FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB5331, 415 aa
  1>>>pF1KB5331 415 - 415 aa - 415 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.5932+/-0.00101; mu= 11.0910+/- 0.061
 mean_var=98.5083+/-19.071, 0's: 0 Z-trim(106.6): 82  B-trim: 32 in 1/50
 Lambda= 0.129222
 statistics sampled from 9030 (9103) to 9030 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.638), E-opt: 0.2 (0.28), width:  16
 Scan time:  2.960

The best scores are:                                      opt bits E(32554)
CCDS13965.1 PICK1 gene_id:9463|Hs108|chr22         ( 415) 2709 515.6 3.4e-146


>>CCDS13965.1 PICK1 gene_id:9463|Hs108|chr22              (415 aa)
 initn: 2709 init1: 2709 opt: 2709  Z-score: 2738.2  bits: 515.6 E(32554): 3.4e-146
Smith-Waterman score: 2709; 100.0% identity (100.0% similar) in 415 aa overlap (1-415:1-415)

               10        20        30        40        50        60
pF1KB5 MFADLDYDIEEDKLGIPTVPGKVTLQKDAQNLIGISIGGGAQYCPCLYIVQVFDNTPAAL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MFADLDYDIEEDKLGIPTVPGKVTLQKDAQNLIGISIGGGAQYCPCLYIVQVFDNTPAAL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 DGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQADPKQGMSLDIVLKK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 DGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQADPKQGMSLDIVLKK
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB5 VKHRLVENMSSGTADALGLSRAILCNDGLVKRLEELERTAELYKGMTEHTKNLLRAFYEL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 VKHRLVENMSSGTADALGLSRAILCNDGLVKRLEELERTAELYKGMTEHTKNLLRAFYEL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB5 SQTHRAFGDVFSVIGVREPQPAASEAFVKFADAHRSIEKFGIRLLKTIKPMLTDLNTYLN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 SQTHRAFGDVFSVIGVREPQPAASEAFVKFADAHRSIEKFGIRLLKTIKPMLTDLNTYLN
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB5 KAIPDTRLTIKKYLDVKFEYLSYCLKVKEMDDEEYSCIALGEPLYRVSTGNYEYRLILRC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 KAIPDTRLTIKKYLDVKFEYLSYCLKVKEMDDEEYSCIALGEPLYRVSTGNYEYRLILRC
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB5 RQEARARFSQMRKDVLEKMELLDQKHVQDIVFQLQRLVSTMSKYYNDCYAVLRDADVFPI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 RQEARARFSQMRKDVLEKMELLDQKHVQDIVFQLQRLVSTMSKYYNDCYAVLRDADVFPI
              310       320       330       340       350       360

              370       380       390       400       410     
pF1KB5 EVDLAHTTLAYGLNQEEFTDGEEEEEEEDTAAGEPSRDTRGAAGPLDKGGSWCDS
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 EVDLAHTTLAYGLNQEEFTDGEEEEEEEDTAAGEPSRDTRGAAGPLDKGGSWCDS
              370       380       390       400       410     




415 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 22:28:15 2016 done: Thu Nov  3 22:28:16 2016
 Total Scan time:  2.960 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]