
130 140 150
pF1KB5 WLMRSFTCPSCMEPVDAALLSSYETN
:: .. ::: : .::
XP_005 WLSENCTCPICRQPVLGSNIANNG
670 680
>>XP_011533479 (OMIM: 133239,604242) PREDICTED: E3 ubiqu (685 aa)
initn: 207 init1: 207 opt: 207 Z-score: 193.4 bits: 44.1 E(85289): 0.00049
Smith-Waterman score: 207; 51.1% identity (73.3% similar) in 45 aa overlap (99-143:632-676)
70 80 90 100 110 120
pF1KB5 RIAQRIGLIQHLPKGVYDPGRDGSEKKIRECVICMMDFVYGDPIRFLPCMHIYHLDCIDD
: .:. :.: :. .: ::::: .:. :::
XP_011 RIRGLTKEQIDNLSTRHYEHNSIDSELGKICSVCISDYVTGNKLRQLPCMHEFHIHCIDR
610 620 630 640 650 660
130 140 150
pF1KB5 WLMRSFTCPSCMEPVDAALLSSYETN
:: .. ::: : .::
XP_011 WLSENCTCPICRQPVLGSNIANNG
670 680
>>NP_005968 (OMIM: 133239,604242) E3 ubiquitin-protein l (685 aa)
initn: 207 init1: 207 opt: 207 Z-score: 193.4 bits: 44.1 E(85289): 0.00049
Smith-Waterman score: 207; 51.1% identity (73.3% similar) in 45 aa overlap (99-143:632-676)
70 80 90 100 110 120
pF1KB5 RIAQRIGLIQHLPKGVYDPGRDGSEKKIRECVICMMDFVYGDPIRFLPCMHIYHLDCIDD
: .:. :.: :. .: ::::: .:. :::
NP_005 RIRGLTKEQIDNLSTRHYEHNSIDSELGKICSVCISDYVTGNKLRQLPCMHEFHIHCIDR
610 620 630 640 650 660
130 140 150
pF1KB5 WLMRSFTCPSCMEPVDAALLSSYETN
:: .. ::: : .::
NP_005 WLSENCTCPICRQPVLGSNIANNG
670 680
>>XP_005266543 (OMIM: 133239,604242) PREDICTED: E3 ubiqu (685 aa)
initn: 207 init1: 207 opt: 207 Z-score: 193.4 bits: 44.1 E(85289): 0.00049
Smith-Waterman score: 207; 51.1% identity (73.3% similar) in 45 aa overlap (99-143:632-676)
70 80 90 100 110 120
pF1KB5 RIAQRIGLIQHLPKGVYDPGRDGSEKKIRECVICMMDFVYGDPIRFLPCMHIYHLDCIDD
: .:. :.: :. .: ::::: .:. :::
XP_005 RIRGLTKEQIDNLSTRHYEHNSIDSELGKICSVCISDYVTGNKLRQLPCMHEFHIHCIDR
610 620 630 640 650 660
130 140 150
pF1KB5 WLMRSFTCPSCMEPVDAALLSSYETN
:: .. ::: : .::
XP_005 WLSENCTCPICRQPVLGSNIANNG
670 680
>>XP_016869786 (OMIM: 612488) PREDICTED: E3 ubiquitin-pr (402 aa)
initn: 225 init1: 171 opt: 200 Z-score: 190.5 bits: 42.7 E(85289): 0.00072
Smith-Waterman score: 219; 33.9% identity (54.3% similar) in 127 aa overlap (36-139:267-390)
10 20 30 40 50
pF1KB5 KSPTSDDISLLHESQSDRASFGEGTEPDQEPPPPYQEQV--------PVP-VYHPTPSQT
:::::. .. ::: . :: :
XP_016 HQEVSFGVPYPPFMPRRLTGRSRYRSQQPIPPPPYHPSLLPYVLSMLPVPPAVGPTFS-F
240 250 260 270 280 290
60 70 80 90 100
pF1KB5 RLATQLTEEEQ----IRIAQRIGL----------IQHLPKGVYDPGRDGSEKKIRECVIC
.: .. : :. . .:.:.: :..::. ..:. ::. . ::.:
XP_016 ELDVEDGEVENYEALLNLAERLGEAKPRGLTKADIEQLPSYRFNPNNHQSEQTL--CVVC
300 310 320 330 340 350
110 120 130 140 150
pF1KB5 MMDFVYGDPIRFLPCMHIYHLDCIDDWLMRSFTCPSCMEPVDAALLSSYETN
: :: . .: ::: : .: :.: :: . ::: :
XP_016 MCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADASEVHRDSE
360 370 380 390 400
>>XP_016869785 (OMIM: 612488) PREDICTED: E3 ubiquitin-pr (402 aa)
initn: 225 init1: 171 opt: 200 Z-score: 190.5 bits: 42.7 E(85289): 0.00072
Smith-Waterman score: 219; 33.9% identity (54.3% similar) in 127 aa overlap (36-139:267-390)
10 20 30 40 50
pF1KB5 KSPTSDDISLLHESQSDRASFGEGTEPDQEPPPPYQEQV--------PVP-VYHPTPSQT
:::::. .. ::: . :: :
XP_016 HQEVSFGVPYPPFMPRRLTGRSRYRSQQPIPPPPYHPSLLPYVLSMLPVPPAVGPTFS-F
240 250 260 270 280 290
60 70 80 90 100
pF1KB5 RLATQLTEEEQ----IRIAQRIGL----------IQHLPKGVYDPGRDGSEKKIRECVIC
.: .. : :. . .:.:.: :..::. ..:. ::. . ::.:
XP_016 ELDVEDGEVENYEALLNLAERLGEAKPRGLTKADIEQLPSYRFNPNNHQSEQTL--CVVC
300 310 320 330 340 350
110 120 130 140 150
pF1KB5 MMDFVYGDPIRFLPCMHIYHLDCIDDWLMRSFTCPSCMEPVDAALLSSYETN
: :: . .: ::: : .: :.: :: . ::: :
XP_016 MCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADASEVHRDSE
360 370 380 390 400
>>XP_006716784 (OMIM: 612488) PREDICTED: E3 ubiquitin-pr (432 aa)
initn: 225 init1: 171 opt: 200 Z-score: 190.0 bits: 42.8 E(85289): 0.00076
Smith-Waterman score: 219; 33.9% identity (54.3% similar) in 127 aa overlap (36-139:297-420)
10 20 30 40 50
pF1KB5 KSPTSDDISLLHESQSDRASFGEGTEPDQEPPPPYQEQV--------PVP-VYHPTPSQT
:::::. .. ::: . :: :
XP_006 HQEVSFGVPYPPFMPRRLTGRSRYRSQQPIPPPPYHPSLLPYVLSMLPVPPAVGPTFS-F
270 280 290 300 310 320
60 70 80 90 100
pF1KB5 RLATQLTEEEQ----IRIAQRIGL----------IQHLPKGVYDPGRDGSEKKIRECVIC
.: .. : :. . .:.:.: :..::. ..:. ::. . ::.:
XP_006 ELDVEDGEVENYEALLNLAERLGEAKPRGLTKADIEQLPSYRFNPNNHQSEQTL--CVVC
330 340 350 360 370 380
110 120 130 140 150
pF1KB5 MMDFVYGDPIRFLPCMHIYHLDCIDDWLMRSFTCPSCMEPVDAALLSSYETN
: :: . .: ::: : .: :.: :: . ::: :
XP_006 MCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADASEVHRDSE
390 400 410 420 430
154 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 17:15:03 2016 done: Thu Nov 3 17:15:04 2016
Total Scan time: 5.940 Total Display time: -0.020
Function used was FASTA [36.3.4 Apr, 2011]