Result of FASTA (ccds) for
pF1KB5280
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB5280, 246 aa
1>>>pF1KB5280 246 - 246 aa - 246 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.8549+/-0.000989; mu= 12.2893+/- 0.060
mean_var=80.3947+/-15.685, 0's: 0 Z-trim(104.6): 32 B-trim: 0 in 0/51
Lambda= 0.143041
statistics sampled from 7971 (7989) to 7971 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.62), E-opt: 0.2 (0.245), width: 16
Scan time: 2.170
The best scores are: opt bits E(32554)
CCDS13901.1 YWHAH gene_id:7533|Hs108|chr22 ( 246) 1571 333.8 6.7e-92
CCDS5584.1 YWHAG gene_id:7532|Hs108|chr7 ( 247) 1387 295.8 1.8e-80
CCDS6290.1 YWHAZ gene_id:7534|Hs108|chr8 ( 245) 1157 248.3 3.5e-66
CCDS13339.1 YWHAB gene_id:7529|Hs108|chr20 ( 246) 1150 246.9 9.5e-66
CCDS1666.1 YWHAQ gene_id:10971|Hs108|chr2 ( 245) 1107 238.0 4.4e-63
CCDS288.1 SFN gene_id:2810|Hs108|chr1 ( 248) 1012 218.4 3.6e-57
CCDS11001.1 YWHAE gene_id:7531|Hs108|chr17 ( 255) 986 213.0 1.5e-55
>>CCDS13901.1 YWHAH gene_id:7533|Hs108|chr22 (246 aa)
initn: 1571 init1: 1571 opt: 1571 Z-score: 1763.4 bits: 333.8 E(32554): 6.7e-92
Smith-Waterman score: 1571; 100.0% identity (100.0% similar) in 246 aa overlap (1-246:1-246)
10 20 30 40 50 60
pF1KB5 MGDREQLLQRARLAEQAERYDDMASAMKAVTELNEPLSNEDRNLLSVAYKNVVGARRSSW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MGDREQLLQRARLAEQAERYDDMASAMKAVTELNEPLSNEDRNLLSVAYKNVVGARRSSW
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 RVISSIEQKTMADGNEKKLEKVKAYREKIEKELETVCNDVLSLLDKFLIKNCNDFQYESK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 RVISSIEQKTMADGNEKKLEKVKAYREKIEKELETVCNDVLSLLDKFLIKNCNDFQYESK
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB5 VFYLKMKGDYYRYLAEVASGEKKNSVVEASEAAYKEAFEISKEQMQPTHPIRLGLALNFS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 VFYLKMKGDYYRYLAEVASGEKKNSVVEASEAAYKEAFEISKEQMQPTHPIRLGLALNFS
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB5 VFYYEIQNAPEQACLLAKQAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDQQDE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 VFYYEIQNAPEQACLLAKQAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDQQDE
190 200 210 220 230 240
pF1KB5 EAGEGN
::::::
CCDS13 EAGEGN
>>CCDS5584.1 YWHAG gene_id:7532|Hs108|chr7 (247 aa)
initn: 1387 init1: 1387 opt: 1387 Z-score: 1558.2 bits: 295.8 E(32554): 1.8e-80
Smith-Waterman score: 1387; 87.0% identity (95.9% similar) in 246 aa overlap (1-246:1-246)
10 20 30 40 50 60
pF1KB5 MGDREQLLQRARLAEQAERYDDMASAMKAVTELNEPLSNEDRNLLSVAYKNVVGARRSSW
: :::::.:.::::::::::::::.::: :::::::::::.:::::::::::::::::::
CCDS55 MVDREQLVQKARLAEQAERYDDMAAAMKNVTELNEPLSNEERNLLSVAYKNVVGARRSSW
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 RVISSIEQKTMADGNEKKLEKVKAYREKIEKELETVCNDVLSLLDKFLIKNCNDFQYESK
:::::::::: :::::::.: :.:::::::::::.::.:::::::..:::::.. :::::
CCDS55 RVISSIEQKTSADGNEKKIEMVRAYREKIEKELEAVCQDVLSLLDNYLIKNCSETQYESK
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB5 VFYLKMKGDYYRYLAEVASGEKKNSVVEASEAAYKEAFEISKEQMQPTHPIRLGLALNFS
::::::::::::::::::.:::. .:::.:: ::.:: :::::.::::::::::::::.:
CCDS55 VFYLKMKGDYYRYLAEVATGEKRATVVESSEKAYSEAHEISKEHMQPTHPIRLGLALNYS
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB5 VFYYEIQNAPEQACLLAKQAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDQQDE
:::::::::::::: ::: ::::::::::::::::::::::::::::::::::::::::.
CCDS55 VFYYEIQNAPEQACHLAKTAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDQQDD
190 200 210 220 230 240
pF1KB5 EAGEGN
..::::
CCDS55 DGGEGNN
>>CCDS6290.1 YWHAZ gene_id:7534|Hs108|chr8 (245 aa)
initn: 1019 init1: 668 opt: 1157 Z-score: 1301.7 bits: 248.3 E(32554): 3.5e-66
Smith-Waterman score: 1157; 75.5% identity (89.4% similar) in 245 aa overlap (3-245:2-242)
10 20 30 40 50 60
pF1KB5 MGDREQLLQRARLAEQAERYDDMASAMKAVTELNEPLSNEDRNLLSVAYKNVVGARRSSW
:...:.:.:.::::::::::::. ::.::: . ::::.:::::::::::::::::::
CCDS62 MDKNELVQKAKLAEQAERYDDMAACMKSVTEQGAELSNEERNLLSVAYKNVVGARRSSW
10 20 30 40 50
70 80 90 100 110 120
pF1KB5 RVISSIEQKTMADGNEKKLEKVKAYREKIEKELETVCNDVLSLLDKFLIKNCNDFQYESK
::.::::::: .: ::: . .. :::::: ::. .::::::::.:::: : . : :::
CCDS62 RVVSSIEQKT--EGAEKKQQMAREYREKIETELRDICNDVLSLLEKFLIPNAS--QAESK
60 70 80 90 100 110
130 140 150 160 170 180
pF1KB5 VFYLKMKGDYYRYLAEVASGEKKNSVVEASEAAYKEAFEISKEQMQPTHPIRLGLALNFS
::::::::::::::::::.:. :...:. :. ::.:::::::..::::::::::::::::
CCDS62 VFYLKMKGDYYRYLAEVAAGDDKKGIVDQSQQAYQEAFEISKKEMQPTHPIRLGLALNFS
120 130 140 150 160 170
190 200 210 220 230
pF1KB5 VFYYEIQNAPEQACLLAKQAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDQQ-D
:::::: :.::.:: ::: :::.::::::::.:.:::::::::::::::::::::: : :
CCDS62 VFYYEILNSPEKACSLAKTAFDEAIAELDTLSEESYKDSTLIMQLLRDNLTLWTSDTQGD
180 190 200 210 220 230
240
pF1KB5 E-EAGEGN
: :::::
CCDS62 EAEAGEGGEN
240
>>CCDS13339.1 YWHAB gene_id:7529|Hs108|chr20 (246 aa)
initn: 1003 init1: 658 opt: 1150 Z-score: 1293.9 bits: 246.9 E(32554): 9.5e-66
Smith-Waterman score: 1150; 75.5% identity (89.0% similar) in 245 aa overlap (3-245:4-244)
10 20 30 40 50
pF1KB5 MGDREQLLQRARLAEQAERYDDMASAMKAVTELNEPLSNEDRNLLSVAYKNVVGARRSS
:. .:.:.:.::::::::::::.::::::: .. ::::.::::::::::::::::::
CCDS13 MTMDKSELVQKAKLAEQAERYDDMAAAMKAVTEQGHELSNEERNLLSVAYKNVVGARRSS
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB5 WRVISSIEQKTMADGNEKKLEKVKAYREKIEKELETVCNDVLSLLDKFLIKNCNDFQYES
::::::::::: . :::: . : :::::: ::. .::::: ::::.:: : . : ::
CCDS13 WRVISSIEQKT--ERNEKKQQMGKEYREKIEAELQDICNDVLELLDKYLIPNAT--QPES
70 80 90 100 110
120 130 140 150 160 170
pF1KB5 KVFYLKMKGDYYRYLAEVASGEKKNSVVEASEAAYKEAFEISKEQMQPTHPIRLGLALNF
:::::::::::.:::.:::::..:...: :. ::.:::::::..:::::::::::::::
CCDS13 KVFYLKMKGDYFRYLSEVASGDNKQTTVSNSQQAYQEAFEISKKEMQPTHPIRLGLALNF
120 130 140 150 160 170
180 190 200 210 220 230
pF1KB5 SVFYYEIQNAPEQACLLAKQAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDQQD
::::::: :.::.:: ::: :::.::::::::::.:::::::::::::::::::::..:
CCDS13 SVFYYEILNSPEKACSLAKTAFDEAIAELDTLNEESYKDSTLIMQLLRDNLTLWTSENQG
180 190 200 210 220 230
240
pF1KB5 EE--AGEGN
.: ::::
CCDS13 DEGDAGEGEN
240
>>CCDS1666.1 YWHAQ gene_id:10971|Hs108|chr2 (245 aa)
initn: 968 init1: 647 opt: 1107 Z-score: 1245.9 bits: 238.0 E(32554): 4.4e-63
Smith-Waterman score: 1107; 71.4% identity (88.2% similar) in 245 aa overlap (3-245:2-242)
10 20 30 40 50 60
pF1KB5 MGDREQLLQRARLAEQAERYDDMASAMKAVTELNEPLSNEDRNLLSVAYKNVVGARRSSW
.. .:.:.:.::::::::::::. :::::: . ::::.:::::::::::::.:::.:
CCDS16 MEKTELIQKAKLAEQAERYDDMATCMKAVTEQGAELSNEERNLLSVAYKNVVGGRRSAW
10 20 30 40 50
70 80 90 100 110 120
pF1KB5 RVISSIEQKTMADGNEKKLEKVKAYREKIEKELETVCNDVLSLLDKFLIKNCNDFQYESK
:::::::::: : ..:::. .: ::::.:.::...:. :: ::::.:: : .. :::
CCDS16 RVISSIEQKT--DTSDKKLQLIKDYREKVESELRSICTTVLELLDKYLIANATN--PESK
60 70 80 90 100 110
130 140 150 160 170 180
pF1KB5 VFYLKMKGDYYRYLAEVASGEKKNSVVEASEAAYKEAFEISKEQMQPTHPIRLGLALNFS
::::::::::.::::::: :. ...... :..::.:::.:::..::::::::::::::::
CCDS16 VFYLKMKGDYFRYLAEVACGDDRKQTIDNSQGAYQEAFDISKKEMQPTHPIRLGLALNFS
120 130 140 150 160 170
190 200 210 220 230 240
pF1KB5 VFYYEIQNAPEQACLLAKQAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDQQDE
:::::: : :: :: ::: :::.:::::::::::::::::::::::::::::::::. :
CCDS16 VFYYEILNNPELACTLAKTAFDEAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDSAGE
180 190 200 210 220 230
pF1KB5 E--AGEGN
: :.::
CCDS16 ECDAAEGAEN
240
>>CCDS288.1 SFN gene_id:2810|Hs108|chr1 (248 aa)
initn: 981 init1: 596 opt: 1012 Z-score: 1139.9 bits: 218.4 E(32554): 3.6e-57
Smith-Waterman score: 1012; 64.5% identity (88.4% similar) in 242 aa overlap (3-244:2-241)
10 20 30 40 50 60
pF1KB5 MGDREQLLQRARLAEQAERYDDMASAMKAVTELNEPLSNEDRNLLSVAYKNVVGARRSSW
.: .:.:.:.::::::::.:::. ::...: .: :: :.:::::::::::::..:..:
CCDS28 MERASLIQKAKLAEQAERYEDMAAFMKGAVEKGEELSCEERNLLSVAYKNVVGGQRAAW
10 20 30 40 50
70 80 90 100 110 120
pF1KB5 RVISSIEQKTMADGNEKKLEKVKAYREKIEKELETVCNDVLSLLDKFLIKNCNDFQYESK
::.::::::. .:.:.: .:. ::::.: ::. ::. ::.:::. :::. .: ::.
CCDS28 RVLSSIEQKSNEEGSEEKGPEVREYREKVETELQGVCDTVLGLLDSHLIKEAGD--AESR
60 70 80 90 100 110
130 140 150 160 170 180
pF1KB5 VFYLKMKGDYYRYLAEVASGEKKNSVVEASEAAYKEAFEISKEQMQPTHPIRLGLALNFS
::::::::::::::::::.:. :. .......::.::..:::..: ::.:::::::::::
CCDS28 VFYLKMKGDYYRYLAEVATGDDKKRIIDSARSAYQEAMDISKKEMPPTNPIRLGLALNFS
120 130 140 150 160 170
190 200 210 220 230 240
pF1KB5 VFYYEIQNAPEQACLLAKQAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDQQDE
::.::: :.::.: ::: .::.:.:.: ::.::::::::::::::::::::::.:. :
CCDS28 VFHYEIANSPEEAISLAKTTFDEAMADLHTLSEDSYKDSTLIMQLLRDNLTLWTADNAGE
180 190 200 210 220 230
pF1KB5 EAGEGN
:.::
CCDS28 EGGEAPQEPQS
240
>>CCDS11001.1 YWHAE gene_id:7531|Hs108|chr17 (255 aa)
initn: 1010 init1: 579 opt: 986 Z-score: 1110.7 bits: 213.0 E(32554): 1.5e-55
Smith-Waterman score: 986; 63.8% identity (82.5% similar) in 240 aa overlap (1-240:1-238)
10 20 30 40 50 60
pF1KB5 MGDREQLLQRARLAEQAERYDDMASAMKAVTELNEPLSNEDRNLLSVAYKNVVGARRSSW
: :::.:. .:.:::::::::.:. .:: :. .. :. :.:::::::::::.::::.::
CCDS11 MDDREDLVYQAKLAEQAERYDEMVESMKKVAGMDVELTVEERNLLSVAYKNVIGARRASW
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 RVISSIEQKTMADGNEKKLEKVKAYREKIEKELETVCNDVLSLLDKFLIKNCNDFQYESK
:.::::::: :.: ::. .. ::. .: ::. .: :.:..::: :: : :::
CCDS11 RIISSIEQKEENKGGEDKLKMIREYRQMVETELKLICCDILDVLDKHLIPAANT--GESK
70 80 90 100 110
130 140 150 160 170 180
pF1KB5 VFYLKMKGDYYRYLAEVASGEKKNSVVEASEAAYKEAFEISKEQMQPTHPIRLGLALNFS
::: ::::::.::::: :.:. .. ..: : .::: : .:. .. ::::::::::::::
CCDS11 VFYYKMKGDYHRYLAEFATGNDRKEAAENSLVAYKAASDIAMTELPPTHPIRLGLALNFS
120 130 140 150 160 170
190 200 210 220 230 240
pF1KB5 VFYYEIQNAPEQACLLAKQAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDQQDE
:::::: :.:..:: ::: ::::::::::::.:.::::::::::::::::::::::.: .
CCDS11 VFYYEILNSPDRACRLAKAAFDDAIAELDTLSEESYKDSTLIMQLLRDNLTLWTSDMQGD
180 190 200 210 220 230
pF1KB5 EAGEGN
CCDS11 GEEQNKEALQDVEDENQ
240 250
246 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 16:30:24 2016 done: Thu Nov 3 16:30:24 2016
Total Scan time: 2.170 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]