FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB5282, 225 aa
  1>>>pF1KB5282 225 - 225 aa - 225 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.6173+/-0.00106; mu= 11.5769+/- 0.063
 mean_var=60.2226+/-12.104, 0's: 0 Z-trim(102.3): 18  B-trim: 0 in 0/50
 Lambda= 0.165270
 statistics sampled from 6892 (6896) to 6892 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.596), E-opt: 0.2 (0.212), width:  16
 Scan time:  1.790

The best scores are:                                      opt bits E(32554)
CCDS7145.1 PRTFDC1 gene_id:56952|Hs108|chr10       ( 225) 1497 365.6 1.4e-101
CCDS60506.1 PRTFDC1 gene_id:56952|Hs108|chr10      ( 190) 1212 297.7 3.5e-81
CCDS14641.1 HPRT1 gene_id:3251|Hs108|chrX          ( 218) 1002 247.6 4.7e-66


>>CCDS7145.1 PRTFDC1 gene_id:56952|Hs108|chr10            (225 aa)
 initn: 1497 init1: 1497 opt: 1497  Z-score: 1937.0  bits: 365.6 E(32554): 1.4e-101
Smith-Waterman score: 1497; 99.6% identity (99.6% similar) in 225 aa overlap (1-225:1-225)

               10        20        30        40        50        60
pF1KB5 MAGSSEEAPDYGRGVVIMDDWPGYDLNLFTYPQHYYGDWEYVLIPHGIIVDRIERLAKDI
       :::::::::::::::::::::::::::::::::::::: :::::::::::::::::::::
CCDS71 MAGSSEEAPDYGRGVVIMDDWPGYDLNLFTYPQHYYGDLEYVLIPHGIIVDRIERLAKDI
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 MKDIGYSDIMVLCVLKGGYKFCADLVEHLKNISRNSDRFVSMKVDFIRLKSYRNDQSMGE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS71 MKDIGYSDIMVLCVLKGGYKFCADLVEHLKNISRNSDRFVSMKVDFIRLKSYRNDQSMGE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB5 MQIIGGDDLSTLAGKNVLIVEDVVGTGRTMKALLSNIEKYKPNMIKVASLLVKRTSRSDG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS71 MQIIGGDDLSTLAGKNVLIVEDVVGTGRTMKALLSNIEKYKPNMIKVASLLVKRTSRSDG
              130       140       150       160       170       180

              190       200       210       220     
pF1KB5 FRPDYAGFEIPNLFVVGYALDYNEYFRDLNHICVINEHGKEKYRV
       :::::::::::::::::::::::::::::::::::::::::::::
CCDS71 FRPDYAGFEIPNLFVVGYALDYNEYFRDLNHICVINEHGKEKYRV
              190       200       210       220     

>>CCDS60506.1 PRTFDC1 gene_id:56952|Hs108|chr10           (190 aa)
 initn: 1212 init1: 1212 opt: 1212  Z-score: 1571.0  bits: 297.7 E(32554): 3.5e-81
Smith-Waterman score: 1212; 99.5% identity (99.5% similar) in 184 aa overlap (1-184:1-184)

               10        20        30        40        50        60
pF1KB5 MAGSSEEAPDYGRGVVIMDDWPGYDLNLFTYPQHYYGDWEYVLIPHGIIVDRIERLAKDI
       :::::::::::::::::::::::::::::::::::::: :::::::::::::::::::::
CCDS60 MAGSSEEAPDYGRGVVIMDDWPGYDLNLFTYPQHYYGDLEYVLIPHGIIVDRIERLAKDI
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 MKDIGYSDIMVLCVLKGGYKFCADLVEHLKNISRNSDRFVSMKVDFIRLKSYRNDQSMGE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 MKDIGYSDIMVLCVLKGGYKFCADLVEHLKNISRNSDRFVSMKVDFIRLKSYRNDQSMGE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB5 MQIIGGDDLSTLAGKNVLIVEDVVGTGRTMKALLSNIEKYKPNMIKVASLLVKRTSRSDG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 MQIIGGDDLSTLAGKNVLIVEDVVGTGRTMKALLSNIEKYKPNMIKVASLLVKRTSRSDG
              130       140       150       160       170       180

              190       200       210       220     
pF1KB5 FRPDYAGFEIPNLFVVGYALDYNEYFRDLNHICVINEHGKEKYRV
       ::::                                         
CCDS60 FRPDSHMRHQ                                   
              190                                   

>>CCDS14641.1 HPRT1 gene_id:3251|Hs108|chrX               (218 aa)
 initn: 1018 init1: 1002 opt: 1002  Z-score: 1299.4  bits: 247.6 E(32554): 4.7e-66
Smith-Waterman score: 1002; 67.8% identity (87.7% similar) in 211 aa overlap (14-224:7-217)

               10        20        30        40        50        60
pF1KB5 MAGSSEEAPDYGRGVVIMDDWPGYDLNLFTYPQHYYGDWEYVLIPHGIIVDRIERLAKDI
                    :::: :: :::::.::  :.::  : : :.::::.:.:: ::::.:.
CCDS14        MATRSPGVVISDDEPGYDLDLFCIPNHYAEDLERVFIPHGLIMDRTERLARDV
                      10        20        30        40        50   

               70        80        90       100       110       120
pF1KB5 MKDIGYSDIMVLCVLKGGYKFCADLVEHLKNISRNSDRFVSMKVDFIRLKSYRNDQSMGE
       ::..:   :..:::::::::: :::....: ..::::: . : ::::::::: :::: :.
CCDS14 MKEMGGHHIVALCVLKGGYKFFADLLDYIKALNRNSDRSIPMTVDFIRLKSYCNDQSTGD
            60        70        80        90       100       110   

              130       140       150       160       170       180
pF1KB5 MQIIGGDDLSTLAGKNVLIVEDVVGTGRTMKALLSNIEKYKPNMIKVASLLVKRTSRSDG
       ...:::::::::.:::::::::.. ::.::..::: ...:.:.:.:::::::::: :: :
CCDS14 IKVIGGDDLSTLTGKNVLIVEDIIDTGKTMQTLLSLVRQYNPKMVKVASLLVKRTPRSVG
           120       130       140       150       160       170   

              190       200       210       220     
pF1KB5 FRPDYAGFEIPNLFVVGYALDYNEYFRDLNHICVINEHGKEKYRV
       ..::..:::::. ::::::::::::::::::.:::.: :: ::. 
CCDS14 YKPDFVGFEIPDKFVVGYALDYNEYFRDLNHVCVISETGKAKYKA
           180       190       200       210        




225 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 03:31:49 2016 done: Fri Nov  4 03:31:49 2016
 Total Scan time:  1.790 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]