Result of FASTA (ccds) for
pF1KB5284
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB5284, 189 aa
1>>>pF1KB5284 189 - 189 aa - 189 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 8.0372+/-0.0009; mu= 1.8570+/- 0.054
mean_var=189.1288+/-37.227, 0's: 0 Z-trim(112.0): 18 B-trim: 15 in 1/52
Lambda= 0.093260
statistics sampled from 12808 (12820) to 12808 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.75), E-opt: 0.2 (0.394), width: 16
Scan time: 2.270
The best scores are: opt bits E(32554)
CCDS64852.1 STMN4 gene_id:81551|Hs108|chr8 ( 189) 1219 175.4 1.8e-44
CCDS64851.1 STMN4 gene_id:81551|Hs108|chr8 ( 167) 1052 152.9 9.8e-38
CCDS6055.1 STMN4 gene_id:81551|Hs108|chr8 ( 216) 985 144.0 6.1e-35
CCDS64854.1 STMN4 gene_id:81551|Hs108|chr8 ( 203) 871 128.6 2.4e-30
CCDS269.1 STMN1 gene_id:3925|Hs108|chr1 ( 149) 623 95.1 2.1e-20
CCDS43748.1 STMN2 gene_id:11075|Hs108|chr8 ( 179) 601 92.2 1.9e-19
CCDS63330.1 STMN3 gene_id:50861|Hs108|chr20 ( 169) 562 87.0 6.9e-18
CCDS13529.1 STMN3 gene_id:50861|Hs108|chr20 ( 180) 562 87.0 7.3e-18
CCDS44090.1 STMN1 gene_id:3925|Hs108|chr1 ( 174) 542 84.3 4.6e-17
CCDS56542.1 STMN2 gene_id:11075|Hs108|chr8 ( 187) 529 82.6 1.6e-16
>>CCDS64852.1 STMN4 gene_id:81551|Hs108|chr8 (189 aa)
initn: 1219 init1: 1219 opt: 1219 Z-score: 911.7 bits: 175.4 E(32554): 1.8e-44
Smith-Waterman score: 1219; 100.0% identity (100.0% similar) in 189 aa overlap (1-189:1-189)
10 20 30 40 50 60
pF1KB5 MTLAAYKEKMKELPLVSLFCSCFLADPLNKSSYKYEADTVDLNWCVISDMEVIELNKCTS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 MTLAAYKEKMKELPLVSLFCSCFLADPLNKSSYKYEADTVDLNWCVISDMEVIELNKCTS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 GQSFEVILKPPSFDGVPEFNASLPRRRDPSLEEIQKKLEAAEERRKYQEAELLKHLAEKR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 GQSFEVILKPPSFDGVPEFNASLPRRRDPSLEEIQKKLEAAEERRKYQEAELLKHLAEKR
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB5 EHEREVIQKAIEENNNFIKMAKEKLAQKMESNKENREAHLAAMLERLQEKDKHAEEVRKN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 EHEREVIQKAIEENNNFIKMAKEKLAQKMESNKENREAHLAAMLERLQEKDKHAEEVRKN
130 140 150 160 170 180
pF1KB5 KELKEEASR
:::::::::
CCDS64 KELKEEASR
>>CCDS64851.1 STMN4 gene_id:81551|Hs108|chr8 (167 aa)
initn: 1052 init1: 1052 opt: 1052 Z-score: 791.0 bits: 152.9 E(32554): 9.8e-38
Smith-Waterman score: 1052; 98.2% identity (98.8% similar) in 165 aa overlap (10-174:1-165)
10 20 30 40 50 60
pF1KB5 MTLAAYKEKMKELPLVSLFCSCFLADPLNKSSYKYEADTVDLNWCVISDMEVIELNKCTS
:::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 MKELPLVSLFCSCFLADPLNKSSYKYEADTVDLNWCVISDMEVIELNKCTS
10 20 30 40 50
70 80 90 100 110 120
pF1KB5 GQSFEVILKPPSFDGVPEFNASLPRRRDPSLEEIQKKLEAAEERRKYQEAELLKHLAEKR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 GQSFEVILKPPSFDGVPEFNASLPRRRDPSLEEIQKKLEAAEERRKYQEAELLKHLAEKR
60 70 80 90 100 110
130 140 150 160 170 180
pF1KB5 EHEREVIQKAIEENNNFIKMAKEKLAQKMESNKENREAHLAAMLERLQEKDKHAEEVRKN
::::::::::::::::::::::::::::::::::::::::::::::::::. :
CCDS64 EHEREVIQKAIEENNNFIKMAKEKLAQKMESNKENREAHLAAMLERLQEKEPPAAR
120 130 140 150 160
pF1KB5 KELKEEASR
>>CCDS6055.1 STMN4 gene_id:81551|Hs108|chr8 (216 aa)
initn: 984 init1: 984 opt: 985 Z-score: 740.7 bits: 144.0 E(32554): 6.1e-35
Smith-Waterman score: 1155; 87.5% identity (87.5% similar) in 216 aa overlap (1-189:1-216)
10 20 30
pF1KB5 MTLAAYKEKMKELPLVSLFCSCFLADPLNKSSYKYE------------------------
::::::::::::::::::::::::::::::::::::
CCDS60 MTLAAYKEKMKELPLVSLFCSCFLADPLNKSSYKYEGWCGRQCRRKDESQRKDSADWRER
10 20 30 40 50 60
40 50 60 70 80 90
pF1KB5 ---ADTVDLNWCVISDMEVIELNKCTSGQSFEVILKPPSFDGVPEFNASLPRRRDPSLEE
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 RAQADTVDLNWCVISDMEVIELNKCTSGQSFEVILKPPSFDGVPEFNASLPRRRDPSLEE
70 80 90 100 110 120
100 110 120 130 140 150
pF1KB5 IQKKLEAAEERRKYQEAELLKHLAEKREHEREVIQKAIEENNNFIKMAKEKLAQKMESNK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 IQKKLEAAEERRKYQEAELLKHLAEKREHEREVIQKAIEENNNFIKMAKEKLAQKMESNK
130 140 150 160 170 180
160 170 180
pF1KB5 ENREAHLAAMLERLQEKDKHAEEVRKNKELKEEASR
::::::::::::::::::::::::::::::::::::
CCDS60 ENREAHLAAMLERLQEKDKHAEEVRKNKELKEEASR
190 200 210
>>CCDS64854.1 STMN4 gene_id:81551|Hs108|chr8 (203 aa)
initn: 1091 init1: 867 opt: 871 Z-score: 658.2 bits: 128.6 E(32554): 2.4e-30
Smith-Waterman score: 1041; 85.1% identity (85.6% similar) in 201 aa overlap (1-174:1-201)
10 20 30
pF1KB5 MTLAAYKEKMKELPLVSLFCSCFLADPLNKSSYKYE------------------------
::::::::::::::::::::::::::::::::::::
CCDS64 MTLAAYKEKMKELPLVSLFCSCFLADPLNKSSYKYEGWCGRQCRRKDESQRKDSADWRER
10 20 30 40 50 60
40 50 60 70 80 90
pF1KB5 ---ADTVDLNWCVISDMEVIELNKCTSGQSFEVILKPPSFDGVPEFNASLPRRRDPSLEE
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 RAQADTVDLNWCVISDMEVIELNKCTSGQSFEVILKPPSFDGVPEFNASLPRRRDPSLEE
70 80 90 100 110 120
100 110 120 130 140 150
pF1KB5 IQKKLEAAEERRKYQEAELLKHLAEKREHEREVIQKAIEENNNFIKMAKEKLAQKMESNK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 IQKKLEAAEERRKYQEAELLKHLAEKREHEREVIQKAIEENNNFIKMAKEKLAQKMESNK
130 140 150 160 170 180
160 170 180
pF1KB5 ENREAHLAAMLERLQEKDKHAEEVRKNKELKEEASR
:::::::::::::::::. :
CCDS64 ENREAHLAAMLERLQEKEPPAAR
190 200
>>CCDS269.1 STMN1 gene_id:3925|Hs108|chr1 (149 aa)
initn: 711 init1: 623 opt: 623 Z-score: 479.7 bits: 95.1 E(32554): 2.1e-20
Smith-Waterman score: 623; 72.1% identity (90.0% similar) in 140 aa overlap (48-187:4-143)
20 30 40 50 60 70
pF1KB5 LFCSCFLADPLNKSSYKYEADTVDLNWCVISDMEVIELNKCTSGQSFEVILKPPSFDGVP
::..: ::.: .:::.::.::.: : ..::
CCDS26 MASSDIQVKELEKRASGQAFELILSPRSKESVP
10 20 30
80 90 100 110 120 130
pF1KB5 EFNASLPRRRDPSLEEIQKKLEAAEERRKYQEAELLKHLAEKREHEREVIQKAIEENNNF
:: : :...: ::::::::::::::::: .:::.::.::::::::.::.::::::::::
CCDS26 EFPLSPPKKKDLSLEEIQKKLEAAEERRKSHEAEVLKQLAEKREHEKEVLQKAIEENNNF
40 50 60 70 80 90
140 150 160 170 180
pF1KB5 IKMAKEKLAQKMESNKENREAHLAAMLERLQEKDKHAEEVRKNKELKEEASR
:::.:::..:::.:::::::..:: ::::.::::: :::::::: :. :
CCDS26 SKMAEEKLTHKMEANKENREAQMAAKLERLREKDKHIEEVRKNKESKDPADETEAD
100 110 120 130 140
>>CCDS43748.1 STMN2 gene_id:11075|Hs108|chr8 (179 aa)
initn: 755 init1: 590 opt: 601 Z-score: 462.6 bits: 92.2 E(32554): 1.9e-19
Smith-Waterman score: 698; 63.3% identity (80.3% similar) in 188 aa overlap (2-188:4-178)
10 20 30 40 50
pF1KB5 MTLAAYKEKMKELPLVSLFCSCFLADPLNKSSYKYEADTVDLNWCVISDMEVIELNKC
: ::::::::: ..::.:::: .: : . : :. :::: ..::
CCDS43 MAKTAMAYKEKMKELSMLSLICSCFYPEPRNINIYTYD------------DMEVKQINKR
10 20 30 40
60 70 80 90 100 110
pF1KB5 TSGQSFEVILKPPS-FDGVPEFNASLPRRRDPSLEEIQKKLEAAEERRKYQEAELLKHLA
.:::.::.:::::: .. .:. :: :...: ::::::::::::::::: :::..::.::
CCDS43 ASGQAFELILKPPSPISEAPRTLAS-PKKKDLSLEEIQKKLEAAEERRKSQEAQVLKQLA
50 60 70 80 90 100
120 130 140 150 160 170
pF1KB5 EKREHEREVIQKAIEENNNFIKMAKEKLAQKMESNKENREAHLAAMLERLQEKDKHAEEV
:::::::::.:::.:::::: :::.::: :::. ::::::.:::..::::::..:: ::
CCDS43 EKREHEREVLQKALEENNNFSKMAEEKLILKMEQIKENREANLAAIIERLQEKERHAAEV
110 120 130 140 150 160
180
pF1KB5 RKNKELKEEASR
:.::::. : :
CCDS43 RRNKELQVELSG
170
>>CCDS63330.1 STMN3 gene_id:50861|Hs108|chr20 (169 aa)
initn: 661 init1: 438 opt: 562 Z-score: 434.6 bits: 87.0 E(32554): 6.9e-18
Smith-Waterman score: 624; 59.1% identity (78.5% similar) in 181 aa overlap (10-188:1-168)
10 20 30 40 50 60
pF1KB5 MTLAAYKEKMKELPLVSLFCSCFLADPLNKSSYKYEADTVDLNWCVISDMEVIELNKCTS
:::: ..::.:::: ..: .. :.: .:::: .:.: .:
CCDS63 MKELSVLSLICSCFYTQPHPNTVYQY------------GDMEVKQLDKRAS
10 20 30
70 80 90 100 110
pF1KB5 GQSFEVILKPPSFDGVPE--FNASLPRRRDPSLEEIQKKLEAAEERRKYQEAELLKHLAE
::::::::: :: : :: . .: :...: ::::.::.::::::::: :::..::.:::
CCDS63 GQSFEVILKSPS-DLSPESPMLSSPPKKKDTSLEELQKRLEAAEERRKTQEAQVLKQLAE
40 50 60 70 80 90
120 130 140 150 160 170
pF1KB5 KREHEREVIQKAIEENNNFIKMAKEKLAQKMESNKENREAHLAAMLERLQEKDKHAEEVR
.:::::::..::.:::::: ..:.::: ::: .:: :::::::. :::.::. :: :::
CCDS63 RREHEREVLHKALEENNNFSRQAEEKLNYKMELSKEIREAHLAALRERLREKELHAAEVR
100 110 120 130 140 150
180
pF1KB5 KNKELKEEASR
.::: .:: :
CCDS63 RNKEQREEMSG
160
>>CCDS13529.1 STMN3 gene_id:50861|Hs108|chr20 (180 aa)
initn: 700 init1: 438 opt: 562 Z-score: 434.2 bits: 87.0 E(32554): 7.3e-18
Smith-Waterman score: 663; 59.8% identity (79.4% similar) in 189 aa overlap (2-188:4-179)
10 20 30 40 50
pF1KB5 MTLAAYKEKMKELPLVSLFCSCFLADPLNKSSYKYEADTVDLNWCVISDMEVIELNKC
:..::::::::: ..::.:::: ..: .. :.: .:::: .:.:
CCDS13 MASTISAYKEKMKELSVLSLICSCFYTQPHPNTVYQY------------GDMEVKQLDKR
10 20 30 40
60 70 80 90 100 110
pF1KB5 TSGQSFEVILKPPSFDGVPE--FNASLPRRRDPSLEEIQKKLEAAEERRKYQEAELLKHL
.:::::::::: :: : :: . .: :...: ::::.::.::::::::: :::..::.:
CCDS13 ASGQSFEVILKSPS-DLSPESPMLSSPPKKKDTSLEELQKRLEAAEERRKTQEAQVLKQL
50 60 70 80 90 100
120 130 140 150 160 170
pF1KB5 AEKREHEREVIQKAIEENNNFIKMAKEKLAQKMESNKENREAHLAAMLERLQEKDKHAEE
::.:::::::..::.:::::: ..:.::: ::: .:: :::::::. :::.::. :: :
CCDS13 AERREHEREVLHKALEENNNFSRQAEEKLNYKMELSKEIREAHLAALRERLREKELHAAE
110 120 130 140 150 160
180
pF1KB5 VRKNKELKEEASR
::.::: .:: :
CCDS13 VRRNKEQREEMSG
170 180
>>CCDS44090.1 STMN1 gene_id:3925|Hs108|chr1 (174 aa)
initn: 542 init1: 542 opt: 542 Z-score: 419.9 bits: 84.3 E(32554): 4.6e-17
Smith-Waterman score: 542; 71.5% identity (91.1% similar) in 123 aa overlap (48-170:4-126)
20 30 40 50 60 70
pF1KB5 LFCSCFLADPLNKSSYKYEADTVDLNWCVISDMEVIELNKCTSGQSFEVILKPPSFDGVP
::..: ::.: .:::.::.::.: : ..::
CCDS44 MASSDIQVKELEKRASGQAFELILSPRSKESVP
10 20 30
80 90 100 110 120 130
pF1KB5 EFNASLPRRRDPSLEEIQKKLEAAEERRKYQEAELLKHLAEKREHEREVIQKAIEENNNF
:: : :...: ::::::::::::::::: .:::.::.::::::::.::.::::::::::
CCDS44 EFPLSPPKKKDLSLEEIQKKLEAAEERRKSHEAEVLKQLAEKREHEKEVLQKAIEENNNF
40 50 60 70 80 90
140 150 160 170 180
pF1KB5 IKMAKEKLAQKMESNKENREAHLAAMLERLQEKDKHAEEVRKNKELKEEASR
:::.:::..:::.:::::::..:: ::::.::
CCDS44 SKMAEEKLTHKMEANKENREAQMAAKLERLREKMYFWTHGPGAHPAQISAEQSCLHSVPA
100 110 120 130 140 150
CCDS44 LCPALGLQSALITWSDLSHHH
160 170
>>CCDS56542.1 STMN2 gene_id:11075|Hs108|chr8 (187 aa)
initn: 625 init1: 518 opt: 529 Z-score: 410.0 bits: 82.6 E(32554): 1.6e-16
Smith-Waterman score: 626; 63.5% identity (80.0% similar) in 170 aa overlap (2-170:4-160)
10 20 30 40 50
pF1KB5 MTLAAYKEKMKELPLVSLFCSCFLADPLNKSSYKYEADTVDLNWCVISDMEVIELNKC
: ::::::::: ..::.:::: .: : . : :. :::: ..::
CCDS56 MAKTAMAYKEKMKELSMLSLICSCFYPEPRNINIYTYD------------DMEVKQINKR
10 20 30 40
60 70 80 90 100 110
pF1KB5 TSGQSFEVILKPPS-FDGVPEFNASLPRRRDPSLEEIQKKLEAAEERRKYQEAELLKHLA
.:::.::.:::::: .. .:. :: :...: ::::::::::::::::: :::..::.::
CCDS56 ASGQAFELILKPPSPISEAPRTLAS-PKKKDLSLEEIQKKLEAAEERRKSQEAQVLKQLA
50 60 70 80 90 100
120 130 140 150 160 170
pF1KB5 EKREHEREVIQKAIEENNNFIKMAKEKLAQKMESNKENREAHLAAMLERLQEKDKHAEEV
:::::::::.:::.:::::: :::.::: :::. ::::::.:::..::::::
CCDS56 EKREHEREVLQKALEENNNFSKMAEEKLILKMEQIKENREANLAAIIERLQEKLVKFISS
110 120 130 140 150 160
180
pF1KB5 RKNKELKEEASR
CCDS56 ELKESIESQFLELQREGEKQ
170 180
189 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 12:24:07 2016 done: Sat Nov 5 12:24:08 2016
Total Scan time: 2.270 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]