Result of FASTA (ccds) for
pF1KB5318
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB5318, 425 aa
1>>>pF1KB5318 425 - 425 aa - 425 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 7.0998+/-0.00116; mu= 7.7438+/- 0.068
mean_var=127.3559+/-26.868, 0's: 0 Z-trim(105.7): 150 B-trim: 66 in 1/50
Lambda= 0.113649
statistics sampled from 8403 (8585) to 8403 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.638), E-opt: 0.2 (0.264), width: 16
Scan time: 2.880
The best scores are: opt bits E(32554)
CCDS14179.1 RBBP7 gene_id:5931|Hs108|chrX ( 425) 2930 492.3 3.7e-139
CCDS56598.1 RBBP7 gene_id:5931|Hs108|chrX ( 469) 2897 486.9 1.7e-137
CCDS44105.1 RBBP4 gene_id:5928|Hs108|chr1 ( 424) 2652 446.7 2e-125
CCDS366.1 RBBP4 gene_id:5928|Hs108|chr1 ( 425) 2640 444.8 7.6e-125
CCDS44106.1 RBBP4 gene_id:5928|Hs108|chr1 ( 390) 2451 413.7 1.5e-115
>>CCDS14179.1 RBBP7 gene_id:5931|Hs108|chrX (425 aa)
initn: 2930 init1: 2930 opt: 2930 Z-score: 2611.8 bits: 492.3 E(32554): 3.7e-139
Smith-Waterman score: 2930; 100.0% identity (100.0% similar) in 425 aa overlap (1-425:1-425)
10 20 30 40 50 60
pF1KB5 MASKEMFEDTVEERVINEEYKIWKKNTPFLYDLVMTHALQWPSLTVQWLPEVTKPEGKDY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 MASKEMFEDTVEERVINEEYKIWKKNTPFLYDLVMTHALQWPSLTVQWLPEVTKPEGKDY
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 ALHWLVLGTHTSDEQNHLVVARVHIPNDDAQFDASHCDSDKGEFGGFGSVTGKIECEIKI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 ALHWLVLGTHTSDEQNHLVVARVHIPNDDAQFDASHCDSDKGEFGGFGSVTGKIECEIKI
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB5 NHEGEVNRARYMPQNPHIIATKTPSSDVLVFDYTKHPAKPDPSGECNPDLRLRGHQKEGY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 NHEGEVNRARYMPQNPHIIATKTPSSDVLVFDYTKHPAKPDPSGECNPDLRLRGHQKEGY
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB5 GLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHES
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 GLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHES
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB5 LFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 LFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALW
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB5 DLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAED
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 DLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAED
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB5 GPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIWQMAENIYNDEESDVTTSEL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 GPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIWQMAENIYNDEESDVTTSEL
370 380 390 400 410 420
pF1KB5 EGQGS
:::::
CCDS14 EGQGS
>>CCDS56598.1 RBBP7 gene_id:5931|Hs108|chrX (469 aa)
initn: 2897 init1: 2897 opt: 2897 Z-score: 2581.9 bits: 486.9 E(32554): 1.7e-137
Smith-Waterman score: 2897; 99.3% identity (99.8% similar) in 422 aa overlap (4-425:48-469)
10 20 30
pF1KB5 MASKEMFEDTVEERVINEEYKIWKKNTPFLYDL
. .:::::::::::::::::::::::::::
CCDS56 WRDQACGLLLHVHLSSRLGRAAPVRTGRHLRTVFEDTVEERVINEEYKIWKKNTPFLYDL
20 30 40 50 60 70
40 50 60 70 80 90
pF1KB5 VMTHALQWPSLTVQWLPEVTKPEGKDYALHWLVLGTHTSDEQNHLVVARVHIPNDDAQFD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 VMTHALQWPSLTVQWLPEVTKPEGKDYALHWLVLGTHTSDEQNHLVVARVHIPNDDAQFD
80 90 100 110 120 130
100 110 120 130 140 150
pF1KB5 ASHCDSDKGEFGGFGSVTGKIECEIKINHEGEVNRARYMPQNPHIIATKTPSSDVLVFDY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 ASHCDSDKGEFGGFGSVTGKIECEIKINHEGEVNRARYMPQNPHIIATKTPSSDVLVFDY
140 150 160 170 180 190
160 170 180 190 200 210
pF1KB5 TKHPAKPDPSGECNPDLRLRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 TKHPAKPDPSGECNPDLRLRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEG
200 210 220 230 240 250
220 230 240 250 260 270
pF1KB5 KIVDAKAIFTGHSAVVEDVAWHLLHESLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 KIVDAKAIFTGHSAVVEDVAWHLLHESLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTA
260 270 280 290 300 310
280 290 300 310 320 330
pF1KB5 EVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 EVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILA
320 330 340 350 360 370
340 350 360 370 380 390
pF1KB5 SSGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 SSGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVS
380 390 400 410 420 430
400 410 420
pF1KB5 EDNIMQIWQMAENIYNDEESDVTTSELEGQGS
::::::::::::::::::::::::::::::::
CCDS56 EDNIMQIWQMAENIYNDEESDVTTSELEGQGS
440 450 460
>>CCDS44105.1 RBBP4 gene_id:5928|Hs108|chr1 (424 aa)
initn: 2780 init1: 2633 opt: 2652 Z-score: 2365.4 bits: 446.7 E(32554): 2e-125
Smith-Waterman score: 2652; 89.4% identity (96.7% similar) in 425 aa overlap (1-425:1-424)
10 20 30 40 50 60
pF1KB5 MASKEMFEDTVEERVINEEYKIWKKNTPFLYDLVMTHALQWPSLTVQWLPEVTKPEGKDY
::.:: :.:.:::::::::::::::::::::::::::::.:::::.::::.::.:::::.
CCDS44 MADKEAFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKDF
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 ALHWLVLGTHTSDEQNHLVVARVHIPNDDAQFDASHCDSDKGEFGGFGSVTGKIECEIKI
..: :::::::::::::::.: :..::::::::::: ::.::::::::::.:::: ::::
CCDS44 SIHRLVLGTHTSDEQNHLVIASVQLPNDDAQFDASHYDSEKGEFGGFGSVSGKIEIEIKI
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB5 NHEGEVNRARYMPQNPHIIATKTPSSDVLVFDYTKHPAKPDPSGECNPDLRLRGHQKEGY
:::::::::::::::: ::::::::::::::::::::.::::::::::::::::::::::
CCDS44 NHEGEVNRARYMPQNPCIIATKTPSSDVLVFDYTKHPSKPDPSGECNPDLRLRGHQKEGY
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB5 GLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHES
::::: ::::::::::::::.:::::.: :::::.::::.:::::.::::::.:::::::
CCDS44 GLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVEDVSWHLLHES
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB5 LFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALW
:::::::::::::::::::.:::::: :::::::::::::::::::::::::::::::::
CCDS44 LFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALW
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB5 DLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAED
::::::::::.:::::::::::.::::::::::::::::::::::::::::::: :::::
CCDS44 DLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQSPEDAED
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB5 GPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIWQMAENIYNDEESDVTTSEL
:::::::::::::::::::::::::::::::::::::::.:::::::::::. . ...
CCDS44 GPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQVWQMAENIYNDEDPEGSVDP-
370 380 390 400 410
pF1KB5 EGQGS
:::::
CCDS44 EGQGS
420
>>CCDS366.1 RBBP4 gene_id:5928|Hs108|chr1 (425 aa)
initn: 2739 init1: 2592 opt: 2640 Z-score: 2354.8 bits: 444.8 E(32554): 7.6e-125
Smith-Waterman score: 2640; 89.2% identity (96.5% similar) in 426 aa overlap (1-425:1-425)
10 20 30 40 50
pF1KB5 MASKEM-FEDTVEERVINEEYKIWKKNTPFLYDLVMTHALQWPSLTVQWLPEVTKPEGKD
::.:: :.:.:::::::::::::::::::::::::::::.:::::.::::.::.:::::
CCDS36 MADKEAAFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKD
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB5 YALHWLVLGTHTSDEQNHLVVARVHIPNDDAQFDASHCDSDKGEFGGFGSVTGKIECEIK
...: :::::::::::::::.: :..::::::::::: ::.::::::::::.:::: :::
CCDS36 FSIHRLVLGTHTSDEQNHLVIASVQLPNDDAQFDASHYDSEKGEFGGFGSVSGKIEIEIK
70 80 90 100 110 120
120 130 140 150 160 170
pF1KB5 INHEGEVNRARYMPQNPHIIATKTPSSDVLVFDYTKHPAKPDPSGECNPDLRLRGHQKEG
::::::::::::::::: ::::::::::::::::::::.:::::::::::::::::::::
CCDS36 INHEGEVNRARYMPQNPCIIATKTPSSDVLVFDYTKHPSKPDPSGECNPDLRLRGHQKEG
130 140 150 160 170 180
180 190 200 210 220 230
pF1KB5 YGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHE
:::::: ::::::::::::::.:::::.: :::::.::::.:::::.::::::.::::::
CCDS36 YGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVEDVSWHLLHE
190 200 210 220 230 240
240 250 260 270 280 290
pF1KB5 SLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVAL
::::::::::::::::::::.:::::: ::::::::::::::::::::::::::::::::
CCDS36 SLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVAL
250 260 270 280 290 300
300 310 320 330 340 350
pF1KB5 WDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAE
:::::::::::.:::::::::::.::::::::::::::::::::::::::::::: ::::
CCDS36 WDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQSPEDAE
310 320 330 340 350 360
360 370 380 390 400 410
pF1KB5 DGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIWQMAENIYNDEESDVTTSE
::::::::::::::::::::::::::::::::::::::::.:::::::::::. . ...
CCDS36 DGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQVWQMAENIYNDEDPEGSVDP
370 380 390 400 410 420
420
pF1KB5 LEGQGS
:::::
CCDS36 -EGQGS
>>CCDS44106.1 RBBP4 gene_id:5928|Hs108|chr1 (390 aa)
initn: 2579 init1: 2432 opt: 2451 Z-score: 2187.9 bits: 413.7 E(32554): 1.5e-115
Smith-Waterman score: 2451; 89.5% identity (96.7% similar) in 391 aa overlap (35-425:1-390)
10 20 30 40 50 60
pF1KB5 EMFEDTVEERVINEEYKIWKKNTPFLYDLVMTHALQWPSLTVQWLPEVTKPEGKDYALHW
:::::.:::::.::::.::.:::::...:
CCDS44 MTHALEWPSLTAQWLPDVTRPEGKDFSIHR
10 20 30
70 80 90 100 110 120
pF1KB5 LVLGTHTSDEQNHLVVARVHIPNDDAQFDASHCDSDKGEFGGFGSVTGKIECEIKINHEG
:::::::::::::::.: :..::::::::::: ::.::::::::::.:::: ::::::::
CCDS44 LVLGTHTSDEQNHLVIASVQLPNDDAQFDASHYDSEKGEFGGFGSVSGKIEIEIKINHEG
40 50 60 70 80 90
130 140 150 160 170 180
pF1KB5 EVNRARYMPQNPHIIATKTPSSDVLVFDYTKHPAKPDPSGECNPDLRLRGHQKEGYGLSW
:::::::::::: ::::::::::::::::::::.::::::::::::::::::::::::::
CCDS44 EVNRARYMPQNPCIIATKTPSSDVLVFDYTKHPSKPDPSGECNPDLRLRGHQKEGYGLSW
100 110 120 130 140 150
190 200 210 220 230 240
pF1KB5 NSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESLFGS
: ::::::::::::::.:::::.: :::::.::::.:::::.::::::.:::::::::::
CCDS44 NPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVEDVSWHLLHESLFGS
160 170 180 190 200 210
250 260 270 280 290 300
pF1KB5 VADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRN
:::::::::::::::.:::::: :::::::::::::::::::::::::::::::::::::
CCDS44 VADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRN
220 230 240 250 260 270
310 320 330 340 350 360
pF1KB5 LKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAEDGPPE
::::::.:::::::::::.::::::::::::::::::::::::::::::: :::::::::
CCDS44 LKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQSPEDAEDGPPE
280 290 300 310 320 330
370 380 390 400 410 420
pF1KB5 LLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIWQMAENIYNDEESDVTTSELEGQG
:::::::::::::::::::::::::::::::::::.:::::::::::. . ... ::::
CCDS44 LLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQVWQMAENIYNDEDPEGSVDP-EGQG
340 350 360 370 380
pF1KB5 S
:
CCDS44 S
390
425 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 03:35:06 2016 done: Fri Nov 4 03:35:07 2016
Total Scan time: 2.880 Total Display time: 0.040
Function used was FASTA [36.3.4 Apr, 2011]