FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB5274, 349 aa
  1>>>pF1KB5274 349 - 349 aa - 349 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.1746+/-0.00102; mu= 4.8730+/- 0.061
 mean_var=226.7588+/-45.789, 0's: 0 Z-trim(110.5): 7  B-trim: 0 in 0/55
 Lambda= 0.085171
 statistics sampled from 11658 (11662) to 11658 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.702), E-opt: 0.2 (0.358), width:  16
 Scan time:  2.680

The best scores are:                                      opt bits E(32554)
CCDS4259.1 TAF7 gene_id:6879|Hs108|chr5            ( 349) 2260 290.4 1.5e-78
CCDS55466.1 TAF7L gene_id:54457|Hs108|chrX         ( 376)  726 102.0 8.6e-22
CCDS35347.1 TAF7L gene_id:54457|Hs108|chrX         ( 462)  726 102.1 9.9e-22


>>CCDS4259.1 TAF7 gene_id:6879|Hs108|chr5                 (349 aa)
 initn: 2260 init1: 2260 opt: 2260  Z-score: 1523.8  bits: 290.4 E(32554): 1.5e-78
Smith-Waterman score: 2260; 100.0% identity (100.0% similar) in 349 aa overlap (1-349:1-349)

               10        20        30        40        50        60
pF1KB5 MSKSKDDAPHELESQFILRLPPEYASTVRRAVQSGHVNLKDRLTIELHPDGRHGIVRVDR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 MSKSKDDAPHELESQFILRLPPEYASTVRRAVQSGHVNLKDRLTIELHPDGRHGIVRVDR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 VPLASKLVDLPCVMESLKTIDKKTFYKTADICQMLVSTVDGDLYPPVEEPVASTDPKASK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 VPLASKLVDLPCVMESLKTIDKKTFYKTADICQMLVSTVDGDLYPPVEEPVASTDPKASK
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB5 KKDKDKEKKFIWNHGITLPLKNVRKRRFRKTAKKKYIESPDVEKEVKRLLSTDAEAVSTR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 KKDKDKEKKFIWNHGITLPLKNVRKRRFRKTAKKKYIESPDVEKEVKRLLSTDAEAVSTR
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB5 WEIIAEDETKEAENQGLDISSPGMSGHRQGHDSLEHDELREIFNDLSSSSEDEDETQHQD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 WEIIAEDETKEAENQGLDISSPGMSGHRQGHDSLEHDELREIFNDLSSSSEDEDETQHQD
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB5 EEDINIIDTEEDLERQLQDKLNESDEQHQENEGTNQLVMGIQKQIDNMKGKLQETQDRAK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 EEDINIIDTEEDLERQLQDKLNESDEQHQENEGTNQLVMGIQKQIDNMKGKLQETQDRAK
              250       260       270       280       290       300

              310       320       330       340         
pF1KB5 RQEDLIMKVENLALKNRFQAVLDELKQKEDREKEQLSSLQEELESLLEK
       :::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 RQEDLIMKVENLALKNRFQAVLDELKQKEDREKEQLSSLQEELESLLEK
              310       320       330       340         

>>CCDS55466.1 TAF7L gene_id:54457|Hs108|chrX              (376 aa)
 initn: 1213 init1: 669 opt: 726  Z-score: 504.7  bits: 102.0 E(32554): 8.6e-22
Smith-Waterman score: 1288; 57.1% identity (79.1% similar) in 378 aa overlap (1-349:1-376)

               10        20        30        40        50        60
pF1KB5 MSKSKDDAPHELESQFILRLPPEYASTVRRAVQSGHVNLKDRLTIELHPDGRHGIVRVDR
       ::.:.:..: :.:.::::::: :.: :::  ..:  :..::.: :.: :::::..:.:. 
CCDS55 MSESQDEVPDEVENQFILRLPLEHACTVRNLARSQSVKMKDKLKIDLLPDGRHAVVEVED
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 VPLASKLVDLPCVMESLKTIDKKTFYKTADICQMLVSTVDGDLYPPVEEPVASTDPKASK
       ::::.::::::::.:::.:.::::::::::: :::: :.:::..   :::.:::::.  .
CCDS55 VPLAAKLVDLPCVIESLRTLDKKTFYKTADISQMLVCTADGDIHLSPEEPAASTDPNIVR
               70        80        90       100       110       120

              130       140       150                    160       
pF1KB5 KKDKDKEKKFIWNHGITLPLKNVRKRRFRKTAKK-------------KYIESPDVEKEVK
       ::.. .:.: .:.:::: :::::::.::::: ::             .::::::::.:::
CCDS55 KKERGREEKCVWKHGITPPLKNVRKKRFRKTQKKVPDVKEMEKSSFTEYIESPDVENEVK
              130       140       150       160       170       180

       170       180       190           200       210       220   
pF1KB5 RLLSTDAEAVSTRWEIIAEDETKEAENQG----LDISSPGMSGHRQGHDSLEHDELREIF
       ::: .::::::::::.:::: ::: :.::    . ::: :::.:.::: : :.: :::.:
CCDS55 RLLRSDAEAVSTRWEVIAEDGTKEIESQGSIPGFLISS-GMSSHKQGHTSSEYDMLREMF
              190       200       210        220       230         

           230             240        250            260       270 
pF1KB5 NDLSSSSED------EDETQHQDE-EDINIIDTEED-----LERQLQDKLNESDEQHQEN
       .:  :...:      ::: . .:: :: .  . :::     :::::: .. ::  :.. :
CCDS55 SDSRSNNDDDEDEDDEDEDEDEDEDEDEDKEEEEEDCSEEYLERQLQAEFIESG-QYRAN
     240       250       260       270       280       290         

             280       290       300       310       320       330 
pF1KB5 EGTNQLVMGIQKQIDNMKGKLQETQDRAKRQEDLIMKVENLALKNRFQAVLDELKQKEDR
       :::...:: :::::.. . ::.. :..:.::.:::::::::.:::.::.::..:. .: .
CCDS55 EGTSSIVMEIQKQIEKKEKKLHKIQNKAQRQKDLIMKVENLTLKNHFQSVLEQLELQEKQ
      300       310       320       330       340       350        

             340         
pF1KB5 EKEQLSSLQEELESLLEK
       ..:.: ::::.:. .:.:
CCDS55 KNEKLISLQEQLQRFLKK
      360       370      

>>CCDS35347.1 TAF7L gene_id:54457|Hs108|chrX              (462 aa)
 initn: 1213 init1: 669 opt: 726  Z-score: 503.6  bits: 102.1 E(32554): 9.9e-22
Smith-Waterman score: 1288; 57.1% identity (79.1% similar) in 378 aa overlap (1-349:87-462)

                                             10        20        30
pF1KB5                               MSKSKDDAPHELESQFILRLPPEYASTVRR
                                     ::.:.:..: :.:.::::::: :.: ::: 
CCDS35 IPADEDTQTDADSSAQAAAQAPENFQEGKDMSESQDEVPDEVENQFILRLPLEHACTVRN
         60        70        80        90       100       110      

               40        50        60        70        80        90
pF1KB5 AVQSGHVNLKDRLTIELHPDGRHGIVRVDRVPLASKLVDLPCVMESLKTIDKKTFYKTAD
        ..:  :..::.: :.: :::::..:.:. ::::.::::::::.:::.:.::::::::::
CCDS35 LARSQSVKMKDKLKIDLLPDGRHAVVEVEDVPLAAKLVDLPCVIESLRTLDKKTFYKTAD
        120       130       140       150       160       170      

              100       110       120       130       140       150
pF1KB5 ICQMLVSTVDGDLYPPVEEPVASTDPKASKKKDKDKEKKFIWNHGITLPLKNVRKRRFRK
       : :::: :.:::..   :::.:::::.  .::.. .:.: .:.:::: :::::::.::::
CCDS35 ISQMLVCTADGDIHLSPEEPAASTDPNIVRKKERGREEKCVWKHGITPPLKNVRKKRFRK
        180       190       200       210       220       230      

                           160       170       180       190       
pF1KB5 TAKK-------------KYIESPDVEKEVKRLLSTDAEAVSTRWEIIAEDETKEAENQG-
       : ::             .::::::::.:::::: .::::::::::.:::: ::: :.:: 
CCDS35 TQKKVPDVKEMEKSSFTEYIESPDVENEVKRLLRSDAEAVSTRWEVIAEDGTKEIESQGS
        240       250       260       270       280       290      

           200       210       220       230             240       
pF1KB5 ---LDISSPGMSGHRQGHDSLEHDELREIFNDLSSSSED------EDETQHQDE-EDINI
          . ::: :::.:.::: : :.: :::.:.:  :...:      ::: . .:: :: . 
CCDS35 IPGFLISS-GMSSHKQGHTSSEYDMLREMFSDSRSNNDDDEDEDDEDEDEDEDEDEDEDK
        300        310       320       330       340       350     

        250            260       270       280       290       300 
pF1KB5 IDTEED-----LERQLQDKLNESDEQHQENEGTNQLVMGIQKQIDNMKGKLQETQDRAKR
        . :::     :::::: .. ::  :.. ::::...:: :::::.. . ::.. :..:.:
CCDS35 EEEEEDCSEEYLERQLQAEFIESG-QYRANEGTSSIVMEIQKQIEKKEKKLHKIQNKAQR
         360       370        380       390       400       410    

             310       320       330       340         
pF1KB5 QEDLIMKVENLALKNRFQAVLDELKQKEDREKEQLSSLQEELESLLEK
       :.:::::::::.:::.::.::..:. .: ...:.: ::::.:. .:.:
CCDS35 QKDLIMKVENLTLKNHFQSVLEQLELQEKQKNEKLISLQEQLQRFLKK
          420       430       440       450       460  




349 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 16:29:45 2016 done: Thu Nov  3 16:29:46 2016
 Total Scan time:  2.680 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]