Result of FASTA (ccds) for
pF1KB5266
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB5266, 350 aa
1>>>pF1KB5266 350 - 350 aa - 350 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 7.2299+/-0.00113; mu= 5.6059+/- 0.066
mean_var=132.4763+/-27.836, 0's: 0 Z-trim(106.0): 138 B-trim: 17 in 1/48
Lambda= 0.111431
statistics sampled from 8591 (8753) to 8591 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.644), E-opt: 0.2 (0.269), width: 16
Scan time: 2.570
The best scores are: opt bits E(32554)
CCDS8676.1 STRAP gene_id:11171|Hs108|chr12 ( 350) 2352 390.0 1.5e-108
CCDS54592.1 POC1A gene_id:25886|Hs108|chr3 ( 359) 342 66.9 3e-11
CCDS2846.1 POC1A gene_id:25886|Hs108|chr3 ( 407) 342 66.9 3.3e-11
CCDS31869.1 POC1B gene_id:282809|Hs108|chr12 ( 478) 341 66.8 4.2e-11
CCDS2470.1 DAW1 gene_id:164781|Hs108|chr2 ( 415) 339 66.5 4.6e-11
CCDS54591.1 POC1A gene_id:25886|Hs108|chr3 ( 369) 337 66.1 5.3e-11
>>CCDS8676.1 STRAP gene_id:11171|Hs108|chr12 (350 aa)
initn: 2352 init1: 2352 opt: 2352 Z-score: 2062.0 bits: 390.0 E(32554): 1.5e-108
Smith-Waterman score: 2352; 100.0% identity (100.0% similar) in 350 aa overlap (1-350:1-350)
10 20 30 40 50 60
pF1KB5 MAMRQTPLTCSGHTRPVVDLAFSGITPYGYFLISACKDGKPMLRQGDTGDWIGTFLGHKG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS86 MAMRQTPLTCSGHTRPVVDLAFSGITPYGYFLISACKDGKPMLRQGDTGDWIGTFLGHKG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 AVWGATLNKDATKAATAAADFTAKVWDAVSGDELMTLAHKHIVKTVDFTQDSNYLLTGGQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS86 AVWGATLNKDATKAATAAADFTAKVWDAVSGDELMTLAHKHIVKTVDFTQDSNYLLTGGQ
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB5 DKLLRIYDLNKPEAEPKEISGHTSGIKKALWCSEDKQILSADDKTVRLWDHATMTEVKSL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS86 DKLLRIYDLNKPEAEPKEISGHTSGIKKALWCSEDKQILSADDKTVRLWDHATMTEVKSL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB5 NFNMSVSSMEYIPEGEILVITYGRSIAFHSAVSLDPIKSFEAPATINSASLHPEKEFLVA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS86 NFNMSVSSMEYIPEGEILVITYGRSIAFHSAVSLDPIKSFEAPATINSASLHPEKEFLVA
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB5 GGEDFKLYKYDYNSGEELESYKGHFGPIHCVRFSPDGELYASGSEDGTLRLWQTVVGKTY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS86 GGEDFKLYKYDYNSGEELESYKGHFGPIHCVRFSPDGELYASGSEDGTLRLWQTVVGKTY
250 260 270 280 290 300
310 320 330 340 350
pF1KB5 GLWKCVLPEEDSGELAKPKIGFPETTEEELEEIASENSDCIFPSAPDVKA
::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS86 GLWKCVLPEEDSGELAKPKIGFPETTEEELEEIASENSDCIFPSAPDVKA
310 320 330 340 350
>>CCDS54592.1 POC1A gene_id:25886|Hs108|chr3 (359 aa)
initn: 317 init1: 127 opt: 342 Z-score: 315.6 bits: 66.9 E(32554): 3e-11
Smith-Waterman score: 342; 26.4% identity (57.3% similar) in 288 aa overlap (12-294:17-300)
10 20 30 40 50
pF1KB5 MAMRQTPLTCSGHTRPVVDLAFSGITPYGYFLISACKDGKPMLRQGDTGDWIGTF
:: :. . :: : : :. :. :. . . :
CCDS54 MAAPCAEDPSLERHFKGHRDAVTCVDFSINTKQ---LASGSMDSCLMVWHMKPQSRAYRF
10 20 30 40 50
60 70 80 90 100 110
pF1KB5 LGHKGAVWGATLNKDATKAATAAADFTAKVW-DAVSGDELMTLAHKHIVKTVDFTQDSNY
::: :: .... .. :... : :...: :.:. . :: :..: : .:..
CCDS54 TGHKDAVTCVNFSPSGHLLASGSRDKTVRIWVPNVKGESTVFRAHTATVRSVHFCSDGQS
60 70 80 90 100 110
120 130 140 150 160 170
pF1KB5 LLTGGQDKLLRIYDLNKPEAEPKEISGHTSGIKKALWCSEDKQILSA-DDKTVRLWDHAT
..:...:: .... .. . . .: : . .. : . . . :.:: :::::.:::...
CCDS54 FVTASDDKTVKVWATHRQKFLFS-LSQHINWVRCAKFSPDGRLIVSASDDKTVKLWDKSS
120 130 140 150 160 170
180 190 200 210 220 230
pF1KB5 MTEVKSLNFNMS-VSSMEYIPEGE-ILVITYGRSIAFHSAVSLDPIKSFEA-PATINSAS
:.: . . :. ... : : : . . .. .. . .. .. :..:. :
CCDS54 RECVHSYCEHGGFVTYVDFHPSGTCIAAAGMDNTVKVWDVRTHRLLQHYQLHSAAVNGLS
180 190 200 210 220 230
240 250 260 270 280 290
pF1KB5 LHPEKEFLVAGGEDFKLYKYDYNSGEELESYKGHFGPIHCVRFSPDGELYASGSEDGTLR
.:: ..:.... : : : :. : . .:: :: : :: :: .:::. : .
CCDS54 FHPSGNYLITASSDSTLKILDLMEGRLLYTLHGHQGPATTVAFSRTGEYFASGGSDEQVM
240 250 260 270 280 290
300 310 320 330 340 350
pF1KB5 LWQTVVGKTYGLWKCVLPEEDSGELAKPKIGFPETTEEELEEIASENSDCIFPSAPDVKA
.:..
CCDS54 VWKSNFDIVDHGEVTKVPRPPATLASSMGNLTVSILEQRLTLTEDKLKQCLENQQLIMQR
300 310 320 330 340 350
>>CCDS2846.1 POC1A gene_id:25886|Hs108|chr3 (407 aa)
initn: 317 init1: 127 opt: 342 Z-score: 314.8 bits: 66.9 E(32554): 3.3e-11
Smith-Waterman score: 342; 26.4% identity (57.3% similar) in 288 aa overlap (12-294:17-300)
10 20 30 40 50
pF1KB5 MAMRQTPLTCSGHTRPVVDLAFSGITPYGYFLISACKDGKPMLRQGDTGDWIGTF
:: :. . :: : : :. :. :. . . :
CCDS28 MAAPCAEDPSLERHFKGHRDAVTCVDFSINTKQ---LASGSMDSCLMVWHMKPQSRAYRF
10 20 30 40 50
60 70 80 90 100 110
pF1KB5 LGHKGAVWGATLNKDATKAATAAADFTAKVW-DAVSGDELMTLAHKHIVKTVDFTQDSNY
::: :: .... .. :... : :...: :.:. . :: :..: : .:..
CCDS28 TGHKDAVTCVNFSPSGHLLASGSRDKTVRIWVPNVKGESTVFRAHTATVRSVHFCSDGQS
60 70 80 90 100 110
120 130 140 150 160 170
pF1KB5 LLTGGQDKLLRIYDLNKPEAEPKEISGHTSGIKKALWCSEDKQILSA-DDKTVRLWDHAT
..:...:: .... .. . . .: : . .. : . . . :.:: :::::.:::...
CCDS28 FVTASDDKTVKVWATHRQKFLFS-LSQHINWVRCAKFSPDGRLIVSASDDKTVKLWDKSS
120 130 140 150 160 170
180 190 200 210 220 230
pF1KB5 MTEVKSLNFNMS-VSSMEYIPEGE-ILVITYGRSIAFHSAVSLDPIKSFEA-PATINSAS
:.: . . :. ... : : : . . .. .. . .. .. :..:. :
CCDS28 RECVHSYCEHGGFVTYVDFHPSGTCIAAAGMDNTVKVWDVRTHRLLQHYQLHSAAVNGLS
180 190 200 210 220 230
240 250 260 270 280 290
pF1KB5 LHPEKEFLVAGGEDFKLYKYDYNSGEELESYKGHFGPIHCVRFSPDGELYASGSEDGTLR
.:: ..:.... : : : :. : . .:: :: : :: :: .:::. : .
CCDS28 FHPSGNYLITASSDSTLKILDLMEGRLLYTLHGHQGPATTVAFSRTGEYFASGGSDEQVM
240 250 260 270 280 290
300 310 320 330 340 350
pF1KB5 LWQTVVGKTYGLWKCVLPEEDSGELAKPKIGFPETTEEELEEIASENSDCIFPSAPDVKA
.:..
CCDS28 VWKSNFDIVDHGEVTKVPRPPATLASSMGNLPEVDFPVPPGRGRSVESVQSQPQEPVSVP
300 310 320 330 340 350
>>CCDS31869.1 POC1B gene_id:282809|Hs108|chr12 (478 aa)
initn: 382 init1: 161 opt: 341 Z-score: 312.9 bits: 66.8 E(32554): 4.2e-11
Smith-Waterman score: 341; 25.9% identity (57.6% similar) in 290 aa overlap (12-294:16-299)
10 20 30 40 50
pF1KB5 MAMRQTPLTCSGHTRPVVDLAFSGITPYGYFLISACKDGKPMLRQGDTGDWIGTFL
:: ...: .: : : : .: : :: . ..
CCDS31 MASATEDPVLERYFKGHKAAITSLDLS---PNGKQLATASWDTFLMLWNFKPHARAYRYV
10 20 30 40 50
60 70 80 90 100 110
pF1KB5 GHKGAVWGATLNKDATKAATAAADFTAKVWDAVSGDELMTL-AHKHIVKTVDFTQDSNYL
::: .: .. .. .. :.:. : :...: . .. . :: :..:::. :...:
CCDS31 GHKDVVTSVQFSPHGNLLASASRDRTVRLWIPDKRGKFSEFKAHTAPVRSVDFSADGQFL
60 70 80 90 100 110
120 130 140 150 160 170
pF1KB5 LTGGQDKLLRIYDLNKPEAEPKEISGHTSGIKKALWCSEDKQILS-ADDKTVRLWDHATM
:...:: ...... . . . :: .. : . . . :.: ..:::...:: ..
CCDS31 ATASEDKSIKVWSMYR-QRFLYSLYRHTHWVRCAKFSPDGRLIVSCSEDKTIKIWDTTNK
120 130 140 150 160 170
180 190 200 210 220
pF1KB5 TEVKSLNFNMSVSSMEYI---PEGEILVITYGRSIAFHSAVSLDPI-KSFEAPAT-INSA
:. ::. ::. ... : : .. . . . . : .. . . ... . .:
CCDS31 QCVN--NFSDSVGFANFVDFNPSGTCIASAGSDQTVKVWDVRVNKLLQHYQVHSGGVNCI
180 190 200 210 220 230
230 240 250 260 270 280
pF1KB5 SLHPEKEFLVAGGEDFKLYKYDYNSGEELESYKGHFGPIHCVRFSPDGELYASGSEDGTL
:.:: ..:.... : : : :. . . .:: ::. : :: :::.:::. : .
CCDS31 SFHPSGNYLITASSDGTLKILDLLEGRLIYTLQGHTGPVFTVSFSKGGELFASGGADTQV
240 250 260 270 280 290
290 300 310 320 330 340
pF1KB5 RLWQTVVGKTYGLWKCVLPEEDSGELAKPKIGFPETTEEELEEIASENSDCIFPSAPDVK
::.:
CCDS31 LLWRTNFDELHCKGLTKRNLKRLHFDSPPHLLDIYPRTPHPHEEKVETVEINPKLEVIDL
300 310 320 330 340 350
>>CCDS2470.1 DAW1 gene_id:164781|Hs108|chr2 (415 aa)
initn: 204 init1: 134 opt: 339 Z-score: 312.0 bits: 66.5 E(32554): 4.6e-11
Smith-Waterman score: 339; 26.6% identity (60.7% similar) in 290 aa overlap (9-293:129-415)
10 20 30
pF1KB5 MAMRQTPLTCSGHTRPVVDLAFSGITPYGYFLISACKD
: :: : .::. .::: . .. :
CCDS24 ALNKSGSCFITGSYDRTCKLWDTASGEELNTLEGHRNVVYAIAFN--NPYGDKIATGSFD
100 110 120 130 140 150
40 50 60 70 80 90
pF1KB5 GKPMLRQGDTGDWIGTFLGHKGAVWGATLNKDATKAATAAADFTAKVWDAVSGDELMTL-
: . .:: :: :: . . ..: ..: .::.. : :::.:: .:.:..::
CCDS24 KTCKLWSVETGKCYHTFRGHTAEIVCLSFNPQSTLVATGSMDTTAKLWDIQNGEEVYTLR
160 170 180 190 200 210
100 110 120 130 140 150
pF1KB5 AHKHIVKTVDFTQDSNYLLTGGQDKLLRIYDLNKPEAEPKEISGHTSGIKKALWCSEDKQ
.:. . ...:. ... ..::. :. . ..: . . . . . :: . :..: . . .
CCDS24 GHSAEIISLSFNTSGDRIITGSFDHTVVVWDADTGR-KVNILIGHCAEISSASFNWDCSL
220 230 240 250 260 270
160 170 180 190 200 210
pF1KB5 ILSAD-DKTVRLWDHATMTEVKSLN-FNMSVSSMEYIPEGEILVITYGRSIA-FHSAVSL
::... ::: .::: .. : .:. . . . . :.... . . . : . ::..
CCDS24 ILTGSMDKTCKLWDATNGKCVATLTGHDDEILDSCFDYTGKLIATASADGTARIFSAATR
280 290 300 310 320 330
220 230 240 250 260 270
pF1KB5 DPIKSFEA-PATINSASLHPEKEFLVAGGEDFKLYKYDYNSGEELESYKGHFGPIHCVRF
: ..:. . :.. :..:. . :..:. : .: ..:. :. .:: : :
CCDS24 KCIAKLEGHEGEISKISFNPQGNHLLTGSSDKTARIWDAQTGQCLQVLEGHTDEIFSCAF
340 350 360 370 380 390
280 290 300 310 320 330
pF1KB5 SPDGELYASGSEDGTLRLWQTVVGKTYGLWKCVLPEEDSGELAKPKIGFPETTEEELEEI
. :.. .::.:.: :.:.
CCDS24 NYKGNIVITGSKDNTCRIWR
400 410
>>CCDS54591.1 POC1A gene_id:25886|Hs108|chr3 (369 aa)
initn: 264 init1: 127 opt: 337 Z-score: 311.0 bits: 66.1 E(32554): 5.3e-11
Smith-Waterman score: 337; 26.9% identity (60.4% similar) in 245 aa overlap (55-294:19-262)
30 40 50 60 70 80
pF1KB5 ITPYGYFLISACKDGKPMLRQGDTGDWIGTFLGHKGAVWGATLNKDATKAATAAADFTAK
: ::: :: .... .. :... : :..
CCDS54 MDSCLMVWHMKPQSRAYRFTGHKDAVTCVNFSPSGHLLASGSRDKTVR
10 20 30 40
90 100 110 120 130 140
pF1KB5 VW-DAVSGDELMTLAHKHIVKTVDFTQDSNYLLTGGQDKLLRIYDLNKPEAEPKEISGHT
.: :.:. . :: :..: : .:.. ..:...:: .... .. . . .: :
CCDS54 IWVPNVKGESTVFRAHTATVRSVHFCSDGQSFVTASDDKTVKVWATHRQKFLFS-LSQHI
50 60 70 80 90 100
150 160 170 180 190 200
pF1KB5 SGIKKALWCSEDKQILSA-DDKTVRLWDHATMTEVKSLNFNMS-VSSMEYIPEGE-ILVI
. .. : . . . :.:: :::::.:::... :.: . . :. ... : : : .
CCDS54 NWVRCAKFSPDGRLIVSASDDKTVKLWDKSSRECVHSYCEHGGFVTYVDFHPSGTCIAAA
110 120 130 140 150 160
210 220 230 240 250
pF1KB5 TYGRSIAFHSAVSLDPIKSFEA-PATINSASLHPEKEFLVAGGEDFKLYKYDYNSGEELE
. .. .. . .. .. :..:. :.:: ..:.... : : : :. :
CCDS54 GMDNTVKVWDVRTHRLLQHYQLHSAAVNGLSFHPSGNYLITASSDSTLKILDLMEGRLLY
170 180 190 200 210 220
260 270 280 290 300 310
pF1KB5 SYKGHFGPIHCVRFSPDGELYASGSEDGTLRLWQTVVGKTYGLWKCVLPEEDSGELAKPK
. .:: :: : :: :: .:::. : . .:..
CCDS54 TLHGHQGPATTVAFSRTGEYFASGGSDEQVMVWKSNFDIVDHGEVTKVPRPPATLASSMG
230 240 250 260 270 280
320 330 340 350
pF1KB5 IGFPETTEEELEEIASENSDCIFPSAPDVKA
CCDS54 NLPEVDFPVPPGRGRSVESVQSQPQEPVSVPQTLTSTLEHIVGQLDVLTQTVSILEQRLT
290 300 310 320 330 340
350 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 22:25:23 2016 done: Thu Nov 3 22:25:23 2016
Total Scan time: 2.570 Total Display time: 0.020
Function used was FASTA [36.3.4 Apr, 2011]