Result of FASTA (omim) for
pF1KB5258
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB5258, 324 aa
1>>>pF1KB5258 324 - 324 aa - 324 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 7.5365+/-0.000295; mu= 9.3797+/- 0.019
mean_var=200.0461+/-41.199, 0's: 0 Z-trim(124.0): 39 B-trim: 864 in 2/57
Lambda= 0.090680
statistics sampled from 44837 (44888) to 44837 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.804), E-opt: 0.2 (0.526), width: 16
Scan time: 9.270
The best scores are: opt bits E(85289)
NP_004550 (OMIM: 154030) nuclease-sensitive elemen ( 324) 2259 307.0 3.3e-83
NP_057066 (OMIM: 611447) Y-box-binding protein 2 [ ( 364) 832 120.4 5.7e-27
NP_003642 (OMIM: 603437) Y-box-binding protein 3 i ( 372) 775 113.0 1e-24
XP_016875611 (OMIM: 603437) PREDICTED: Y-box-bindi ( 369) 773 112.7 1.2e-24
NP_001138898 (OMIM: 603437) Y-box-binding protein ( 303) 769 112.1 1.5e-24
XP_016875612 (OMIM: 603437) PREDICTED: Y-box-bindi ( 300) 751 109.7 7.7e-24
XP_011519173 (OMIM: 603437) PREDICTED: Y-box-bindi ( 200) 706 103.7 3.5e-22
XP_016880202 (OMIM: 611447) PREDICTED: Y-box-bindi ( 379) 569 86.0 1.3e-16
XP_011534120 (OMIM: 611044) PREDICTED: protein lin ( 258) 250 44.1 0.00037
XP_006715540 (OMIM: 611044) PREDICTED: protein lin ( 269) 250 44.1 0.00039
NP_001004317 (OMIM: 611044) protein lin-28 homolog ( 250) 244 43.3 0.00063
>>NP_004550 (OMIM: 154030) nuclease-sensitive element-bi (324 aa)
initn: 2259 init1: 2259 opt: 2259 Z-score: 1614.7 bits: 307.0 E(85289): 3.3e-83
Smith-Waterman score: 2259; 100.0% identity (100.0% similar) in 324 aa overlap (1-324:1-324)
10 20 30 40 50 60
pF1KB5 MSSEAETQQPPAAPPAAPALSAADTKPGTTGSGAGSGGPGGLTSAAPAGGDKKVIATKVL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 MSSEAETQQPPAAPPAAPALSAADTKPGTTGSGAGSGGPGGLTSAAPAGGDKKVIATKVL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 GTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 GTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGA
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB5 EAANVTGPGGVPVQGSKYAADRNHYRRYPRRRGPPRNYQQNYQNSESGEKNEGSESAPEG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 EAANVTGPGGVPVQGSKYAADRNHYRRYPRRRGPPRNYQQNYQNSESGEKNEGSESAPEG
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB5 QAQQRRPYRRRRFPPYYMRRPYGRRPQYSNPPVQGEVMEGADNQGAGEQGRPVRQNMYRG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 QAQQRRPYRRRRFPPYYMRRPYGRRPQYSNPPVQGEVMEGADNQGAGEQGRPVRQNMYRG
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB5 YRPRFRRGPPRQRQPREDGNEEDKENQGDETQGQQPPQRRYRRNFNYRRRRPENPKPQDG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 YRPRFRRGPPRQRQPREDGNEEDKENQGDETQGQQPPQRRYRRNFNYRRRRPENPKPQDG
250 260 270 280 290 300
310 320
pF1KB5 KETKAADPPAENSSAPEAEQGGAE
::::::::::::::::::::::::
NP_004 KETKAADPPAENSSAPEAEQGGAE
310 320
>>NP_057066 (OMIM: 611447) Y-box-binding protein 2 [Homo (364 aa)
initn: 717 init1: 571 opt: 832 Z-score: 605.2 bits: 120.4 E(85289): 5.7e-27
Smith-Waterman score: 832; 48.1% identity (66.7% similar) in 324 aa overlap (10-316:53-352)
10 20 30
pF1KB5 MSSEAETQQPPAAPPAAPALSAADTKPGTTGSGAGSGGP
: :. :.::. . ::. .. : :: :
NP_057 AGVVAVVVPVPAGEPQKGGGAGGGGGAASGPAAGTPSAPG----SRTPGNPAT-AVSGTP
30 40 50 60 70
40 50 60 70 80 90
pF1KB5 GGLTSAAPA--GGDKKVIATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPR
: :: .:: :.: .::::::::::::::::::::::::::::::::::.::::
NP_057 -----APPARSQADKPVLAIQVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKRNNPR
80 90 100 110 120 130
100 110 120 130 140 150
pF1KB5 KYLRSVGDGETVEFDVVEGEKGAEAANVTGPGGVPVQGSKYAADRNHYRRY-PR--RRGP
:.:::::::::::::::::::::::.::::::::::.::.:: .: . ::. :: .:
NP_057 KFLRSVGDGETVEFDVVEGEKGAEATNVTGPGGVPVKGSRYAPNRRKSRRFIPRPPSVAP
140 150 160 170 180 190
160 170 180 190 200 210
pF1KB5 PRNYQQNYQNSESGEKNEGSESAPEGQAQQRRPYRRRRFPPYYMRRPYGRRPQYSNPPVQ
: . .. .: ..: .. :: :: :: ::...:: . : :. :: :
NP_057 PPMVAE-IPSAGTGPGSKGERAEDSGQ----RP-RRWCPPPFFYRRRFVRGPR---PPNQ
200 210 220 230 240
220 230 240 250 260
pF1KB5 GEVMEGADNQGAGEQGRPVRQNMYRG--------YRPRFRRG--P-PRQRQPREDGNEED
. .::.: : . :.. .. .: .:::.:: : :::. : :. :
NP_057 QQPIEGTDRVEPKETA-PLEGHQQQGDERVPPPRFRPRYRRPFRPRPRQQPTTEGGDGET
250 260 270 280 290 300
270 280 290 300 310 320
pF1KB5 KENQGDETQGQQP-PQRRYRRNFNYRRRRPENPKPQDGKETKAADPPAENSSAPEAEQGG
: .:: ..:..: ::: : . ..::: . : ::.. . .: : ..:::
NP_057 KPSQGP-ADGSRPEPQRPRNRPY-FQRRRQQAPGPQQAPGPR--QPAAPETSAPVNSGDP
310 320 330 340 350
pF1KB5 AE
NP_057 TTTILE
360
>>NP_003642 (OMIM: 603437) Y-box-binding protein 3 isofo (372 aa)
initn: 1018 init1: 614 opt: 775 Z-score: 564.8 bits: 113.0 E(85289): 1e-24
Smith-Waterman score: 1088; 57.4% identity (71.6% similar) in 338 aa overlap (10-324:41-372)
10 20 30
pF1KB5 MSSEAETQQPPAAPPAAPALSAADTKPGTTGSGAGSGGP
: :: :: :: .: . :: .. :..:
NP_003 TTTTLPQAPTEAAAAAPQDPAPKSPVGSGAPQAAAPA-PAAHVAGN-PGGDAAPAATGTA
20 30 40 50 60
40 50 60 70 80 90
pF1KB5 GGLTSAAPAGGD---KKVIATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNP
.. . :. ::.. :::.:::::::::::::::::::::::::::::::::::::::::
NP_003 AAASLATAAGSEDAEKKVLATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNP
70 80 90 100 110 120
100 110 120 130 140 150
pF1KB5 RKYLRSVGDGETVEFDVVEGEKGAEAANVTGPGGVPVQGSKYAADRNHYRR--YPRRRGP
:::::::::::::::::::::::::::::::: ::::.::.::::: .::: : :::::
NP_003 RKYLRSVGDGETVEFDVVEGEKGAEAANVTGPDGVPVEGSRYAADRRRYRRGYYGRRRGP
130 140 150 160 170 180
160 170 180 190 200
pF1KB5 PRNYQQNYQNSESGEKNEGSESAPEGQ-----AQQRRP-----YRRRRFPPYYMRRPYGR
:::: . .. :: .. . : . : : ::: ::.::::::.. . . :
NP_003 PRNYAGEEEEEGSGSSEGFDPPATDRQFSGARNQLRRPQYRPQYRQRRFPPYHVGQTFDR
190 200 210 220 230 240
210 220 230 240 250
pF1KB5 RPQYSNPP--VQ-GEVMEGADN--QGAGEQGRPVRQNMYRGYRPRFR-RGPPRQRQPRED
: . : .: ::. : :. .:: :: ::..: ::::.: ::::: :
NP_003 RSRVLPHPNRIQAGEIGEMKDGVPEGAQLQG-PVHRNPT--YRPRYRSRGPPRPRPAPAV
250 260 270 280 290 300
260 270 280 290 300 310
pF1KB5 GNEEDKENQGDETQGQQPPQRR-YRRNFNYRRR-RPENPKPQDGKETKAADPPAENSSAP
:. :::::: . .:: :: ::: .::::: :: : :::::.::.. :.:: ::
NP_003 GEAEDKENQQATSGPNQPSVRRGYRRPYNYRRRPRPPNAPSQDGKEAKAGEAPTENP-AP
310 320 330 340 350 360
320
pF1KB5 EAEQGGAE
..:..::
NP_003 PTQQSSAE
370
>>XP_016875611 (OMIM: 603437) PREDICTED: Y-box-binding p (369 aa)
initn: 996 init1: 614 opt: 773 Z-score: 563.4 bits: 112.7 E(85289): 1.2e-24
Smith-Waterman score: 1067; 57.0% identity (70.9% similar) in 337 aa overlap (10-324:41-369)
10 20 30
pF1KB5 MSSEAETQQPPAAPPAAPALSAADTKPGTTGSGAGSGGP
: :: :: :: .: . :: .. :..:
XP_016 TTTTLPQAPTEAAAAAPQDPAPKSPVGSGAPQAAAPA-PAAHVAGN-PGGDAAPAATGTA
20 30 40 50 60
40 50 60 70 80 90
pF1KB5 GGLTSAAPAGGD---KKVIATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNP
.. . :. ::.. :::.:::::::::::::::::::::::::::::::::::::::::
XP_016 AAASLATAAGSEDAEKKVLATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNP
70 80 90 100 110 120
100 110 120 130 140 150
pF1KB5 RKYLRSVGDGETVEFDVVEGEKGAEAANVTGPGGVPVQGSKYAADRNHYRR--YPRRRGP
:::::::::::::::::::::::::::::::: ::::.::.::::: .::: : :::::
XP_016 RKYLRSVGDGETVEFDVVEGEKGAEAANVTGPDGVPVEGSRYAADRRRYRRGYYGRRRGP
130 140 150 160 170 180
160 170 180 190 200
pF1KB5 PRNYQQNYQNSESGEKNEGSESAPEGQ-----AQQRRP-----YRRRRFPPYYMRRPYGR
:::: . .. :: .. . : . : : ::: ::.::::::.. . . :
XP_016 PRNYAGEEEEEGSGSSEGFDPPATDRQFSGARNQLRRPQYRPQYRQRRFPPYHVGQTFDR
190 200 210 220 230 240
210 220 230 240 250
pF1KB5 RPQYSNPP--VQ-GEVMEGADN--QGAGEQGRPVRQNMYRGYRPRFRRGPPRQRQPREDG
: . : .: ::. : :. .:: :: ::..: ::: ::::: : :
XP_016 RSRVLPHPNRIQAGEIGEMKDGVPEGAQLQG-PVHRNPT--YRP--SRGPPRPRPAPAVG
250 260 270 280 290 300
260 270 280 290 300 310
pF1KB5 NEEDKENQGDETQGQQPPQRR-YRRNFNYRRR-RPENPKPQDGKETKAADPPAENSSAPE
. :::::: . .:: :: ::: .::::: :: : :::::.::.. :.:: ::
XP_016 EAEDKENQQATSGPNQPSVRRGYRRPYNYRRRPRPPNAPSQDGKEAKAGEAPTENP-APP
310 320 330 340 350 360
320
pF1KB5 AEQGGAE
..:..::
XP_016 TQQSSAE
>>NP_001138898 (OMIM: 603437) Y-box-binding protein 3 is (303 aa)
initn: 903 init1: 614 opt: 769 Z-score: 561.6 bits: 112.1 E(85289): 1.5e-24
Smith-Waterman score: 915; 53.9% identity (65.3% similar) in 323 aa overlap (10-324:41-303)
10 20 30
pF1KB5 MSSEAETQQPPAAPPAAPALSAADTKPGTTGSGAGSGGP
: :: :: :: .: . :: .. :..:
NP_001 TTTTLPQAPTEAAAAAPQDPAPKSPVGSGAPQAAAPA-PAAHVAGN-PGGDAAPAATGTA
20 30 40 50 60
40 50 60 70 80 90
pF1KB5 GGLTSAAPAGGD---KKVIATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNP
.. . :. ::.. :::.:::::::::::::::::::::::::::::::::::::::::
NP_001 AAASLATAAGSEDAEKKVLATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNP
70 80 90 100 110 120
100 110 120 130 140 150
pF1KB5 RKYLRSVGDGETVEFDVVEGEKGAEAANVTGPGGVPVQGSKYAADRNHYRR--YPRRRGP
:::::::::::::::::::::::::::::::: ::::.::.::::: .::: : :::::
NP_001 RKYLRSVGDGETVEFDVVEGEKGAEAANVTGPDGVPVEGSRYAADRRRYRRGYYGRRRGP
130 140 150 160 170 180
160 170 180 190 200 210
pF1KB5 PRNYQQNYQNSESGEKNEGSESAPEGQAQQRRPYRRRRFPPYYMRRPYGRRPQYSNPPVQ
::: .:: .: ....::: :: . : .: ::
NP_001 PRN---------AGEIGEMKDGVPEG-AQLQGPVHR-------------------NPT--
190 200 210
220 230 240 250 260 270
pF1KB5 GEVMEGADNQGAGEQGRPVRQNMYRGYRPRFR-RGPPRQRQPREDGNEEDKENQGDETQG
::::.: ::::: : :. :::::: .
NP_001 --------------------------YRPRYRSRGPPRPRPAPAVGEAEDKENQQATSGP
220 230 240 250
280 290 300 310 320
pF1KB5 QQPPQRR-YRRNFNYRRR-RPENPKPQDGKETKAADPPAENSSAPEAEQGGAE
.:: :: ::: .::::: :: : :::::.::.. :.:: :: ..:..::
NP_001 NQPSVRRGYRRPYNYRRRPRPPNAPSQDGKEAKAGEAPTENP-APPTQQSSAE
260 270 280 290 300
>>XP_016875612 (OMIM: 603437) PREDICTED: Y-box-binding p (300 aa)
initn: 888 init1: 614 opt: 751 Z-score: 549.0 bits: 109.7 E(85289): 7.7e-24
Smith-Waterman score: 894; 53.4% identity (64.6% similar) in 322 aa overlap (10-324:41-300)
10 20 30
pF1KB5 MSSEAETQQPPAAPPAAPALSAADTKPGTTGSGAGSGGP
: :: :: :: .: . :: .. :..:
XP_016 TTTTLPQAPTEAAAAAPQDPAPKSPVGSGAPQAAAPA-PAAHVAGN-PGGDAAPAATGTA
20 30 40 50 60
40 50 60 70 80 90
pF1KB5 GGLTSAAPAGGD---KKVIATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNP
.. . :. ::.. :::.:::::::::::::::::::::::::::::::::::::::::
XP_016 AAASLATAAGSEDAEKKVLATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNP
70 80 90 100 110 120
100 110 120 130 140 150
pF1KB5 RKYLRSVGDGETVEFDVVEGEKGAEAANVTGPGGVPVQGSKYAADRNHYRR--YPRRRGP
:::::::::::::::::::::::::::::::: ::::.::.::::: .::: : :::::
XP_016 RKYLRSVGDGETVEFDVVEGEKGAEAANVTGPDGVPVEGSRYAADRRRYRRGYYGRRRGP
130 140 150 160 170 180
160 170 180 190 200 210
pF1KB5 PRNYQQNYQNSESGEKNEGSESAPEGQAQQRRPYRRRRFPPYYMRRPYGRRPQYSNPPVQ
::: .:: .: ....::: :: . : .: ::
XP_016 PRN---------AGEIGEMKDGVPEG-AQLQGPVHR-------------------NPT--
190 200 210
220 230 240 250 260 270
pF1KB5 GEVMEGADNQGAGEQGRPVRQNMYRGYRPRFRRGPPRQRQPREDGNEEDKENQGDETQGQ
::: ::::: : :. :::::: . .
XP_016 --------------------------YRP--SRGPPRPRPAPAVGEAEDKENQQATSGPN
220 230 240
280 290 300 310 320
pF1KB5 QPPQRR-YRRNFNYRRR-RPENPKPQDGKETKAADPPAENSSAPEAEQGGAE
:: :: ::: .::::: :: : :::::.::.. :.:: :: ..:..::
XP_016 QPSVRRGYRRPYNYRRRPRPPNAPSQDGKEAKAGEAPTENP-APPTQQSSAE
250 260 270 280 290 300
>>XP_011519173 (OMIM: 603437) PREDICTED: Y-box-binding p (200 aa)
initn: 669 init1: 614 opt: 706 Z-score: 519.3 bits: 103.7 E(85289): 3.5e-22
Smith-Waterman score: 706; 71.9% identity (83.8% similar) in 160 aa overlap (10-164:41-198)
10 20 30
pF1KB5 MSSEAETQQPPAAPPAAPALSAADTKPGTTGSGAGSGGP
: :: :: :: .: . :: .. :..:
XP_011 TTTTLPQAPTEAAAAAPQDPAPKSPVGSGAPQAAAPA-PAAHVAGN-PGGDAAPAATGTA
20 30 40 50 60
40 50 60 70 80 90
pF1KB5 GGLTSAAPAGGD---KKVIATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNP
.. . :. ::.. :::.:::::::::::::::::::::::::::::::::::::::::
XP_011 AAASLATAAGSEDAEKKVLATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNP
70 80 90 100 110 120
100 110 120 130 140 150
pF1KB5 RKYLRSVGDGETVEFDVVEGEKGAEAANVTGPGGVPVQGSKYAADRNHYRR--YPRRRGP
:::::::::::::::::::::::::::::::: ::::.::.::::: .::: : :::::
XP_011 RKYLRSVGDGETVEFDVVEGEKGAEAANVTGPDGVPVEGSRYAADRRRYRRGYYGRRRGP
130 140 150 160 170 180
160 170 180 190 200 210
pF1KB5 PRNYQQNYQNSESGEKNEGSESAPEGQAQQRRPYRRRRFPPYYMRRPYGRRPQYSNPPVQ
::: .. . :
XP_011 PRNISDVWFNRR
190 200
>>XP_016880202 (OMIM: 611447) PREDICTED: Y-box-binding p (379 aa)
initn: 483 init1: 337 opt: 569 Z-score: 419.0 bits: 86.0 E(85289): 1.3e-16
Smith-Waterman score: 792; 46.0% identity (63.7% similar) in 339 aa overlap (10-316:53-367)
10 20 30
pF1KB5 MSSEAETQQPPAAPPAAPALSAADTKPGTTGSGAGSGGP
: :. :.::. . ::. .. : :: :
XP_016 AGVVAVVVPVPAGEPQKGGGAGGGGGAASGPAAGTPSAPG----SRTPGNPAT-AVSGTP
30 40 50 60 70
40 50 60 70 80
pF1KB5 GGLTSAAPA--GGDKKVIATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQ---------
: :: .:: :.: .::::::::::::::::::::::::::::::
XP_016 -----APPARSQADKPVLAIQVLGTVKWFNVRNGYGFINRNDTKEDVFVHQLENHCLVER
80 90 100 110 120 130
90 100 110 120 130 140
pF1KB5 ------TAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPGGVPVQGSKYAADR
::::.:::::.:::::::::::::::::::::::.::::::::::.::.:: .:
XP_016 ALTGTETAIKRNNPRKFLRSVGDGETVEFDVVEGEKGAEATNVTGPGGVPVKGSRYAPNR
140 150 160 170 180 190
150 160 170 180 190
pF1KB5 NHYRRY-PR--RRGPPRNYQQNYQNSESGEKNEGSESAPEGQAQQRRPYRRRRFPPYYMR
. ::. :: .:: . .. .: ..: .. :: :: :: ::...:
XP_016 RKSRRFIPRPPSVAPPPMVAE-IPSAGTGPGSKGERAEDSGQ----RP-RRWCPPPFFYR
200 210 220 230 240
200 210 220 230 240
pF1KB5 RPYGRRPQYSNPPVQGEVMEGADNQGAGEQGRPVRQNMYRG--------YRPRFRRG--P
: . : :. :: : . .::.: : . :.. .. .: .:::.:: :
XP_016 RRFVRGPR---PPNQQQPIEGTDRVEPKETA-PLEGHQQQGDERVPPPRFRPRYRRPFRP
250 260 270 280 290 300
250 260 270 280 290 300
pF1KB5 -PRQRQPREDGNEEDKENQGDETQGQQP-PQRRYRRNFNYRRRRPENPKPQDGKETKAAD
:::. : :. : : .:: ..:..: ::: : . ..::: . : ::.. . .
XP_016 RPRQQPTTEGGDGETKPSQGP-ADGSRPEPQRPRNRPY-FQRRRQQAPGPQQAPGPR--Q
310 320 330 340 350
310 320
pF1KB5 PPAENSSAPEAEQGGAE
: : ..:::
XP_016 PAAPETSAPVNSGDPTTTILE
360 370
>>XP_011534120 (OMIM: 611044) PREDICTED: protein lin-28 (258 aa)
initn: 160 init1: 130 opt: 250 Z-score: 195.5 bits: 44.1 E(85289): 0.00037
Smith-Waterman score: 250; 26.9% identity (50.2% similar) in 271 aa overlap (19-275:3-256)
10 20 30 40 50 60
pF1KB5 MSSEAETQQPPAAPPAAPALSAADTKPGTTGSGAGSGGPGGLTSAAPAGGDKKVIATKVL
... ... :: ...:.: :: : :: ...:. .
XP_011 MRSFNQVSSAPGGASKGGGEE-PGKLPE--PAEEESQVL--RGT
10 20 30
70 80 90 100 110
pF1KB5 GTVKWFNVRNGYGFI---NRN----DTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDV
: :::::: :.::: ::. : ::::::. . .. .::. .:: :::
XP_011 GHCKWFNVRMGFGFISMINREGSPLDIPVDVFVHQSKLFMEG----FRSLKEGEPVEFTF
40 50 60 70 80 90
120 130 140 150 160 170
pF1KB5 VEGEKGAEAANVTGPGGVPVQGS-KYAADRNHYRRYPRRRGPPRNYQQNYQNSESGEKNE
.. :: :. :::::: : :: . .. .: :. : : :. . . .. : .
XP_011 KKSSKGLESIRVTGPGGSPCLGSERRPKGKTLQKRKPK--GD-RCYNCGGLDHHAKECSL
100 110 120 130 140 150
180 190 200 210 220
pF1KB5 GSESAPEGQAQQ------RRPYRRRRFPPYYMRRPYGRRPQYSNPPVQGEVMEGADNQGA
. :. :.. :: ::. :.: .. .. . :
XP_011 PPQPKKCHYCQSIMHMVANCPHKNVAQPP---ASSQGRQEAESQPCTS--TLPREVGGGH
160 170 180 190 200
230 240 250 260 270 280
pF1KB5 GEQGRPVRQNMYRGYRPRFRRGPPRQRQPREDGNEEDKENQGDETQGQQPPQRRYRRNFN
: . : :. : :.: . . . . :.. ..: .: ..
XP_011 GCTSPPFPQEARAEISERSGRSPQEASSTKSSIAPEEQSKKGPSVQKRKKT
210 220 230 240 250
290 300 310 320
pF1KB5 YRRRRPENPKPQDGKETKAADPPAENSSAPEAEQGGAE
>>XP_006715540 (OMIM: 611044) PREDICTED: protein lin-28 (269 aa)
initn: 160 init1: 130 opt: 250 Z-score: 195.3 bits: 44.1 E(85289): 0.00039
Smith-Waterman score: 250; 26.9% identity (50.2% similar) in 271 aa overlap (19-275:14-267)
10 20 30 40 50 60
pF1KB5 MSSEAETQQPPAAPPAAPALSAADTKPGTTGSGAGSGGPGGLTSAAPAGGDKKVIATKVL
... ... :: ...:.: :: : :: ...:. .
XP_006 MSHRRQVLQKRMRSFNQVSSAPGGASKGGGEE-PGKLPE--PAEEESQVL--RGT
10 20 30 40 50
70 80 90 100 110
pF1KB5 GTVKWFNVRNGYGFI---NRN----DTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDV
: :::::: :.::: ::. : ::::::. . .. .::. .:: :::
XP_006 GHCKWFNVRMGFGFISMINREGSPLDIPVDVFVHQSKLFMEG----FRSLKEGEPVEFTF
60 70 80 90 100
120 130 140 150 160 170
pF1KB5 VEGEKGAEAANVTGPGGVPVQGS-KYAADRNHYRRYPRRRGPPRNYQQNYQNSESGEKNE
.. :: :. :::::: : :: . .. .: :. : : :. . . .. : .
XP_006 KKSSKGLESIRVTGPGGSPCLGSERRPKGKTLQKRKPK--GD-RCYNCGGLDHHAKECSL
110 120 130 140 150 160
180 190 200 210 220
pF1KB5 GSESAPEGQAQQ------RRPYRRRRFPPYYMRRPYGRRPQYSNPPVQGEVMEGADNQGA
. :. :.. :: ::. :.: .. .. . :
XP_006 PPQPKKCHYCQSIMHMVANCPHKNVAQPP---ASSQGRQEAESQPCTS--TLPREVGGGH
170 180 190 200 210
230 240 250 260 270 280
pF1KB5 GEQGRPVRQNMYRGYRPRFRRGPPRQRQPREDGNEEDKENQGDETQGQQPPQRRYRRNFN
: . : :. : :.: . . . . :.. ..: .: ..
XP_006 GCTSPPFPQEARAEISERSGRSPQEASSTKSSIAPEEQSKKGPSVQKRKKT
220 230 240 250 260
290 300 310 320
pF1KB5 YRRRRPENPKPQDGKETKAADPPAENSSAPEAEQGGAE
324 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 16:26:36 2016 done: Thu Nov 3 16:26:38 2016
Total Scan time: 9.270 Total Display time: 0.020
Function used was FASTA [36.3.4 Apr, 2011]