FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB5352, 445 aa
  1>>>pF1KB5352 445 - 445 aa - 445 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.8790+/-0.000471; mu= 14.5873+/- 0.029
 mean_var=73.4447+/-14.823, 0's: 0 Z-trim(108.6): 30  B-trim: 238 in 2/51
 Lambda= 0.149656
 statistics sampled from 16699 (16712) to 16699 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.55), E-opt: 0.2 (0.196), width:  16
 Scan time:  7.520

The best scores are:                                      opt bits E(85289)
NP_001559 (OMIM: 602210) eukaryotic translation in ( 445) 2945 645.7 6.9e-185
XP_016868887 (OMIM: 602210) PREDICTED: eukaryotic  ( 480) 2854 626.1 6.1e-179


>>NP_001559 (OMIM: 602210) eukaryotic translation initia  (445 aa)
 initn: 2945 init1: 2945 opt: 2945  Z-score: 3440.3  bits: 645.7 E(85289): 6.9e-185
Smith-Waterman score: 2945; 100.0% identity (100.0% similar) in 445 aa overlap (1-445:1-445)

               10        20        30        40        50        60
pF1KB5 MAEYDLTTRIAHFLDRHLVFPLLEFLSVKEIYNEKELLQGKLDLLSDTNMVDFAMDVYKN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MAEYDLTTRIAHFLDRHLVFPLLEFLSVKEIYNEKELLQGKLDLLSDTNMVDFAMDVYKN
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 LYSDDIPHALREKRTTVVAQLKQLQAETEPIVKMFEDPETTRQMQSTRDGRMLFDYLADK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LYSDDIPHALREKRTTVVAQLKQLQAETEPIVKMFEDPETTRQMQSTRDGRMLFDYLADK
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB5 HGFRQEYLDTLYRYAKFQYECGNYSGAAEYLYFFRVLVPATDRNALSSLWGKLASEILMQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 HGFRQEYLDTLYRYAKFQYECGNYSGAAEYLYFFRVLVPATDRNALSSLWGKLASEILMQ
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB5 NWDAAMEDLTRLKETIDNNSVSSPLQSLQQRTWLIHWSLFVFFNHPKGRDNIIDLFLYQP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NWDAAMEDLTRLKETIDNNSVSSPLQSLQQRTWLIHWSLFVFFNHPKGRDNIIDLFLYQP
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB5 QYLNAIQTMCPHILRYLTTAVITNKDVRKRRQVLKDLVKVIQQESYTYKDPITEFVECLY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QYLNAIQTMCPHILRYLTTAVITNKDVRKRRQVLKDLVKVIQQESYTYKDPITEFVECLY
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB5 VNFDFDGAQKKLRECESVLVNDFFLVACLEDFIENARLFIFETFCRIHQCISINMLADKL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VNFDFDGAQKKLRECESVLVNDFFLVACLEDFIENARLFIFETFCRIHQCISINMLADKL
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB5 NMTPEEAERWIVNLIRNARLDAKIDSKLGHVVMGNNAVSPYQQVIEKTKSLSFRSQMLAM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NMTPEEAERWIVNLIRNARLDAKIDSKLGHVVMGNNAVSPYQQVIEKTKSLSFRSQMLAM
              370       380       390       400       410       420

              430       440     
pF1KB5 NIEKKLNQNSRSEAPNWATQDSGFY
       :::::::::::::::::::::::::
NP_001 NIEKKLNQNSRSEAPNWATQDSGFY
              430       440     

>>XP_016868887 (OMIM: 602210) PREDICTED: eukaryotic tran  (480 aa)
 initn: 2854 init1: 2854 opt: 2854  Z-score: 3333.6  bits: 626.1 E(85289): 6.1e-179
Smith-Waterman score: 2854; 100.0% identity (100.0% similar) in 433 aa overlap (1-433:29-461)

                                           10        20        30  
pF1KB5                             MAEYDLTTRIAHFLDRHLVFPLLEFLSVKEIY
                                   ::::::::::::::::::::::::::::::::
XP_016 MRSTGSVCSFVGATNKVLVSTDSLFFGKMAEYDLTTRIAHFLDRHLVFPLLEFLSVKEIY
               10        20        30        40        50        60

             40        50        60        70        80        90  
pF1KB5 NEKELLQGKLDLLSDTNMVDFAMDVYKNLYSDDIPHALREKRTTVVAQLKQLQAETEPIV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 NEKELLQGKLDLLSDTNMVDFAMDVYKNLYSDDIPHALREKRTTVVAQLKQLQAETEPIV
               70        80        90       100       110       120

            100       110       120       130       140       150  
pF1KB5 KMFEDPETTRQMQSTRDGRMLFDYLADKHGFRQEYLDTLYRYAKFQYECGNYSGAAEYLY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 KMFEDPETTRQMQSTRDGRMLFDYLADKHGFRQEYLDTLYRYAKFQYECGNYSGAAEYLY
              130       140       150       160       170       180

            160       170       180       190       200       210  
pF1KB5 FFRVLVPATDRNALSSLWGKLASEILMQNWDAAMEDLTRLKETIDNNSVSSPLQSLQQRT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 FFRVLVPATDRNALSSLWGKLASEILMQNWDAAMEDLTRLKETIDNNSVSSPLQSLQQRT
              190       200       210       220       230       240

            220       230       240       250       260       270  
pF1KB5 WLIHWSLFVFFNHPKGRDNIIDLFLYQPQYLNAIQTMCPHILRYLTTAVITNKDVRKRRQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 WLIHWSLFVFFNHPKGRDNIIDLFLYQPQYLNAIQTMCPHILRYLTTAVITNKDVRKRRQ
              250       260       270       280       290       300

            280       290       300       310       320       330  
pF1KB5 VLKDLVKVIQQESYTYKDPITEFVECLYVNFDFDGAQKKLRECESVLVNDFFLVACLEDF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VLKDLVKVIQQESYTYKDPITEFVECLYVNFDFDGAQKKLRECESVLVNDFFLVACLEDF
              310       320       330       340       350       360

            340       350       360       370       380       390  
pF1KB5 IENARLFIFETFCRIHQCISINMLADKLNMTPEEAERWIVNLIRNARLDAKIDSKLGHVV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 IENARLFIFETFCRIHQCISINMLADKLNMTPEEAERWIVNLIRNARLDAKIDSKLGHVV
              370       380       390       400       410       420

            400       410       420       430       440            
pF1KB5 MGNNAVSPYQQVIEKTKSLSFRSQMLAMNIEKKLNQNSRSEAPNWATQDSGFY       
       :::::::::::::::::::::::::::::::::::::::::                   
XP_016 MGNNAVSPYQQVIEKTKSLSFRSQMLAMNIEKKLNQNSRSEVRTTHLLFCLGFSNHVIVT
              430       440       450       460       470       480




445 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 22:01:45 2016 done: Fri Nov  4 22:01:46 2016
 Total Scan time:  7.520 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]