FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB5275, 469 aa
  1>>>pF1KB5275 469 - 469 aa - 469 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.4912+/-0.000729; mu= 17.0191+/- 0.044
 mean_var=68.3772+/-13.372, 0's: 0 Z-trim(109.1): 9  B-trim: 11 in 1/50
 Lambda= 0.155102
 statistics sampled from 10639 (10644) to 10639 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.701), E-opt: 0.2 (0.327), width:  16
 Scan time:  3.210

The best scores are:                                      opt bits E(32554)
CCDS5477.1 POLD2 gene_id:5425|Hs108|chr7           ( 469) 3145 712.6 2.2e-205
CCDS75586.1 POLD2 gene_id:5425|Hs108|chr7          ( 504) 3145 712.6 2.4e-205


>>CCDS5477.1 POLD2 gene_id:5425|Hs108|chr7                (469 aa)
 initn: 3145 init1: 3145 opt: 3145  Z-score: 3800.6  bits: 712.6 E(32554): 2.2e-205
Smith-Waterman score: 3145; 100.0% identity (100.0% similar) in 469 aa overlap (1-469:1-469)

               10        20        30        40        50        60
pF1KB5 MFSEQAAQRAHTLLSPPSANNATFARVPVATYTNSSQPFRLGERSFSRQYAHIYATRLIQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 MFSEQAAQRAHTLLSPPSANNATFARVPVATYTNSSQPFRLGERSFSRQYAHIYATRLIQ
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 MRPFLENRAQQHWGSGVGVKKLCELQPEEKCCVVGTLFKAMPLQPSILREVSEEHNLLPQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 MRPFLENRAQQHWGSGVGVKKLCELQPEEKCCVVGTLFKAMPLQPSILREVSEEHNLLPQ
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB5 PPRSKYIHPDDELVLEDELQRIKLKGTIDVSKLVTGTVLAVFGSVRDDGKFLVEDYCFAD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 PPRSKYIHPDDELVLEDELQRIKLKGTIDVSKLVTGTVLAVFGSVRDDGKFLVEDYCFAD
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB5 LAPQKPAPPLDTDRFVLLVSGLGLGGGGGESLLGTQLLVDVVTGQLGDEGEQCSAAHVSR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 LAPQKPAPPLDTDRFVLLVSGLGLGGGGGESLLGTQLLVDVVTGQLGDEGEQCSAAHVSR
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB5 VILAGNLLSHSTQSRDSINKAKYLTKKTQAASVEAVKMLDEILLQLSASVPVDVMPGEFD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 VILAGNLLSHSTQSRDSINKAKYLTKKTQAASVEAVKMLDEILLQLSASVPVDVMPGEFD
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB5 PTNYTLPQQPLHPCMFPLATAYSTLQLVTNPYQATIDGVRFLGTSGQNVSDIFRYSSMED
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 PTNYTLPQQPLHPCMFPLATAYSTLQLVTNPYQATIDGVRFLGTSGQNVSDIFRYSSMED
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB5 HLEILEWTLRVRHISPTAPDTLGCYPFYKTDPFIFPECPHVYFCGNTPSFGSKIIRGPED
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 HLEILEWTLRVRHISPTAPDTLGCYPFYKTDPFIFPECPHVYFCGNTPSFGSKIIRGPED
              370       380       390       400       410       420

              430       440       450       460         
pF1KB5 QTVLLVTVPDFSATQTACLVNLRSLACQPISFSGFGAEDDDLGGLGLGP
       :::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 QTVLLVTVPDFSATQTACLVNLRSLACQPISFSGFGAEDDDLGGLGLGP
              430       440       450       460         

>>CCDS75586.1 POLD2 gene_id:5425|Hs108|chr7               (504 aa)
 initn: 3145 init1: 3145 opt: 3145  Z-score: 3800.2  bits: 712.6 E(32554): 2.4e-205
Smith-Waterman score: 3145; 100.0% identity (100.0% similar) in 469 aa overlap (1-469:36-504)

                                             10        20        30
pF1KB5                               MFSEQAAQRAHTLLSPPSANNATFARVPVA
                                     ::::::::::::::::::::::::::::::
CCDS75 ARGLAGCGAPRVNLLGLGEAVWTKQVRSVAMFSEQAAQRAHTLLSPPSANNATFARVPVA
          10        20        30        40        50        60     

               40        50        60        70        80        90
pF1KB5 TYTNSSQPFRLGERSFSRQYAHIYATRLIQMRPFLENRAQQHWGSGVGVKKLCELQPEEK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 TYTNSSQPFRLGERSFSRQYAHIYATRLIQMRPFLENRAQQHWGSGVGVKKLCELQPEEK
          70        80        90       100       110       120     

              100       110       120       130       140       150
pF1KB5 CCVVGTLFKAMPLQPSILREVSEEHNLLPQPPRSKYIHPDDELVLEDELQRIKLKGTIDV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 CCVVGTLFKAMPLQPSILREVSEEHNLLPQPPRSKYIHPDDELVLEDELQRIKLKGTIDV
         130       140       150       160       170       180     

              160       170       180       190       200       210
pF1KB5 SKLVTGTVLAVFGSVRDDGKFLVEDYCFADLAPQKPAPPLDTDRFVLLVSGLGLGGGGGE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 SKLVTGTVLAVFGSVRDDGKFLVEDYCFADLAPQKPAPPLDTDRFVLLVSGLGLGGGGGE
         190       200       210       220       230       240     

              220       230       240       250       260       270
pF1KB5 SLLGTQLLVDVVTGQLGDEGEQCSAAHVSRVILAGNLLSHSTQSRDSINKAKYLTKKTQA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 SLLGTQLLVDVVTGQLGDEGEQCSAAHVSRVILAGNLLSHSTQSRDSINKAKYLTKKTQA
         250       260       270       280       290       300     

              280       290       300       310       320       330
pF1KB5 ASVEAVKMLDEILLQLSASVPVDVMPGEFDPTNYTLPQQPLHPCMFPLATAYSTLQLVTN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 ASVEAVKMLDEILLQLSASVPVDVMPGEFDPTNYTLPQQPLHPCMFPLATAYSTLQLVTN
         310       320       330       340       350       360     

              340       350       360       370       380       390
pF1KB5 PYQATIDGVRFLGTSGQNVSDIFRYSSMEDHLEILEWTLRVRHISPTAPDTLGCYPFYKT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 PYQATIDGVRFLGTSGQNVSDIFRYSSMEDHLEILEWTLRVRHISPTAPDTLGCYPFYKT
         370       380       390       400       410       420     

              400       410       420       430       440       450
pF1KB5 DPFIFPECPHVYFCGNTPSFGSKIIRGPEDQTVLLVTVPDFSATQTACLVNLRSLACQPI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 DPFIFPECPHVYFCGNTPSFGSKIIRGPEDQTVLLVTVPDFSATQTACLVNLRSLACQPI
         430       440       450       460       470       480     

              460         
pF1KB5 SFSGFGAEDDDLGGLGLGP
       :::::::::::::::::::
CCDS75 SFSGFGAEDDDLGGLGLGP
         490       500    




469 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 03:31:21 2016 done: Fri Nov  4 03:31:21 2016
 Total Scan time:  3.210 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]