Result of FASTA (ccds) for
pF1KB5316
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB5316, 450 aa
1>>>pF1KB5316 450 - 450 aa - 450 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.3589+/-0.00115; mu= 13.0341+/- 0.069
mean_var=90.1847+/-18.036, 0's: 0 Z-trim(103.5): 36 B-trim: 4 in 2/50
Lambda= 0.135054
statistics sampled from 7426 (7446) to 7426 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.587), E-opt: 0.2 (0.229), width: 16
Scan time: 2.710
The best scores are: opt bits E(32554)
CCDS45257.1 COPS2 gene_id:9318|Hs108|chr15 ( 450) 2944 584.1 9.8e-167
CCDS32235.1 COPS2 gene_id:9318|Hs108|chr15 ( 443) 2867 569.1 3.2e-162
CCDS11272.1 PSMD11 gene_id:5717|Hs108|chr17 ( 422) 386 85.7 1e-16
>>CCDS45257.1 COPS2 gene_id:9318|Hs108|chr15 (450 aa)
initn: 2944 init1: 2944 opt: 2944 Z-score: 3106.9 bits: 584.1 E(32554): 9.8e-167
Smith-Waterman score: 2944; 100.0% identity (100.0% similar) in 450 aa overlap (1-450:1-450)
10 20 30 40 50 60
pF1KB5 MSDMEDDFMCDDEEDYDLEYSEDSNSEPNVDLENQYYNSKALKEDDPKAALSSFQKVLEL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 MSDMEDDFMCDDEEDYDLEYSEDSNSEPNVDLENQYYNSKALKEDDPKAALSSFQKVLEL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 EGEKGEWGFKALKQMIKINFKLTNFPEMMNRYKQLLTYIRSAVTRNYSEKSINSILDYIS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 EGEKGEWGFKALKQMIKINFKLTNFPEMMNRYKQLLTYIRSAVTRNYSEKSINSILDYIS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB5 TSKQNSDFLCQMDLLQEFYETTLEALKDAKNDRLWFKTNTKLGKLYLEREEYGKLQKILR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 TSKQNSDFLCQMDLLQEFYETTLEALKDAKNDRLWFKTNTKLGKLYLEREEYGKLQKILR
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB5 QLHQSCQTDDGEDDLKKGTQLLEIYALEIQMYTAQKNNKKLKALYEQSLHIKSAIPHPLI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 QLHQSCQTDDGEDDLKKGTQLLEIYALEIQMYTAQKNNKKLKALYEQSLHIKSAIPHPLI
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB5 MGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLANMLMKSGINP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 MGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLANMLMKSGINP
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB5 FDSQEAKPYKNDPEILAMTNLVSAYQNNDITEFEKILKTNHSNIMDDPFIREHIEELLRN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 FDSQEAKPYKNDPEILAMTNLVSAYQNNDITEFEKILKTNHSNIMDDPFIREHIEELLRN
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB5 IRTQVLIKLIKPYTRIHIPFISKELNIDVADVESLLVQCILDNTIHGRIDQVNQLLELDH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 IRTQVLIKLIKPYTRIHIPFISKELNIDVADVESLLVQCILDNTIHGRIDQVNQLLELDH
370 380 390 400 410 420
430 440 450
pF1KB5 QKRGGARYTALDKWTNQLNSLNQAVVSKLA
::::::::::::::::::::::::::::::
CCDS45 QKRGGARYTALDKWTNQLNSLNQAVVSKLA
430 440 450
>>CCDS32235.1 COPS2 gene_id:9318|Hs108|chr15 (443 aa)
initn: 2089 init1: 2089 opt: 2867 Z-score: 3026.0 bits: 569.1 E(32554): 3.2e-162
Smith-Waterman score: 2867; 98.4% identity (98.4% similar) in 450 aa overlap (1-450:1-443)
10 20 30 40 50 60
pF1KB5 MSDMEDDFMCDDEEDYDLEYSEDSNSEPNVDLENQYYNSKALKEDDPKAALSSFQKVLEL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 MSDMEDDFMCDDEEDYDLEYSEDSNSEPNVDLENQYYNSKALKEDDPKAALSSFQKVLEL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 EGEKGEWGFKALKQMIKINFKLTNFPEMMNRYKQLLTYIRSAVTRNYSEKSINSILDYIS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 EGEKGEWGFKALKQMIKINFKLTNFPEMMNRYKQLLTYIRSAVTRNYSEKSINSILDYIS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB5 TSKQNSDFLCQMDLLQEFYETTLEALKDAKNDRLWFKTNTKLGKLYLEREEYGKLQKILR
:::: :::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 TSKQ-------MDLLQEFYETTLEALKDAKNDRLWFKTNTKLGKLYLEREEYGKLQKILR
130 140 150 160 170
190 200 210 220 230 240
pF1KB5 QLHQSCQTDDGEDDLKKGTQLLEIYALEIQMYTAQKNNKKLKALYEQSLHIKSAIPHPLI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 QLHQSCQTDDGEDDLKKGTQLLEIYALEIQMYTAQKNNKKLKALYEQSLHIKSAIPHPLI
180 190 200 210 220 230
250 260 270 280 290 300
pF1KB5 MGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLANMLMKSGINP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 MGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLANMLMKSGINP
240 250 260 270 280 290
310 320 330 340 350 360
pF1KB5 FDSQEAKPYKNDPEILAMTNLVSAYQNNDITEFEKILKTNHSNIMDDPFIREHIEELLRN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 FDSQEAKPYKNDPEILAMTNLVSAYQNNDITEFEKILKTNHSNIMDDPFIREHIEELLRN
300 310 320 330 340 350
370 380 390 400 410 420
pF1KB5 IRTQVLIKLIKPYTRIHIPFISKELNIDVADVESLLVQCILDNTIHGRIDQVNQLLELDH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 IRTQVLIKLIKPYTRIHIPFISKELNIDVADVESLLVQCILDNTIHGRIDQVNQLLELDH
360 370 380 390 400 410
430 440 450
pF1KB5 QKRGGARYTALDKWTNQLNSLNQAVVSKLA
::::::::::::::::::::::::::::::
CCDS32 QKRGGARYTALDKWTNQLNSLNQAVVSKLA
420 430 440
>>CCDS11272.1 PSMD11 gene_id:5717|Hs108|chr17 (422 aa)
initn: 302 init1: 229 opt: 386 Z-score: 413.8 bits: 85.7 E(32554): 1e-16
Smith-Waterman score: 396; 26.5% identity (57.7% similar) in 388 aa overlap (49-411:4-380)
20 30 40 50 60 70
pF1KB5 EYSEDSNSEPNVDLENQYYNSKALKEDDPKAALSSFQKVLELEGEKGEWGFKALKQMIKI
::. ::.. : . : .. :....:
CCDS11 MAAAAVVEFQRAQSLLSTDREASIDILHSIVKR
10 20 30
80 90 100 110 120 130
pF1KB5 NFKLTNFPEMMNRYKQLLTYIRSAVTRNYSEKSINSILDYI-----STSKQNSDFLCQ--
... : : .. .: . . : .... . ....: :. : :: .. : .
CCDS11 DIQ-ENDEEAVQVKEQSILELGSLLAKTGQAAELGGLLKYVRPFLNSISKAKAARLVRSL
40 50 60 70 80 90
140 150 160 170 180
pF1KB5 MDLLQEF-------YETTLEALKDAKNDRLWF---KTNTKLGKLYLEREEYGKLQKILRQ
.::. .. : :: .. ::... : ...: .::.. ..: . .. :
CCDS11 LDLFLDMEAATGQEVELCLECIEWAKSEKRTFLRQALEARLVSLYFDTKRYQEALHLGSQ
100 110 120 130 140 150
190 200 210 220 230
pF1KB5 LHQSCQTDDGEDDLKKGTQLLEIYALEIQMYTAQKNNKKLKALYEQSLHIKSAI--PHPL
: . . : . . :.:. :: . : : .: : .: .. .:: : :
CCDS11 LLRELKKMDDK------ALLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCP-PK
160 170 180 190 200
240 250 260 270 280 290
pF1KB5 IMGVIRECGGKMHL-REGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLANMLMKSGI
..... .: .: .: ... :.. :.:::..:: ::. : :::..: ......
CCDS11 LQATLDMQSGIIHAAEEKDWKTAYSYFYEAFEGYDSIDSPKAITSLKYMLLCKIMLNT--
210 220 230 240 250 260
300 310 320 330 340 350
pF1KB5 NPFDSQEAKPYK-----NDPEILAMTNLVSAYQNNDITEFEKILKTNHSNIMDDPFIREH
: : : : . :. ...: .: ....::: : .... :::.: :
CCDS11 -PEDVQALVSGKLALRYAGRQTEALKCVAQASKNRSLADFEKALTDYRAELRDDPIISTH
270 280 290 300 310 320
360 370 380 390 400 410
pF1KB5 IEELLRNIRTQVLIKLIKPYTRIHIPFISKELNIDVADVESLLVQCILDNTIHGRIDQVN
. .: :. : ::..:.:..:..: ::. .... :::: : : :::. .:: .::
CCDS11 LAKLYDNLLEQNLIRVIEPFSRVQIEHISSLIKLSKADVERKLSQMILDKKFHGILDQGE
330 340 350 360 370 380
420 430 440 450
pF1KB5 QLLELDHQKRGGARYTALDKWTNQLNSLNQAVVSKLA
CCDS11 GVLIIFDEPPVDKTYEAALETIQNMSKVVDSLYNKAKKLT
390 400 410 420
450 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 00:57:43 2016 done: Sat Nov 5 00:57:43 2016
Total Scan time: 2.710 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]