Result of FASTA (omim) for
pF1KB5266
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB5266, 350 aa
1>>>pF1KB5266 350 - 350 aa - 350 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.7057+/-0.000511; mu= 8.9299+/- 0.031
mean_var=144.1687+/-31.013, 0's: 0 Z-trim(113.0): 247 B-trim: 1679 in 2/51
Lambda= 0.106817
statistics sampled from 21777 (22166) to 21777 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.636), E-opt: 0.2 (0.26), width: 16
Scan time: 7.010
The best scores are: opt bits E(85289)
NP_009109 (OMIM: 605986) serine-threonine kinase r ( 350) 2352 374.7 1.7e-103
XP_005253351 (OMIM: 605986) PREDICTED: serine-thre ( 256) 1706 275.0 1.2e-73
NP_001155052 (OMIM: 614783,614813) POC1 centriolar ( 359) 342 65.0 3e-10
NP_056241 (OMIM: 614783,614813) POC1 centriolar pr ( 407) 342 65.0 3.3e-10
NP_758440 (OMIM: 614784,615973) POC1 centriolar pr ( 478) 341 64.9 4.1e-10
XP_016861593 (OMIM: 614783,614813) PREDICTED: POC1 ( 321) 337 64.1 4.7e-10
NP_001155053 (OMIM: 614783,614813) POC1 centriolar ( 369) 337 64.2 5.2e-10
XP_011531864 (OMIM: 614783,614813) PREDICTED: POC1 ( 300) 327 62.6 1.3e-09
XP_011531863 (OMIM: 614783,614813) PREDICTED: POC1 ( 326) 327 62.6 1.4e-09
XP_011531862 (OMIM: 614783,614813) PREDICTED: POC1 ( 374) 327 62.7 1.5e-09
NP_001186706 (OMIM: 614784,615973) POC1 centriolar ( 436) 324 62.3 2.3e-09
NP_008882 (OMIM: 601787) transcription initiation ( 800) 314 61.0 1.1e-08
XP_016860389 (OMIM: 612173) PREDICTED: sperm-assoc ( 323) 299 58.3 2.7e-08
XP_011510137 (OMIM: 612173) PREDICTED: sperm-assoc ( 323) 299 58.3 2.7e-08
XP_016860391 (OMIM: 612173) PREDICTED: sperm-assoc ( 323) 299 58.3 2.7e-08
XP_016860390 (OMIM: 612173) PREDICTED: sperm-assoc ( 323) 299 58.3 2.7e-08
XP_016860387 (OMIM: 612173) PREDICTED: sperm-assoc ( 390) 299 58.4 3.1e-08
XP_016860386 (OMIM: 612173) PREDICTED: sperm-assoc ( 512) 299 58.5 3.8e-08
XP_016860385 (OMIM: 612173) PREDICTED: sperm-assoc ( 512) 299 58.5 3.8e-08
XP_011510124 (OMIM: 612173) PREDICTED: sperm-assoc ( 528) 299 58.5 3.9e-08
XP_011510125 (OMIM: 612173) PREDICTED: sperm-assoc ( 528) 299 58.5 3.9e-08
XP_011510123 (OMIM: 612173) PREDICTED: sperm-assoc ( 537) 299 58.5 3.9e-08
XP_011510121 (OMIM: 612173) PREDICTED: sperm-assoc ( 577) 299 58.5 4.1e-08
XP_011510116 (OMIM: 612173) PREDICTED: sperm-assoc ( 600) 299 58.5 4.3e-08
NP_078808 (OMIM: 612173) sperm-associated antigen ( 631) 299 58.6 4.4e-08
NP_942593 (OMIM: 610767,611081) autophagy-related ( 444) 246 50.3 9.9e-06
XP_005246143 (OMIM: 610767,611081) PREDICTED: auto ( 463) 246 50.3 1e-05
XP_005246141 (OMIM: 610767,611081) PREDICTED: auto ( 480) 246 50.3 1e-05
NP_001177196 (OMIM: 610767,611081) autophagy-relat ( 491) 246 50.3 1.1e-05
NP_001177195 (OMIM: 610767,611081) autophagy-relat ( 523) 246 50.3 1.1e-05
XP_006712671 (OMIM: 610767,611081) PREDICTED: auto ( 540) 246 50.3 1.1e-05
NP_060444 (OMIM: 610767,611081) autophagy-related ( 588) 246 50.4 1.2e-05
NP_110430 (OMIM: 610767,611081) autophagy-related ( 607) 246 50.4 1.2e-05
XP_005246139 (OMIM: 610767,611081) PREDICTED: auto ( 624) 246 50.4 1.3e-05
XP_016879716 (OMIM: 609804) PREDICTED: cilia- and ( 531) 243 49.9 1.5e-05
NP_001074025 (OMIM: 609804) cilia- and flagella-as ( 552) 243 49.9 1.6e-05
NP_659491 (OMIM: 609804) cilia- and flagella-assoc ( 620) 243 49.9 1.7e-05
XP_011510118 (OMIM: 612173) PREDICTED: sperm-assoc ( 592) 240 49.4 2.3e-05
XP_011510120 (OMIM: 612173) PREDICTED: sperm-assoc ( 577) 237 49.0 3.1e-05
XP_011510119 (OMIM: 612173) PREDICTED: sperm-assoc ( 582) 237 49.0 3.1e-05
XP_011510117 (OMIM: 612173) PREDICTED: sperm-assoc ( 592) 237 49.0 3.2e-05
XP_016878352 (OMIM: 602703,616212) PREDICTED: kata ( 655) 233 48.4 5.2e-05
NP_005877 (OMIM: 602703,616212) katanin p80 WD40 r ( 655) 233 48.4 5.2e-05
XP_016878353 (OMIM: 602703,616212) PREDICTED: kata ( 655) 233 48.4 5.2e-05
XP_006721186 (OMIM: 602703,616212) PREDICTED: kata ( 658) 233 48.4 5.2e-05
XP_005255829 (OMIM: 602703,616212) PREDICTED: kata ( 672) 233 48.4 5.3e-05
XP_016878351 (OMIM: 602703,616212) PREDICTED: kata ( 672) 233 48.4 5.3e-05
XP_016878350 (OMIM: 602703,616212) PREDICTED: kata ( 672) 233 48.4 5.3e-05
XP_006721184 (OMIM: 602703,616212) PREDICTED: kata ( 675) 233 48.4 5.3e-05
XP_006721185 (OMIM: 602703,616212) PREDICTED: kata ( 675) 233 48.4 5.3e-05
>>NP_009109 (OMIM: 605986) serine-threonine kinase recep (350 aa)
initn: 2352 init1: 2352 opt: 2352 Z-score: 1979.2 bits: 374.7 E(85289): 1.7e-103
Smith-Waterman score: 2352; 100.0% identity (100.0% similar) in 350 aa overlap (1-350:1-350)
10 20 30 40 50 60
pF1KB5 MAMRQTPLTCSGHTRPVVDLAFSGITPYGYFLISACKDGKPMLRQGDTGDWIGTFLGHKG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_009 MAMRQTPLTCSGHTRPVVDLAFSGITPYGYFLISACKDGKPMLRQGDTGDWIGTFLGHKG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 AVWGATLNKDATKAATAAADFTAKVWDAVSGDELMTLAHKHIVKTVDFTQDSNYLLTGGQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_009 AVWGATLNKDATKAATAAADFTAKVWDAVSGDELMTLAHKHIVKTVDFTQDSNYLLTGGQ
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB5 DKLLRIYDLNKPEAEPKEISGHTSGIKKALWCSEDKQILSADDKTVRLWDHATMTEVKSL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_009 DKLLRIYDLNKPEAEPKEISGHTSGIKKALWCSEDKQILSADDKTVRLWDHATMTEVKSL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB5 NFNMSVSSMEYIPEGEILVITYGRSIAFHSAVSLDPIKSFEAPATINSASLHPEKEFLVA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_009 NFNMSVSSMEYIPEGEILVITYGRSIAFHSAVSLDPIKSFEAPATINSASLHPEKEFLVA
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB5 GGEDFKLYKYDYNSGEELESYKGHFGPIHCVRFSPDGELYASGSEDGTLRLWQTVVGKTY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_009 GGEDFKLYKYDYNSGEELESYKGHFGPIHCVRFSPDGELYASGSEDGTLRLWQTVVGKTY
250 260 270 280 290 300
310 320 330 340 350
pF1KB5 GLWKCVLPEEDSGELAKPKIGFPETTEEELEEIASENSDCIFPSAPDVKA
::::::::::::::::::::::::::::::::::::::::::::::::::
NP_009 GLWKCVLPEEDSGELAKPKIGFPETTEEELEEIASENSDCIFPSAPDVKA
310 320 330 340 350
>>XP_005253351 (OMIM: 605986) PREDICTED: serine-threonin (256 aa)
initn: 1706 init1: 1706 opt: 1706 Z-score: 1442.9 bits: 275.0 E(85289): 1.2e-73
Smith-Waterman score: 1706; 100.0% identity (100.0% similar) in 256 aa overlap (95-350:1-256)
70 80 90 100 110 120
pF1KB5 ATLNKDATKAATAAADFTAKVWDAVSGDELMTLAHKHIVKTVDFTQDSNYLLTGGQDKLL
::::::::::::::::::::::::::::::
XP_005 MTLAHKHIVKTVDFTQDSNYLLTGGQDKLL
10 20 30
130 140 150 160 170 180
pF1KB5 RIYDLNKPEAEPKEISGHTSGIKKALWCSEDKQILSADDKTVRLWDHATMTEVKSLNFNM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 RIYDLNKPEAEPKEISGHTSGIKKALWCSEDKQILSADDKTVRLWDHATMTEVKSLNFNM
40 50 60 70 80 90
190 200 210 220 230 240
pF1KB5 SVSSMEYIPEGEILVITYGRSIAFHSAVSLDPIKSFEAPATINSASLHPEKEFLVAGGED
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 SVSSMEYIPEGEILVITYGRSIAFHSAVSLDPIKSFEAPATINSASLHPEKEFLVAGGED
100 110 120 130 140 150
250 260 270 280 290 300
pF1KB5 FKLYKYDYNSGEELESYKGHFGPIHCVRFSPDGELYASGSEDGTLRLWQTVVGKTYGLWK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 FKLYKYDYNSGEELESYKGHFGPIHCVRFSPDGELYASGSEDGTLRLWQTVVGKTYGLWK
160 170 180 190 200 210
310 320 330 340 350
pF1KB5 CVLPEEDSGELAKPKIGFPETTEEELEEIASENSDCIFPSAPDVKA
::::::::::::::::::::::::::::::::::::::::::::::
XP_005 CVLPEEDSGELAKPKIGFPETTEEELEEIASENSDCIFPSAPDVKA
220 230 240 250
>>NP_001155052 (OMIM: 614783,614813) POC1 centriolar pro (359 aa)
initn: 317 init1: 127 opt: 342 Z-score: 305.0 bits: 65.0 E(85289): 3e-10
Smith-Waterman score: 342; 26.4% identity (57.3% similar) in 288 aa overlap (12-294:17-300)
10 20 30 40 50
pF1KB5 MAMRQTPLTCSGHTRPVVDLAFSGITPYGYFLISACKDGKPMLRQGDTGDWIGTF
:: :. . :: : : :. :. :. . . :
NP_001 MAAPCAEDPSLERHFKGHRDAVTCVDFSINTKQ---LASGSMDSCLMVWHMKPQSRAYRF
10 20 30 40 50
60 70 80 90 100 110
pF1KB5 LGHKGAVWGATLNKDATKAATAAADFTAKVW-DAVSGDELMTLAHKHIVKTVDFTQDSNY
::: :: .... .. :... : :...: :.:. . :: :..: : .:..
NP_001 TGHKDAVTCVNFSPSGHLLASGSRDKTVRIWVPNVKGESTVFRAHTATVRSVHFCSDGQS
60 70 80 90 100 110
120 130 140 150 160 170
pF1KB5 LLTGGQDKLLRIYDLNKPEAEPKEISGHTSGIKKALWCSEDKQILSA-DDKTVRLWDHAT
..:...:: .... .. . . .: : . .. : . . . :.:: :::::.:::...
NP_001 FVTASDDKTVKVWATHRQKFLFS-LSQHINWVRCAKFSPDGRLIVSASDDKTVKLWDKSS
120 130 140 150 160 170
180 190 200 210 220 230
pF1KB5 MTEVKSLNFNMS-VSSMEYIPEGE-ILVITYGRSIAFHSAVSLDPIKSFEA-PATINSAS
:.: . . :. ... : : : . . .. .. . .. .. :..:. :
NP_001 RECVHSYCEHGGFVTYVDFHPSGTCIAAAGMDNTVKVWDVRTHRLLQHYQLHSAAVNGLS
180 190 200 210 220 230
240 250 260 270 280 290
pF1KB5 LHPEKEFLVAGGEDFKLYKYDYNSGEELESYKGHFGPIHCVRFSPDGELYASGSEDGTLR
.:: ..:.... : : : :. : . .:: :: : :: :: .:::. : .
NP_001 FHPSGNYLITASSDSTLKILDLMEGRLLYTLHGHQGPATTVAFSRTGEYFASGGSDEQVM
240 250 260 270 280 290
300 310 320 330 340 350
pF1KB5 LWQTVVGKTYGLWKCVLPEEDSGELAKPKIGFPETTEEELEEIASENSDCIFPSAPDVKA
.:..
NP_001 VWKSNFDIVDHGEVTKVPRPPATLASSMGNLTVSILEQRLTLTEDKLKQCLENQQLIMQR
300 310 320 330 340 350
>>NP_056241 (OMIM: 614783,614813) POC1 centriolar protei (407 aa)
initn: 317 init1: 127 opt: 342 Z-score: 304.3 bits: 65.0 E(85289): 3.3e-10
Smith-Waterman score: 342; 26.4% identity (57.3% similar) in 288 aa overlap (12-294:17-300)
10 20 30 40 50
pF1KB5 MAMRQTPLTCSGHTRPVVDLAFSGITPYGYFLISACKDGKPMLRQGDTGDWIGTF
:: :. . :: : : :. :. :. . . :
NP_056 MAAPCAEDPSLERHFKGHRDAVTCVDFSINTKQ---LASGSMDSCLMVWHMKPQSRAYRF
10 20 30 40 50
60 70 80 90 100 110
pF1KB5 LGHKGAVWGATLNKDATKAATAAADFTAKVW-DAVSGDELMTLAHKHIVKTVDFTQDSNY
::: :: .... .. :... : :...: :.:. . :: :..: : .:..
NP_056 TGHKDAVTCVNFSPSGHLLASGSRDKTVRIWVPNVKGESTVFRAHTATVRSVHFCSDGQS
60 70 80 90 100 110
120 130 140 150 160 170
pF1KB5 LLTGGQDKLLRIYDLNKPEAEPKEISGHTSGIKKALWCSEDKQILSA-DDKTVRLWDHAT
..:...:: .... .. . . .: : . .. : . . . :.:: :::::.:::...
NP_056 FVTASDDKTVKVWATHRQKFLFS-LSQHINWVRCAKFSPDGRLIVSASDDKTVKLWDKSS
120 130 140 150 160 170
180 190 200 210 220 230
pF1KB5 MTEVKSLNFNMS-VSSMEYIPEGE-ILVITYGRSIAFHSAVSLDPIKSFEA-PATINSAS
:.: . . :. ... : : : . . .. .. . .. .. :..:. :
NP_056 RECVHSYCEHGGFVTYVDFHPSGTCIAAAGMDNTVKVWDVRTHRLLQHYQLHSAAVNGLS
180 190 200 210 220 230
240 250 260 270 280 290
pF1KB5 LHPEKEFLVAGGEDFKLYKYDYNSGEELESYKGHFGPIHCVRFSPDGELYASGSEDGTLR
.:: ..:.... : : : :. : . .:: :: : :: :: .:::. : .
NP_056 FHPSGNYLITASSDSTLKILDLMEGRLLYTLHGHQGPATTVAFSRTGEYFASGGSDEQVM
240 250 260 270 280 290
300 310 320 330 340 350
pF1KB5 LWQTVVGKTYGLWKCVLPEEDSGELAKPKIGFPETTEEELEEIASENSDCIFPSAPDVKA
.:..
NP_056 VWKSNFDIVDHGEVTKVPRPPATLASSMGNLPEVDFPVPPGRGRSVESVQSQPQEPVSVP
300 310 320 330 340 350
>>NP_758440 (OMIM: 614784,615973) POC1 centriolar protei (478 aa)
initn: 382 init1: 161 opt: 341 Z-score: 302.6 bits: 64.9 E(85289): 4.1e-10
Smith-Waterman score: 341; 25.9% identity (57.6% similar) in 290 aa overlap (12-294:16-299)
10 20 30 40 50
pF1KB5 MAMRQTPLTCSGHTRPVVDLAFSGITPYGYFLISACKDGKPMLRQGDTGDWIGTFL
:: ...: .: : : : .: : :: . ..
NP_758 MASATEDPVLERYFKGHKAAITSLDLS---PNGKQLATASWDTFLMLWNFKPHARAYRYV
10 20 30 40 50
60 70 80 90 100 110
pF1KB5 GHKGAVWGATLNKDATKAATAAADFTAKVWDAVSGDELMTL-AHKHIVKTVDFTQDSNYL
::: .: .. .. .. :.:. : :...: . .. . :: :..:::. :...:
NP_758 GHKDVVTSVQFSPHGNLLASASRDRTVRLWIPDKRGKFSEFKAHTAPVRSVDFSADGQFL
60 70 80 90 100 110
120 130 140 150 160 170
pF1KB5 LTGGQDKLLRIYDLNKPEAEPKEISGHTSGIKKALWCSEDKQILS-ADDKTVRLWDHATM
:...:: ...... . . . :: .. : . . . :.: ..:::...:: ..
NP_758 ATASEDKSIKVWSMYR-QRFLYSLYRHTHWVRCAKFSPDGRLIVSCSEDKTIKIWDTTNK
120 130 140 150 160 170
180 190 200 210 220
pF1KB5 TEVKSLNFNMSVSSMEYI---PEGEILVITYGRSIAFHSAVSLDPI-KSFEAPAT-INSA
:. ::. ::. ... : : .. . . . . : .. . . ... . .:
NP_758 QCVN--NFSDSVGFANFVDFNPSGTCIASAGSDQTVKVWDVRVNKLLQHYQVHSGGVNCI
180 190 200 210 220 230
230 240 250 260 270 280
pF1KB5 SLHPEKEFLVAGGEDFKLYKYDYNSGEELESYKGHFGPIHCVRFSPDGELYASGSEDGTL
:.:: ..:.... : : : :. . . .:: ::. : :: :::.:::. : .
NP_758 SFHPSGNYLITASSDGTLKILDLLEGRLIYTLQGHTGPVFTVSFSKGGELFASGGADTQV
240 250 260 270 280 290
290 300 310 320 330 340
pF1KB5 RLWQTVVGKTYGLWKCVLPEEDSGELAKPKIGFPETTEEELEEIASENSDCIFPSAPDVK
::.:
NP_758 LLWRTNFDELHCKGLTKRNLKRLHFDSPPHLLDIYPRTPHPHEEKVETVEINPKLEVIDL
300 310 320 330 340 350
>>XP_016861593 (OMIM: 614783,614813) PREDICTED: POC1 cen (321 aa)
initn: 264 init1: 127 opt: 337 Z-score: 301.5 bits: 64.1 E(85289): 4.7e-10
Smith-Waterman score: 337; 26.9% identity (60.4% similar) in 245 aa overlap (55-294:19-262)
30 40 50 60 70 80
pF1KB5 ITPYGYFLISACKDGKPMLRQGDTGDWIGTFLGHKGAVWGATLNKDATKAATAAADFTAK
: ::: :: .... .. :... : :..
XP_016 MDSCLMVWHMKPQSRAYRFTGHKDAVTCVNFSPSGHLLASGSRDKTVR
10 20 30 40
90 100 110 120 130 140
pF1KB5 VW-DAVSGDELMTLAHKHIVKTVDFTQDSNYLLTGGQDKLLRIYDLNKPEAEPKEISGHT
.: :.:. . :: :..: : .:.. ..:...:: .... .. . . .: :
XP_016 IWVPNVKGESTVFRAHTATVRSVHFCSDGQSFVTASDDKTVKVWATHRQKFLFS-LSQHI
50 60 70 80 90 100
150 160 170 180 190 200
pF1KB5 SGIKKALWCSEDKQILSA-DDKTVRLWDHATMTEVKSLNFNMS-VSSMEYIPEGE-ILVI
. .. : . . . :.:: :::::.:::... :.: . . :. ... : : : .
XP_016 NWVRCAKFSPDGRLIVSASDDKTVKLWDKSSRECVHSYCEHGGFVTYVDFHPSGTCIAAA
110 120 130 140 150 160
210 220 230 240 250
pF1KB5 TYGRSIAFHSAVSLDPIKSFEA-PATINSASLHPEKEFLVAGGEDFKLYKYDYNSGEELE
. .. .. . .. .. :..:. :.:: ..:.... : : : :. :
XP_016 GMDNTVKVWDVRTHRLLQHYQLHSAAVNGLSFHPSGNYLITASSDSTLKILDLMEGRLLY
170 180 190 200 210 220
260 270 280 290 300 310
pF1KB5 SYKGHFGPIHCVRFSPDGELYASGSEDGTLRLWQTVVGKTYGLWKCVLPEEDSGELAKPK
. .:: :: : :: :: .:::. : . .:..
XP_016 TLHGHQGPATTVAFSRTGEYFASGGSDEQVMVWKSNFDIVDHGEVTKVPRPPATLASSMG
230 240 250 260 270 280
320 330 340 350
pF1KB5 IGFPETTEEELEEIASENSDCIFPSAPDVKA
XP_016 NLTVSILEQRLTLTEDKLKQCLENQQLIMQRATP
290 300 310 320
>>NP_001155053 (OMIM: 614783,614813) POC1 centriolar pro (369 aa)
initn: 264 init1: 127 opt: 337 Z-score: 300.7 bits: 64.2 E(85289): 5.2e-10
Smith-Waterman score: 337; 26.9% identity (60.4% similar) in 245 aa overlap (55-294:19-262)
30 40 50 60 70 80
pF1KB5 ITPYGYFLISACKDGKPMLRQGDTGDWIGTFLGHKGAVWGATLNKDATKAATAAADFTAK
: ::: :: .... .. :... : :..
NP_001 MDSCLMVWHMKPQSRAYRFTGHKDAVTCVNFSPSGHLLASGSRDKTVR
10 20 30 40
90 100 110 120 130 140
pF1KB5 VW-DAVSGDELMTLAHKHIVKTVDFTQDSNYLLTGGQDKLLRIYDLNKPEAEPKEISGHT
.: :.:. . :: :..: : .:.. ..:...:: .... .. . . .: :
NP_001 IWVPNVKGESTVFRAHTATVRSVHFCSDGQSFVTASDDKTVKVWATHRQKFLFS-LSQHI
50 60 70 80 90 100
150 160 170 180 190 200
pF1KB5 SGIKKALWCSEDKQILSA-DDKTVRLWDHATMTEVKSLNFNMS-VSSMEYIPEGE-ILVI
. .. : . . . :.:: :::::.:::... :.: . . :. ... : : : .
NP_001 NWVRCAKFSPDGRLIVSASDDKTVKLWDKSSRECVHSYCEHGGFVTYVDFHPSGTCIAAA
110 120 130 140 150 160
210 220 230 240 250
pF1KB5 TYGRSIAFHSAVSLDPIKSFEA-PATINSASLHPEKEFLVAGGEDFKLYKYDYNSGEELE
. .. .. . .. .. :..:. :.:: ..:.... : : : :. :
NP_001 GMDNTVKVWDVRTHRLLQHYQLHSAAVNGLSFHPSGNYLITASSDSTLKILDLMEGRLLY
170 180 190 200 210 220
260 270 280 290 300 310
pF1KB5 SYKGHFGPIHCVRFSPDGELYASGSEDGTLRLWQTVVGKTYGLWKCVLPEEDSGELAKPK
. .:: :: : :: :: .:::. : . .:..
NP_001 TLHGHQGPATTVAFSRTGEYFASGGSDEQVMVWKSNFDIVDHGEVTKVPRPPATLASSMG
230 240 250 260 270 280
320 330 340 350
pF1KB5 IGFPETTEEELEEIASENSDCIFPSAPDVKA
NP_001 NLPEVDFPVPPGRGRSVESVQSQPQEPVSVPQTLTSTLEHIVGQLDVLTQTVSILEQRLT
290 300 310 320 330 340
>>XP_011531864 (OMIM: 614783,614813) PREDICTED: POC1 cen (300 aa)
initn: 317 init1: 127 opt: 327 Z-score: 293.6 bits: 62.6 E(85289): 1.3e-09
Smith-Waterman score: 327; 26.8% identity (57.1% similar) in 280 aa overlap (12-286:17-292)
10 20 30 40 50
pF1KB5 MAMRQTPLTCSGHTRPVVDLAFSGITPYGYFLISACKDGKPMLRQGDTGDWIGTF
:: :. . :: : : :. :. :. . . :
XP_011 MAAPCAEDPSLERHFKGHRDAVTCVDFSINTKQ---LASGSMDSCLMVWHMKPQSRAYRF
10 20 30 40 50
60 70 80 90 100 110
pF1KB5 LGHKGAVWGATLNKDATKAATAAADFTAKVW-DAVSGDELMTLAHKHIVKTVDFTQDSNY
::: :: .... .. :... : :...: :.:. . :: :..: : .:..
XP_011 TGHKDAVTCVNFSPSGHLLASGSRDKTVRIWVPNVKGESTVFRAHTATVRSVHFCSDGQS
60 70 80 90 100 110
120 130 140 150 160 170
pF1KB5 LLTGGQDKLLRIYDLNKPEAEPKEISGHTSGIKKALWCSEDKQILSA-DDKTVRLWDHAT
..:...:: .... .. . . .: : . .. : . . . :.:: :::::.:::...
XP_011 FVTASDDKTVKVWATHRQKFLFS-LSQHINWVRCAKFSPDGRLIVSASDDKTVKLWDKSS
120 130 140 150 160 170
180 190 200 210 220 230
pF1KB5 MTEVKSLNFNMS-VSSMEYIPEGE-ILVITYGRSIAFHSAVSLDPIKSFEA-PATINSAS
:.: . . :. ... : : : . . .. .. . .. .. :..:. :
XP_011 RECVHSYCEHGGFVTYVDFHPSGTCIAAAGMDNTVKVWDVRTHRLLQHYQLHSAAVNGLS
180 190 200 210 220 230
240 250 260 270 280 290
pF1KB5 LHPEKEFLVAGGEDFKLYKYDYNSGEELESYKGHFGPIHCVRFSPDGELYASGSEDGTLR
.:: ..:.... : : : :. : . .:: :: : :: :: .:::. :
XP_011 FHPSGNYLITASSDSTLKILDLMEGRLLYTLHGHQGPATTVAFSRTGEYFASGGSDEQVI
240 250 260 270 280 290
300 310 320 330 340 350
pF1KB5 LWQTVVGKTYGLWKCVLPEEDSGELAKPKIGFPETTEEELEEIASENSDCIFPSAPDVKA
XP_011 CARP
300
>>XP_011531863 (OMIM: 614783,614813) PREDICTED: POC1 cen (326 aa)
initn: 317 init1: 127 opt: 327 Z-score: 293.1 bits: 62.6 E(85289): 1.4e-09
Smith-Waterman score: 327; 26.8% identity (57.1% similar) in 280 aa overlap (12-286:17-292)
10 20 30 40 50
pF1KB5 MAMRQTPLTCSGHTRPVVDLAFSGITPYGYFLISACKDGKPMLRQGDTGDWIGTF
:: :. . :: : : :. :. :. . . :
XP_011 MAAPCAEDPSLERHFKGHRDAVTCVDFSINTKQ---LASGSMDSCLMVWHMKPQSRAYRF
10 20 30 40 50
60 70 80 90 100 110
pF1KB5 LGHKGAVWGATLNKDATKAATAAADFTAKVW-DAVSGDELMTLAHKHIVKTVDFTQDSNY
::: :: .... .. :... : :...: :.:. . :: :..: : .:..
XP_011 TGHKDAVTCVNFSPSGHLLASGSRDKTVRIWVPNVKGESTVFRAHTATVRSVHFCSDGQS
60 70 80 90 100 110
120 130 140 150 160 170
pF1KB5 LLTGGQDKLLRIYDLNKPEAEPKEISGHTSGIKKALWCSEDKQILSA-DDKTVRLWDHAT
..:...:: .... .. . . .: : . .. : . . . :.:: :::::.:::...
XP_011 FVTASDDKTVKVWATHRQKFLFS-LSQHINWVRCAKFSPDGRLIVSASDDKTVKLWDKSS
120 130 140 150 160 170
180 190 200 210 220 230
pF1KB5 MTEVKSLNFNMS-VSSMEYIPEGE-ILVITYGRSIAFHSAVSLDPIKSFEA-PATINSAS
:.: . . :. ... : : : . . .. .. . .. .. :..:. :
XP_011 RECVHSYCEHGGFVTYVDFHPSGTCIAAAGMDNTVKVWDVRTHRLLQHYQLHSAAVNGLS
180 190 200 210 220 230
240 250 260 270 280 290
pF1KB5 LHPEKEFLVAGGEDFKLYKYDYNSGEELESYKGHFGPIHCVRFSPDGELYASGSEDGTLR
.:: ..:.... : : : :. : . .:: :: : :: :: .:::. :
XP_011 FHPSGNYLITASSDSTLKILDLMEGRLLYTLHGHQGPATTVAFSRTGEYFASGGSDEQTV
240 250 260 270 280 290
300 310 320 330 340 350
pF1KB5 LWQTVVGKTYGLWKCVLPEEDSGELAKPKIGFPETTEEELEEIASENSDCIFPSAPDVKA
XP_011 SILEQRLTLTEDKLKQCLENQQLIMQRATP
300 310 320
>>XP_011531862 (OMIM: 614783,614813) PREDICTED: POC1 cen (374 aa)
initn: 317 init1: 127 opt: 327 Z-score: 292.3 bits: 62.7 E(85289): 1.5e-09
Smith-Waterman score: 327; 26.8% identity (57.1% similar) in 280 aa overlap (12-286:17-292)
10 20 30 40 50
pF1KB5 MAMRQTPLTCSGHTRPVVDLAFSGITPYGYFLISACKDGKPMLRQGDTGDWIGTF
:: :. . :: : : :. :. :. . . :
XP_011 MAAPCAEDPSLERHFKGHRDAVTCVDFSINTKQ---LASGSMDSCLMVWHMKPQSRAYRF
10 20 30 40 50
60 70 80 90 100 110
pF1KB5 LGHKGAVWGATLNKDATKAATAAADFTAKVW-DAVSGDELMTLAHKHIVKTVDFTQDSNY
::: :: .... .. :... : :...: :.:. . :: :..: : .:..
XP_011 TGHKDAVTCVNFSPSGHLLASGSRDKTVRIWVPNVKGESTVFRAHTATVRSVHFCSDGQS
60 70 80 90 100 110
120 130 140 150 160 170
pF1KB5 LLTGGQDKLLRIYDLNKPEAEPKEISGHTSGIKKALWCSEDKQILSA-DDKTVRLWDHAT
..:...:: .... .. . . .: : . .. : . . . :.:: :::::.:::...
XP_011 FVTASDDKTVKVWATHRQKFLFS-LSQHINWVRCAKFSPDGRLIVSASDDKTVKLWDKSS
120 130 140 150 160 170
180 190 200 210 220 230
pF1KB5 MTEVKSLNFNMS-VSSMEYIPEGE-ILVITYGRSIAFHSAVSLDPIKSFEA-PATINSAS
:.: . . :. ... : : : . . .. .. . .. .. :..:. :
XP_011 RECVHSYCEHGGFVTYVDFHPSGTCIAAAGMDNTVKVWDVRTHRLLQHYQLHSAAVNGLS
180 190 200 210 220 230
240 250 260 270 280 290
pF1KB5 LHPEKEFLVAGGEDFKLYKYDYNSGEELESYKGHFGPIHCVRFSPDGELYASGSEDGTLR
.:: ..:.... : : : :. : . .:: :: : :: :: .:::. :
XP_011 FHPSGNYLITASSDSTLKILDLMEGRLLYTLHGHQGPATTVAFSRTGEYFASGGSDEQPE
240 250 260 270 280 290
300 310 320 330 340 350
pF1KB5 LWQTVVGKTYGLWKCVLPEEDSGELAKPKIGFPETTEEELEEIASENSDCIFPSAPDVKA
XP_011 VDFPVPPGRGRSVESVQSQPQEPVSVPQTLTSTLEHIVGQLDVLTQTVSILEQRLTLTED
300 310 320 330 340 350
350 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 22:25:23 2016 done: Thu Nov 3 22:25:25 2016
Total Scan time: 7.010 Total Display time: 0.030
Function used was FASTA [36.3.4 Apr, 2011]