FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB5352, 445 aa
  1>>>pF1KB5352 445 - 445 aa - 445 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.7241+/-0.00121; mu= 15.2963+/- 0.072
 mean_var=68.2538+/-13.620, 0's: 0 Z-trim(101.6): 27  B-trim: 159 in 1/49
 Lambda= 0.155243
 statistics sampled from 6561 (6567) to 6561 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.561), E-opt: 0.2 (0.202), width:  16
 Scan time:  2.640

The best scores are:                                      opt bits E(32554)
CCDS6308.1 EIF3E gene_id:3646|Hs108|chr8           ( 445) 2945 669.1 2.5e-192


>>CCDS6308.1 EIF3E gene_id:3646|Hs108|chr8                (445 aa)
 initn: 2945 init1: 2945 opt: 2945  Z-score: 3566.4  bits: 669.1 E(32554): 2.5e-192
Smith-Waterman score: 2945; 100.0% identity (100.0% similar) in 445 aa overlap (1-445:1-445)

               10        20        30        40        50        60
pF1KB5 MAEYDLTTRIAHFLDRHLVFPLLEFLSVKEIYNEKELLQGKLDLLSDTNMVDFAMDVYKN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 MAEYDLTTRIAHFLDRHLVFPLLEFLSVKEIYNEKELLQGKLDLLSDTNMVDFAMDVYKN
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 LYSDDIPHALREKRTTVVAQLKQLQAETEPIVKMFEDPETTRQMQSTRDGRMLFDYLADK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 LYSDDIPHALREKRTTVVAQLKQLQAETEPIVKMFEDPETTRQMQSTRDGRMLFDYLADK
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB5 HGFRQEYLDTLYRYAKFQYECGNYSGAAEYLYFFRVLVPATDRNALSSLWGKLASEILMQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 HGFRQEYLDTLYRYAKFQYECGNYSGAAEYLYFFRVLVPATDRNALSSLWGKLASEILMQ
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB5 NWDAAMEDLTRLKETIDNNSVSSPLQSLQQRTWLIHWSLFVFFNHPKGRDNIIDLFLYQP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 NWDAAMEDLTRLKETIDNNSVSSPLQSLQQRTWLIHWSLFVFFNHPKGRDNIIDLFLYQP
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB5 QYLNAIQTMCPHILRYLTTAVITNKDVRKRRQVLKDLVKVIQQESYTYKDPITEFVECLY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 QYLNAIQTMCPHILRYLTTAVITNKDVRKRRQVLKDLVKVIQQESYTYKDPITEFVECLY
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB5 VNFDFDGAQKKLRECESVLVNDFFLVACLEDFIENARLFIFETFCRIHQCISINMLADKL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 VNFDFDGAQKKLRECESVLVNDFFLVACLEDFIENARLFIFETFCRIHQCISINMLADKL
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB5 NMTPEEAERWIVNLIRNARLDAKIDSKLGHVVMGNNAVSPYQQVIEKTKSLSFRSQMLAM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 NMTPEEAERWIVNLIRNARLDAKIDSKLGHVVMGNNAVSPYQQVIEKTKSLSFRSQMLAM
              370       380       390       400       410       420

              430       440     
pF1KB5 NIEKKLNQNSRSEAPNWATQDSGFY
       :::::::::::::::::::::::::
CCDS63 NIEKKLNQNSRSEAPNWATQDSGFY
              430       440     




445 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 22:01:44 2016 done: Fri Nov  4 22:01:45 2016
 Total Scan time:  2.640 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]