FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB5281, 272 aa
  1>>>pF1KB5281 272 - 272 aa - 272 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.4485+/-0.000683; mu= 4.6544+/- 0.042
 mean_var=213.8934+/-42.554, 0's: 0 Z-trim(118.8): 23  B-trim: 0 in 0/54
 Lambda= 0.087695
 statistics sampled from 19787 (19810) to 19787 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.863), E-opt: 0.2 (0.609), width:  16
 Scan time:  3.040

The best scores are:                                      opt bits E(32554)
CCDS42920.2 OLIG1 gene_id:116448|Hs108|chr21       ( 271) 1786 237.1   1e-62


>>CCDS42920.2 OLIG1 gene_id:116448|Hs108|chr21            (271 aa)
 initn: 1522 init1: 1522 opt: 1786  Z-score: 1239.5  bits: 237.1 E(32554): 1e-62
Smith-Waterman score: 1786; 99.6% identity (99.6% similar) in 272 aa overlap (1-272:1-271)

               10        20        30        40        50        60
pF1KB5 MYYAVSQARVNAVPGTMLRPQRPGDLQLGASLYELVGYRQPPSSSSSSSTSSTSSTSSSS
       :::::::::::::::::::::::::::::::::::::::::::::::: :::::::::::
CCDS42 MYYAVSQARVNAVPGTMLRPQRPGDLQLGASLYELVGYRQPPSSSSSS-TSSTSSTSSSS
               10        20        30        40         50         

               70        80        90       100       110       120
pF1KB5 TTAPLLPKAAREKPEAPAEPPGPGPGSGAHPGGSARPDAKEEQQQQLRRKINSRERKRMQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 TTAPLLPKAAREKPEAPAEPPGPGPGSGAHPGGSARPDAKEEQQQQLRRKINSRERKRMQ
      60        70        80        90       100       110         

              130       140       150       160       170       180
pF1KB5 DLNLAMDALREVILPYSAAHCQGAPGRKLSKIATLLLARNYILLLGSSLQELRRALGEGA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 DLNLAMDALREVILPYSAAHCQGAPGRKLSKIATLLLARNYILLLGSSLQELRRALGEGA
     120       130       140       150       160       170         

              190       200       210       220       230       240
pF1KB5 GPAAPRLLLAGLPLLAAAPGSVLLAPGAVGPPDALRPAKYLSLALDEPPCGQFALPGGGA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 GPAAPRLLLAGLPLLAAAPGSVLLAPGAVGPPDALRPAKYLSLALDEPPCGQFALPGGGA
     180       190       200       210       220       230         

              250       260       270  
pF1KB5 GGPGLCTCAVCKFPHLVPASLGLAAVQAQFSK
       ::::::::::::::::::::::::::::::::
CCDS42 GGPGLCTCAVCKFPHLVPASLGLAAVQAQFSK
     240       250       260       270 




272 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 22:25:57 2016 done: Thu Nov  3 22:25:58 2016
 Total Scan time:  3.040 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]