FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB5332, 275 aa
  1>>>pF1KB5332 275 - 275 aa - 275 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.3741+/-0.00084; mu= 15.4098+/- 0.051
 mean_var=70.6138+/-14.152, 0's: 0 Z-trim(106.7): 14  B-trim: 0 in 0/51
 Lambda= 0.152626
 statistics sampled from 9104 (9107) to 9104 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.668), E-opt: 0.2 (0.28), width:  16
 Scan time:  2.330

The best scores are:                                      opt bits E(32554)
CCDS10782.1 POLR2C gene_id:5432|Hs108|chr16        ( 275) 1842 414.4 4.3e-116
CCDS4901.1 POLR1C gene_id:9533|Hs108|chr6          ( 346)  344 84.6   1e-16


>>CCDS10782.1 POLR2C gene_id:5432|Hs108|chr16             (275 aa)
 initn: 1842 init1: 1842 opt: 1842  Z-score: 2197.7  bits: 414.4 E(32554): 4.3e-116
Smith-Waterman score: 1842; 100.0% identity (100.0% similar) in 275 aa overlap (1-275:1-275)

               10        20        30        40        50        60
pF1KB5 MPYANQPTVRITELTDENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 MPYANQPTVRITELTDENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLH
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 DEFIAHRLGLIPLISDDIVDKLQYSRDCTCEEFCPECSVEFTLDVRCNEDQTRHVTSRDL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 DEFIAHRLGLIPLISDDIVDKLQYSRDCTCEEFCPECSVEFTLDVRCNEDQTRHVTSRDL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB5 ISNSPRVIPVTSRNRDNDPNDYVEQDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 ISNSPRVIPVTSRNRDNDPNDYVEQDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTA
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB5 GVAFEYDPDNALRHTVYPKPEEWPKSEYSELDEDESQAPYDPNGKPERFYYNVESCGSLR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 GVAFEYDPDNALRHTVYPKPEEWPKSEYSELDEDESQAPYDPNGKPERFYYNVESCGSLR
              190       200       210       220       230       240

              250       260       270     
pF1KB5 PETIVLSALSGLKKKLSDLQTQLSHEIQSDVLTIN
       :::::::::::::::::::::::::::::::::::
CCDS10 PETIVLSALSGLKKKLSDLQTQLSHEIQSDVLTIN
              250       260       270     

>>CCDS4901.1 POLR1C gene_id:9533|Hs108|chr6               (346 aa)
 initn: 354 init1: 185 opt: 344  Z-score: 413.6  bits: 84.6 E(32554): 1e-16
Smith-Waterman score: 344; 33.7% identity (63.4% similar) in 205 aa overlap (9-202:51-251)

                                     10        20        30        
pF1KB5                       MPYANQPTVRITELTDENVKFIIENTDLAVANSIRRVF
                                     : .... .....: . . : :.::..::..
CCDS49 VRNVHTTDFPGNYSGYDDAWDQDRFEKNFRVDVVHMDENSLEFDMVGIDAAIANAFRRIL
               30        40        50        60        70        80

       40        50        60        70        80        90        
pF1KB5 IAEVPIIAIDWVQIDANSSVLHDEFIAHRLGLIPLISDDIVDKLQYSRDCTCEEFCPECS
       .:::: .:.. : .  :.:...::..::::::::. .:    .:   :.   ::     .
CCDS49 LAEVPTMAVEKVLVYNNTSIVQDEILAHRLGLIPIHADP---RLFEYRNQGDEEGTEIDT
               90       100       110          120       130       

      100       110          120             130       140         
pF1KB5 VEFTLDVRCNEDQTRHVTSRD---LISNSPRV------IPVTSRNRDNDPNDYVE--QDD
       ..: :.:::...      : :   :  :          ::. ..  :  :.  ..  .::
CCDS49 LQFRLQVRCTRNPHAAKDSSDPNELYVNHKVYTRHMTWIPLGNQA-DLFPEGTIRPVHDD
       140       150       160       170       180        190      

       150       160       170       180       190       200       
pF1KB5 ILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVAFEYDPDNALRHTVYPKPEEWPKSE
       :::..:: :::. :  .  ::.::.:::..:.: ....  :: .: . :  .  :     
CCDS49 ILIAQLRPGQEIDLLMHCVKGIGKDHAKFSPVATASYRLLPDITLLEPVEGEAAEELSRC
        200       210       220       230       240       250      

       210       220       230       240       250       260       
pF1KB5 YSELDEDESQAPYDPNGKPERFYYNVESCGSLRPETIVLSALSGLKKKLSDLQTQLSHEI
                                                                   
CCDS49 FSPGVIEVQEVQGKKVARVANPRLDTFSREIFRNEKLKKVVRLARVRDHYIFSVESTGVL
        260       270       280       290       300       310      




275 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 03:38:02 2016 done: Fri Nov  4 03:38:03 2016
 Total Scan time:  2.330 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]