FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB5268, 368 aa
  1>>>pF1KB5268 368 - 368 aa - 368 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.7766+/-0.000697; mu= 13.8213+/- 0.043
 mean_var=192.8662+/-45.997, 0's: 0 Z-trim(116.6): 32  B-trim: 956 in 1/51
 Lambda= 0.092352
 statistics sampled from 17247 (17280) to 17247 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.809), E-opt: 0.2 (0.531), width:  16
 Scan time:  3.850

The best scores are:                                      opt bits E(32554)
CCDS2838.1 GPR62 gene_id:118442|Hs108|chr3         ( 368) 2464 339.9 2.1e-93


>>CCDS2838.1 GPR62 gene_id:118442|Hs108|chr3              (368 aa)
 initn: 2464 init1: 2464 opt: 2464  Z-score: 1790.4  bits: 339.9 E(32554): 2.1e-93
Smith-Waterman score: 2464; 99.5% identity (99.7% similar) in 368 aa overlap (1-368:1-368)

               10        20        30        40        50        60
pF1KB5 MANSTGLNASEVAGSLGLILAAVVEVGALLGNGALLVVVLRTPGLRDALYLAHLCVVDLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS28 MANSTGLNASEVAGSLGLILAAVVEVGALLGNGALLVVVLRTPGLRDALYLAHLCVVDLL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 AAASIMPLGLLAAPPPGLGRVRLGPAPCRAARFLSAALLPACTLGVAALGLARYRLIVHP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS28 AAASIMPLGLLAAPPPGLGRVRLGPAPCRAARFLSAALLPACTLGVAALGLARYRLIVHP
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB5 LRPGSRPPPVLVLTAVWAAAGLLGALSLLGPPPAPPPAPARCSVLAGGLGPFRPLWALLA
       :::::::::::::::::::::::::::::: :::::::::::::::::::::::::::::
CCDS28 LRPGSRPPPVLVLTAVWAAAGLLGALSLLGTPPAPPPAPARCSVLAGGLGPFRPLWALLA
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB5 FALPALLLLGAYGGIFVVARRAALRPPRPARGSRLRSDSLDSRLSILPPLRPRLPGGKAA
       :::::::::::::::::::::::::::::::::::.::::::::::::::::::::::::
CCDS28 FALPALLLLGAYGGIFVVARRAALRPPRPARGSRLHSDSLDSRLSILPPLRPRLPGGKAA
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB5 LAPALAVGQFAACWLPYGCACLAPAARAAEAEAAVTWVAYSAFAAHPFLYGLLQRPVRLA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS28 LAPALAVGQFAACWLPYGCACLAPAARAAEAEAAVTWVAYSAFAAHPFLYGLLQRPVRLA
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB5 LGRLSRRALPGPVRACTPQAWHPRALLQCLQRPPEGPAVGPSEAPEQTPELAGGRSPAYQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS28 LGRLSRRALPGPVRACTPQAWHPRALLQCLQRPPEGPAVGPSEAPEQTPELAGGRSPAYQ
              310       320       330       340       350       360

               
pF1KB5 GPPESSLS
       ::::::::
CCDS28 GPPESSLS
               




368 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 16:29:10 2016 done: Thu Nov  3 16:29:10 2016
 Total Scan time:  3.850 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]