Result of FASTA (ccds) for
pF1KB5273
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB5273, 132 aa
1>>>pF1KB5273 132 - 132 aa - 132 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.0268+/-0.000911; mu= 11.7052+/- 0.055
mean_var=52.1211+/-10.171, 0's: 0 Z-trim(103.3): 21 B-trim: 27 in 1/51
Lambda= 0.177651
statistics sampled from 7326 (7346) to 7326 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.617), E-opt: 0.2 (0.226), width: 16
Scan time: 1.390
The best scores are: opt bits E(32554)
CCDS6229.1 PMP2 gene_id:5375|Hs108|chr8 ( 132) 838 222.6 5.7e-59
CCDS6230.1 FABP4 gene_id:2167|Hs108|chr8 ( 132) 587 158.2 1.3e-39
CCDS342.1 FABP3 gene_id:2170|Hs108|chr1 ( 133) 559 151.0 1.9e-37
CCDS47882.1 FABP12 gene_id:646486|Hs108|chr8 ( 140) 554 149.8 4.9e-37
CCDS5127.1 FABP7 gene_id:2173|Hs108|chr6 ( 132) 512 139.0 8.1e-34
CCDS6228.1 FABP5 gene_id:2171|Hs108|chr8 ( 135) 499 135.7 8.3e-33
CCDS83121.1 FABP7 gene_id:2173|Hs108|chr6 ( 166) 488 132.9 7.1e-32
CCDS10301.1 CRABP1 gene_id:1381|Hs108|chr15 ( 137) 315 88.5 1.3e-18
CCDS1152.1 CRABP2 gene_id:1382|Hs108|chr1 ( 138) 309 87.0 3.9e-18
CCDS3110.2 RBP1 gene_id:5947|Hs108|chr3 ( 197) 305 86.0 1.1e-17
CCDS109.1 RBP7 gene_id:116362|Hs108|chr1 ( 134) 301 84.9 1.6e-17
CCDS3109.1 RBP2 gene_id:5948|Hs108|chr3 ( 134) 268 76.5 5.5e-15
CCDS8574.1 RBP5 gene_id:83758|Hs108|chr12 ( 135) 265 75.7 9.4e-15
CCDS46925.1 RBP1 gene_id:5947|Hs108|chr3 ( 153) 245 70.6 3.7e-13
CCDS3712.1 FABP2 gene_id:2169|Hs108|chr4 ( 132) 243 70.1 4.6e-13
CCDS46926.1 RBP1 gene_id:5947|Hs108|chr3 ( 157) 243 70.1 5.4e-13
>>CCDS6229.1 PMP2 gene_id:5375|Hs108|chr8 (132 aa)
initn: 838 init1: 838 opt: 838 Z-score: 1172.1 bits: 222.6 E(32554): 5.7e-59
Smith-Waterman score: 838; 100.0% identity (100.0% similar) in 132 aa overlap (1-132:1-132)
10 20 30 40 50 60
pF1KB5 MSNKFLGTWKLVSSENFDDYMKALGVGLATRKLGNLAKPTVIISKKGDIITIRTESTFKN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS62 MSNKFLGTWKLVSSENFDDYMKALGVGLATRKLGNLAKPTVIISKKGDIITIRTESTFKN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 TEISFKLGQEFEETTADNRKTKSIVTLQRGSLNQVQRWDGKETTIKRKLVNGKMVAECKM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS62 TEISFKLGQEFEETTADNRKTKSIVTLQRGSLNQVQRWDGKETTIKRKLVNGKMVAECKM
70 80 90 100 110 120
130
pF1KB5 KGVVCTRIYEKV
::::::::::::
CCDS62 KGVVCTRIYEKV
130
>>CCDS6230.1 FABP4 gene_id:2167|Hs108|chr8 (132 aa)
initn: 585 init1: 571 opt: 587 Z-score: 824.5 bits: 158.2 E(32554): 1.3e-39
Smith-Waterman score: 587; 67.2% identity (88.5% similar) in 131 aa overlap (1-131:1-131)
10 20 30 40 50 60
pF1KB5 MSNKFLGTWKLVSSENFDDYMKALGVGLATRKLGNLAKPTVIISKKGDIITIRTESTFKN
: . :.:::::::::::::::: .:::.::::....:::..::: .::.:::..::::::
CCDS62 MCDAFVGTWKLVSSENFDDYMKEVGVGFATRKVAGMAKPNMIISVNGDVITIKSESTFKN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 TEISFKLGQEFEETTADNRKTKSIVTLQRGSLNQVQRWDGKETTIKRKLVNGKMVAECKM
::::: :::::.:.:::.::.:: .::. : : .::.:::: :::::: . :.:.:: :
CCDS62 TEISFILGQEFDEVTADDRKVKSTITLDGGVLVHVQKWDGKSTTIKRKREDDKLVVECVM
70 80 90 100 110 120
130
pF1KB5 KGVVCTRIYEKV
:::. ::.::.
CCDS62 KGVTSTRVYERA
130
>>CCDS342.1 FABP3 gene_id:2170|Hs108|chr1 (133 aa)
initn: 559 init1: 559 opt: 559 Z-score: 785.6 bits: 151.0 E(32554): 1.9e-37
Smith-Waterman score: 559; 63.4% identity (88.5% similar) in 131 aa overlap (1-131:1-131)
10 20 30 40 50 60
pF1KB5 MSNKFLGTWKLVSSENFDDYMKALGVGLATRKLGNLAKPTVIISKKGDIITIRTESTFKN
: . ::::::::.:.:::::::.::::.:::......:::.:: :.:::.:..:.:::::
CCDS34 MVDAFLGTWKLVDSKNFDDYMKSLGVGFATRQVASMTKPTTIIEKNGDILTLKTHSTFKN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 TEISFKLGQEFEETTADNRKTKSIVTLQRGSLNQVQRWDGKETTIKRKLVNGKMVAECKM
:::::::: ::.:::::.::.::::::. :.: ..:.:::.:::. :.:..::..
CCDS34 TEISFKLGVEFDETTADDRKVKSIVTLDGGKLVHLQKWDGQETTLVRELIDGKLILTLTH
70 80 90 100 110 120
130
pF1KB5 KGVVCTRIYEKV
.:::: :::
CCDS34 GTAVCTRTYEKEA
130
>>CCDS47882.1 FABP12 gene_id:646486|Hs108|chr8 (140 aa)
initn: 554 init1: 554 opt: 554 Z-score: 778.4 bits: 149.8 E(32554): 4.9e-37
Smith-Waterman score: 554; 65.9% identity (82.6% similar) in 132 aa overlap (1-132:1-132)
10 20 30 40 50 60
pF1KB5 MSNKFLGTWKLVSSENFDDYMKALGVGLATRKLGNLAKPTVIISKKGDIITIRTESTFKN
: ... :::: .: :: .:::: ::.: :.:::: :::::: :: ::.:::.:.: :::
CCDS47 MIDQLQGTWKSISCENSEDYMKELGIGRASRKLGRLAKPTVTISTDGDVITIKTKSIFKN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 TEISFKLGQEFEETTADNRKTKSIVTLQRGSLNQVQRWDGKETTIKRKLVNGKMVAECKM
.:::::::.:::: : ..:::: :::.. :: ::: :::::::: ::::.::::.: .
CCDS47 NEISFKLGEEFEEITPGGHKTKSKVTLDKESLIQVQDWDGKETTITRKLVDGKMVVESTV
70 80 90 100 110 120
130
pF1KB5 KGVVCTRIYEKV
..:.::: ::::
CCDS47 NSVICTRTYEKVSSNSVSNS
130 140
>>CCDS5127.1 FABP7 gene_id:2173|Hs108|chr6 (132 aa)
initn: 512 init1: 512 opt: 512 Z-score: 720.6 bits: 139.0 E(32554): 8.1e-34
Smith-Waterman score: 512; 59.5% identity (85.5% similar) in 131 aa overlap (1-131:1-131)
10 20 30 40 50 60
pF1KB5 MSNKFLGTWKLVSSENFDDYMKALGVGLATRKLGNLAKPTVIISKKGDIITIRTESTFKN
: . : .::::..:.:::.::::::::.:::..::..:::::::..:: ..::: :::::
CCDS51 MVEAFCATWKLTNSQNFDEYMKALGVGFATRQVGNVTKPTVIISQEGDKVVIRTLSTFKN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 TEISFKLGQEFEETTADNRKTKSIVTLQRGSLNQVQRWDGKETTIKRKLVNGKMVAECKM
:::::.::.::.:::::.:. ::.:.:. .: ..:.::::::.. :.. .:::: .
CCDS51 TEISFQLGEEFDETTADDRNCKSVVSLDGDKLVHIQKWDGKETNFVREIKDGKMVMTLTF
70 80 90 100 110 120
130
pF1KB5 KGVVCTRIYEKV
:: .: :::
CCDS51 GDVVAVRHYEKA
130
>>CCDS6228.1 FABP5 gene_id:2171|Hs108|chr8 (135 aa)
initn: 499 init1: 499 opt: 499 Z-score: 702.4 bits: 135.7 E(32554): 8.3e-33
Smith-Waterman score: 499; 58.7% identity (84.1% similar) in 126 aa overlap (7-132:9-134)
10 20 30 40 50
pF1KB5 MSNKFLGTWKLVSSENFDDYMKALGVGLATRKLGNLAKPTVIISKKGDIITIRTESTF
: :.::.:..::.::: ::::.: ::.: .::: ::. : .::.::::.
CCDS62 MATVQQLEGRWRLVDSKGFDEYMKELGVGIALRKMGAMAKPDCIITCDGKNLTIKTESTL
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB5 KNTEISFKLGQEFEETTADNRKTKSIVTLQRGSLNQVQRWDGKETTIKRKLVNGKMVAEC
:.:..: ::..:::::::.:::... .. :.: : :.:::::.:: ::: .::.:.::
CCDS62 KTTQFSCTLGEKFEETTADGRKTQTVCNFTDGALVQHQEWDGKESTITRKLKDGKLVVEC
70 80 90 100 110 120
120 130
pF1KB5 KMKGVVCTRIYEKV
:..:.::::::::
CCDS62 VMNNVTCTRIYEKVE
130
>>CCDS83121.1 FABP7 gene_id:2173|Hs108|chr6 (166 aa)
initn: 488 init1: 488 opt: 488 Z-score: 685.7 bits: 132.9 E(32554): 7.1e-32
Smith-Waterman score: 488; 62.6% identity (90.4% similar) in 115 aa overlap (1-115:1-115)
10 20 30 40 50 60
pF1KB5 MSNKFLGTWKLVSSENFDDYMKALGVGLATRKLGNLAKPTVIISKKGDIITIRTESTFKN
: . : .::::..:.:::.::::::::.:::..::..:::::::..:: ..::: :::::
CCDS83 MVEAFCATWKLTNSQNFDEYMKALGVGFATRQVGNVTKPTVIISQEGDKVVIRTLSTFKN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 TEISFKLGQEFEETTADNRKTKSIVTLQRGSLNQVQRWDGKETTIKRKLVNGKMVAECKM
:::::.::.::.:::::.:. ::.:.:. .: ..:.::::::.. :.. .::::
CCDS83 TEISFQLGEEFDETTADDRNCKSVVSLDGDKLVHIQKWDGKETNFVREIKDGKMVMVSND
70 80 90 100 110 120
130
pF1KB5 KGVVCTRIYEKV
CCDS83 NSPFFLVFFSSPHTSHLLPSSSLLLPFFLLPSFFNNTSLARFFNYM
130 140 150 160
>>CCDS10301.1 CRABP1 gene_id:1381|Hs108|chr15 (137 aa)
initn: 318 init1: 150 opt: 315 Z-score: 447.5 bits: 88.5 E(32554): 1.3e-18
Smith-Waterman score: 315; 43.7% identity (68.1% similar) in 135 aa overlap (1-129:1-134)
10 20 30 40 50
pF1KB5 MSNKFLGTWKLVSSENFDDYMKALGVGLATRKLGNLA--KPTVIISKKGDIITIRTESTF
: : : ::::. ::::::. .:::::. ::.. : :: : : . :: . :.: .:
CCDS10 MPN-FAGTWKMRSSENFDELLKALGVNAMLRKVAVAAASKPHVEIRQDGDQFYIKTSTTV
10 20 30 40 50
60 70 80 90 100 110
pF1KB5 KNTEISFKLGQEFEETTADNRKTKSIVTLQ-RGSLNQVQRW---DGKETTIKRKLVNGKM
..:::.::.:. ::: :.:.:: .:..: . ..... .: :: .: :.:.: ..
CCDS10 RTTEINFKVGEGFEEETVDGRKCRSLATWENENKIHCTQTLLEGDGPKTYWTRELANDEL
60 70 80 90 100 110
120 130
pF1KB5 VAECKMKGVVCTRIYEKV
. :::::::
CCDS10 ILTFGADDVVCTRIYVRE
120 130
>>CCDS1152.1 CRABP2 gene_id:1382|Hs108|chr1 (138 aa)
initn: 292 init1: 162 opt: 309 Z-score: 439.1 bits: 87.0 E(32554): 3.9e-18
Smith-Waterman score: 309; 39.7% identity (69.9% similar) in 136 aa overlap (1-129:1-135)
10 20 30 40 50
pF1KB5 MSNKFLGTWKLVSSENFDDYMKALGVGLATRKLGNLA--KPTVIISKKGDIITIRTESTF
: : : :.::.. ::::.. .:.:::.. ::.. : ::.: :...:: . :.: .:
CCDS11 MPN-FSGNWKIIRSENFEELLKVLGVNVMLRKIAVAAASKPAVEIKQEGDTFYIKTSTTV
10 20 30 40 50
60 70 80 90 100 110
pF1KB5 KNTEISFKLGQEFEETTADNRKTKSIVTLQRGSL----NQVQRWDGKETTIKRKLVN-GK
..:::.::.:.:::: :.:.: ::.: . . ... . .: .:. :.:.: :.
CCDS11 RTTEINFKVGEEFEEQTVDGRPCKSLVKWESENKMVCEQKLLKGEGPKTSWTRELTNDGE
60 70 80 90 100 110
120 130
pF1KB5 MVAECKMKGVVCTRIYEKV
.. :::::.:
CCDS11 LILTMTADDVVCTRVYVRE
120 130
>>CCDS3110.2 RBP1 gene_id:5947|Hs108|chr3 (197 aa)
initn: 247 init1: 230 opt: 305 Z-score: 431.1 bits: 86.0 E(32554): 1.1e-17
Smith-Waterman score: 305; 39.3% identity (68.1% similar) in 135 aa overlap (1-132:63-196)
10 20 30
pF1KB5 MSNKFLGTWKLVSSENFDDYMKALGVGLAT
: : : ::.. .:::..:..:: :..:
CCDS31 HHPRSTGSRCPGSLQPSRPLVANWLQSLPEMPVDFTGYWKMLVNENFEEYLRALDVNVAL
40 50 60 70 80 90
40 50 60 70 80
pF1KB5 RKLGNLAKPTVIISKKGDIITIRTESTFKNTEISFKLGQEFEE--TTADNRKTKSIVTLQ
::..:: :: : . :: . ::: :::.: ..:..:.:::: : :.:: . :. .
CCDS31 RKIANLLKPDKEIVQDGDHMIIRTLSTFRNYIMDFQVGKEFEEDLTGIDDRKCMTTVSWD
100 110 120 130 140 150
90 100 110 120 130
pF1KB5 RGSLNQVQRWDGKETTIKRKLVNG-KMVAECKMKGVVCTRIYEKV
.:. ::. . :: . ..: .. : ...:::: ....::
CCDS31 GDKLQCVQKGE-KEGRGWTQWIEGDELHLEMRVEGVVCKQVFKKVQ
160 170 180 190
132 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 12:23:01 2016 done: Sat Nov 5 12:23:01 2016
Total Scan time: 1.390 Total Display time: -0.020
Function used was FASTA [36.3.4 Apr, 2011]