FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB5300, 417 aa
  1>>>pF1KB5300 417 - 417 aa - 417 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.2022+/-0.000408; mu= 17.4963+/- 0.025
 mean_var=65.1496+/-13.033, 0's: 0 Z-trim(110.5): 18  B-trim: 76 in 1/50
 Lambda= 0.158898
 statistics sampled from 18805 (18812) to 18805 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.594), E-opt: 0.2 (0.221), width:  16
 Scan time:  7.980

The best scores are:                                      opt bits E(85289)
NP_000282 (OMIM: 300653,311800) phosphoglycerate k ( 417) 2717 632.1  8e-181
NP_620061 (OMIM: 172270) phosphoglycerate kinase 2 ( 417) 2459 572.9 5.1e-163


>>NP_000282 (OMIM: 300653,311800) phosphoglycerate kinas  (417 aa)
 initn: 2717 init1: 2717 opt: 2717  Z-score: 3367.4  bits: 632.1 E(85289): 8e-181
Smith-Waterman score: 2717; 100.0% identity (100.0% similar) in 417 aa overlap (1-417:1-417)

               10        20        30        40        50        60
pF1KB5 MSLSNKLTLDKLDVKGKRVVMRVDFNVPMKNNQITNNQRIKAAVPSIKFCLDNGAKSVVL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 MSLSNKLTLDKLDVKGKRVVMRVDFNVPMKNNQITNNQRIKAAVPSIKFCLDNGAKSVVL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 MSHLGRPDGVPMPDKYSLEPVAVELKSLLGKDVLFLKDCVGPEVEKACANPAAGSVILLE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 MSHLGRPDGVPMPDKYSLEPVAVELKSLLGKDVLFLKDCVGPEVEKACANPAAGSVILLE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB5 NLRFHVEEEGKGKDASGNKVKAEPAKIEAFRASLSKLGDVYVNDAFGTAHRAHSSMVGVN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 NLRFHVEEEGKGKDASGNKVKAEPAKIEAFRASLSKLGDVYVNDAFGTAHRAHSSMVGVN
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB5 LPQKAGGFLMKKELNYFAKALESPERPFLAILGGAKVADKIQLINNMLDKVNEMIIGGGM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 LPQKAGGFLMKKELNYFAKALESPERPFLAILGGAKVADKIQLINNMLDKVNEMIIGGGM
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB5 AFTFLKVLNNMEIGTSLFDEEGAKIVKDLMSKAEKNGVKITLPVDFVTADKFDENAKTGQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 AFTFLKVLNNMEIGTSLFDEEGAKIVKDLMSKAEKNGVKITLPVDFVTADKFDENAKTGQ
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB5 ATVASGIPAGWMGLDCGPESSKKYAEAVTRAKQIVWNGPVGVFEWEAFARGTKALMDEVV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 ATVASGIPAGWMGLDCGPESSKKYAEAVTRAKQIVWNGPVGVFEWEAFARGTKALMDEVV
              310       320       330       340       350       360

              370       380       390       400       410       
pF1KB5 KATSRGCITIIGGGDTATCCAKWNTEDKVSHVSTGGGASLELLEGKVLPGVDALSNI
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 KATSRGCITIIGGGDTATCCAKWNTEDKVSHVSTGGGASLELLEGKVLPGVDALSNI
              370       380       390       400       410       

>>NP_620061 (OMIM: 172270) phosphoglycerate kinase 2 [Ho  (417 aa)
 initn: 2521 init1: 2459 opt: 2459  Z-score: 3047.7  bits: 572.9 E(85289): 5.1e-163
Smith-Waterman score: 2459; 87.3% identity (97.8% similar) in 417 aa overlap (1-417:1-417)

               10        20        30        40        50        60
pF1KB5 MSLSNKLTLDKLDVKGKRVVMRVDFNVPMKNNQITNNQRIKAAVPSIKFCLDNGAKSVVL
       ::::.:::::::::.::::.::::::::::.:::::::::::..::::.:::::::.:::
NP_620 MSLSKKLTLDKLDVRGKRVIMRVDFNVPMKKNQITNNQRIKASIPSIKYCLDNGAKAVVL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 MSHLGRPDGVPMPDKYSLEPVAVELKSLLGKDVLFLKDCVGPEVEKACANPAAGSVILLE
       :::::::::::::::::: :::::::::::::::::::::: :::::::::: :::::::
NP_620 MSHLGRPDGVPMPDKYSLAPVAVELKSLLGKDVLFLKDCVGAEVEKACANPAPGSVILLE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB5 NLRFHVEEEGKGKDASGNKVKAEPAKIEAFRASLSKLGDVYVNDAFGTAHRAHSSMVGVN
       ::::::::::::.: ::.:.:::: :::::::::::::::::::::::::::::::::::
NP_620 NLRFHVEEEGKGQDPSGKKIKAEPDKIEAFRASLSKLGDVYVNDAFGTAHRAHSSMVGVN
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB5 LPQKAGGFLMKKELNYFAKALESPERPFLAILGGAKVADKIQLINNMLDKVNEMIIGGGM
       ::.::.::::::::.:::::::.: :::::::::::::::::::.:::::::::::::::
NP_620 LPHKASGFLMKKELDYFAKALENPVRPFLAILGGAKVADKIQLIKNMLDKVNEMIIGGGM
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB5 AFTFLKVLNNMEIGTSLFDEEGAKIVKDLMSKAEKNGVKITLPVDFVTADKFDENAKTGQ
       :.::::::::::::.:::::::::::::.:.::.::::.::.::::::.:::::::..:.
NP_620 AYTFLKVLNNMEIGASLFDEEGAKIVKDIMAKAQKNGVRITFPVDFVTGDKFDENAQVGK
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB5 ATVASGIPAGWMGLDCGPESSKKYAEAVTRAKQIVWNGPVGVFEWEAFARGTKALMDEVV
       :::::::  :::::::::::.:..:..:..:. ::::::.:::::.:::.::::::::.:
NP_620 ATVASGISPGWMGLDCGPESNKNHAQVVAQARLIVWNGPLGVFEWDAFAKGTKALMDEIV
              310       320       330       340       350       360

              370       380       390       400       410       
pF1KB5 KATSRGCITIIGGGDTATCCAKWNTEDKVSHVSTGGGASLELLEGKVLPGVDALSNI
       ::::.::::.::::::::::::::::::::::::::::::::::::.::::.::::.
NP_620 KATSKGCITVIGGGDTATCCAKWNTEDKVSHVSTGGGASLELLEGKILPGVEALSNM
              370       380       390       400       410       




417 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 22:27:46 2016 done: Thu Nov  3 22:27:47 2016
 Total Scan time:  7.980 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]