Result of FASTA (ccds) for
pF1KB5258
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB5258, 324 aa
1>>>pF1KB5258 324 - 324 aa - 324 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 7.6072+/-0.000724; mu= 8.9247+/- 0.044
mean_var=184.8037+/-36.697, 0's: 0 Z-trim(116.5): 22 B-trim: 9 in 1/51
Lambda= 0.094345
statistics sampled from 17141 (17161) to 17141 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.807), E-opt: 0.2 (0.527), width: 16
Scan time: 3.090
The best scores are: opt bits E(32554)
CCDS470.1 YBX1 gene_id:4904|Hs108|chr1 ( 324) 2259 318.7 3.9e-87
CCDS11098.1 YBX2 gene_id:51087|Hs108|chr17 ( 364) 832 124.5 1.3e-28
CCDS8630.1 YBX3 gene_id:8531|Hs108|chr12 ( 372) 775 116.8 2.8e-26
CCDS44831.1 YBX3 gene_id:8531|Hs108|chr12 ( 303) 769 115.9 4.2e-26
>>CCDS470.1 YBX1 gene_id:4904|Hs108|chr1 (324 aa)
initn: 2259 init1: 2259 opt: 2259 Z-score: 1677.8 bits: 318.7 E(32554): 3.9e-87
Smith-Waterman score: 2259; 100.0% identity (100.0% similar) in 324 aa overlap (1-324:1-324)
10 20 30 40 50 60
pF1KB5 MSSEAETQQPPAAPPAAPALSAADTKPGTTGSGAGSGGPGGLTSAAPAGGDKKVIATKVL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 MSSEAETQQPPAAPPAAPALSAADTKPGTTGSGAGSGGPGGLTSAAPAGGDKKVIATKVL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 GTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 GTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGA
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB5 EAANVTGPGGVPVQGSKYAADRNHYRRYPRRRGPPRNYQQNYQNSESGEKNEGSESAPEG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 EAANVTGPGGVPVQGSKYAADRNHYRRYPRRRGPPRNYQQNYQNSESGEKNEGSESAPEG
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB5 QAQQRRPYRRRRFPPYYMRRPYGRRPQYSNPPVQGEVMEGADNQGAGEQGRPVRQNMYRG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 QAQQRRPYRRRRFPPYYMRRPYGRRPQYSNPPVQGEVMEGADNQGAGEQGRPVRQNMYRG
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB5 YRPRFRRGPPRQRQPREDGNEEDKENQGDETQGQQPPQRRYRRNFNYRRRRPENPKPQDG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 YRPRFRRGPPRQRQPREDGNEEDKENQGDETQGQQPPQRRYRRNFNYRRRRPENPKPQDG
250 260 270 280 290 300
310 320
pF1KB5 KETKAADPPAENSSAPEAEQGGAE
::::::::::::::::::::::::
CCDS47 KETKAADPPAENSSAPEAEQGGAE
310 320
>>CCDS11098.1 YBX2 gene_id:51087|Hs108|chr17 (364 aa)
initn: 717 init1: 571 opt: 832 Z-score: 627.5 bits: 124.5 E(32554): 1.3e-28
Smith-Waterman score: 832; 48.1% identity (66.7% similar) in 324 aa overlap (10-316:53-352)
10 20 30
pF1KB5 MSSEAETQQPPAAPPAAPALSAADTKPGTTGSGAGSGGP
: :. :.::. . ::. .. : :: :
CCDS11 AGVVAVVVPVPAGEPQKGGGAGGGGGAASGPAAGTPSAPG----SRTPGNPAT-AVSGTP
30 40 50 60 70
40 50 60 70 80 90
pF1KB5 GGLTSAAPA--GGDKKVIATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPR
: :: .:: :.: .::::::::::::::::::::::::::::::::::.::::
CCDS11 -----APPARSQADKPVLAIQVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKRNNPR
80 90 100 110 120 130
100 110 120 130 140 150
pF1KB5 KYLRSVGDGETVEFDVVEGEKGAEAANVTGPGGVPVQGSKYAADRNHYRRY-PR--RRGP
:.:::::::::::::::::::::::.::::::::::.::.:: .: . ::. :: .:
CCDS11 KFLRSVGDGETVEFDVVEGEKGAEATNVTGPGGVPVKGSRYAPNRRKSRRFIPRPPSVAP
140 150 160 170 180 190
160 170 180 190 200 210
pF1KB5 PRNYQQNYQNSESGEKNEGSESAPEGQAQQRRPYRRRRFPPYYMRRPYGRRPQYSNPPVQ
: . .. .: ..: .. :: :: :: ::...:: . : :. :: :
CCDS11 PPMVAE-IPSAGTGPGSKGERAEDSGQ----RP-RRWCPPPFFYRRRFVRGPR---PPNQ
200 210 220 230 240
220 230 240 250 260
pF1KB5 GEVMEGADNQGAGEQGRPVRQNMYRG--------YRPRFRRG--P-PRQRQPREDGNEED
. .::.: : . :.. .. .: .:::.:: : :::. : :. :
CCDS11 QQPIEGTDRVEPKETA-PLEGHQQQGDERVPPPRFRPRYRRPFRPRPRQQPTTEGGDGET
250 260 270 280 290 300
270 280 290 300 310 320
pF1KB5 KENQGDETQGQQP-PQRRYRRNFNYRRRRPENPKPQDGKETKAADPPAENSSAPEAEQGG
: .:: ..:..: ::: : . ..::: . : ::.. . .: : ..:::
CCDS11 KPSQGP-ADGSRPEPQRPRNRPY-FQRRRQQAPGPQQAPGPR--QPAAPETSAPVNSGDP
310 320 330 340 350
pF1KB5 AE
CCDS11 TTTILE
360
>>CCDS8630.1 YBX3 gene_id:8531|Hs108|chr12 (372 aa)
initn: 1018 init1: 614 opt: 775 Z-score: 585.4 bits: 116.8 E(32554): 2.8e-26
Smith-Waterman score: 1088; 57.4% identity (71.6% similar) in 338 aa overlap (10-324:41-372)
10 20 30
pF1KB5 MSSEAETQQPPAAPPAAPALSAADTKPGTTGSGAGSGGP
: :: :: :: .: . :: .. :..:
CCDS86 TTTTLPQAPTEAAAAAPQDPAPKSPVGSGAPQAAAPA-PAAHVAGN-PGGDAAPAATGTA
20 30 40 50 60
40 50 60 70 80 90
pF1KB5 GGLTSAAPAGGD---KKVIATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNP
.. . :. ::.. :::.:::::::::::::::::::::::::::::::::::::::::
CCDS86 AAASLATAAGSEDAEKKVLATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNP
70 80 90 100 110 120
100 110 120 130 140 150
pF1KB5 RKYLRSVGDGETVEFDVVEGEKGAEAANVTGPGGVPVQGSKYAADRNHYRR--YPRRRGP
:::::::::::::::::::::::::::::::: ::::.::.::::: .::: : :::::
CCDS86 RKYLRSVGDGETVEFDVVEGEKGAEAANVTGPDGVPVEGSRYAADRRRYRRGYYGRRRGP
130 140 150 160 170 180
160 170 180 190 200
pF1KB5 PRNYQQNYQNSESGEKNEGSESAPEGQ-----AQQRRP-----YRRRRFPPYYMRRPYGR
:::: . .. :: .. . : . : : ::: ::.::::::.. . . :
CCDS86 PRNYAGEEEEEGSGSSEGFDPPATDRQFSGARNQLRRPQYRPQYRQRRFPPYHVGQTFDR
190 200 210 220 230 240
210 220 230 240 250
pF1KB5 RPQYSNPP--VQ-GEVMEGADN--QGAGEQGRPVRQNMYRGYRPRFR-RGPPRQRQPRED
: . : .: ::. : :. .:: :: ::..: ::::.: ::::: :
CCDS86 RSRVLPHPNRIQAGEIGEMKDGVPEGAQLQG-PVHRNPT--YRPRYRSRGPPRPRPAPAV
250 260 270 280 290 300
260 270 280 290 300 310
pF1KB5 GNEEDKENQGDETQGQQPPQRR-YRRNFNYRRR-RPENPKPQDGKETKAADPPAENSSAP
:. :::::: . .:: :: ::: .::::: :: : :::::.::.. :.:: ::
CCDS86 GEAEDKENQQATSGPNQPSVRRGYRRPYNYRRRPRPPNAPSQDGKEAKAGEAPTENP-AP
310 320 330 340 350 360
320
pF1KB5 EAEQGGAE
..:..::
CCDS86 PTQQSSAE
370
>>CCDS44831.1 YBX3 gene_id:8531|Hs108|chr12 (303 aa)
initn: 903 init1: 614 opt: 769 Z-score: 582.1 bits: 115.9 E(32554): 4.2e-26
Smith-Waterman score: 915; 53.9% identity (65.3% similar) in 323 aa overlap (10-324:41-303)
10 20 30
pF1KB5 MSSEAETQQPPAAPPAAPALSAADTKPGTTGSGAGSGGP
: :: :: :: .: . :: .. :..:
CCDS44 TTTTLPQAPTEAAAAAPQDPAPKSPVGSGAPQAAAPA-PAAHVAGN-PGGDAAPAATGTA
20 30 40 50 60
40 50 60 70 80 90
pF1KB5 GGLTSAAPAGGD---KKVIATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNP
.. . :. ::.. :::.:::::::::::::::::::::::::::::::::::::::::
CCDS44 AAASLATAAGSEDAEKKVLATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNP
70 80 90 100 110 120
100 110 120 130 140 150
pF1KB5 RKYLRSVGDGETVEFDVVEGEKGAEAANVTGPGGVPVQGSKYAADRNHYRR--YPRRRGP
:::::::::::::::::::::::::::::::: ::::.::.::::: .::: : :::::
CCDS44 RKYLRSVGDGETVEFDVVEGEKGAEAANVTGPDGVPVEGSRYAADRRRYRRGYYGRRRGP
130 140 150 160 170 180
160 170 180 190 200 210
pF1KB5 PRNYQQNYQNSESGEKNEGSESAPEGQAQQRRPYRRRRFPPYYMRRPYGRRPQYSNPPVQ
::: .:: .: ....::: :: . : .: ::
CCDS44 PRN---------AGEIGEMKDGVPEG-AQLQGPVHR-------------------NPT--
190 200 210
220 230 240 250 260 270
pF1KB5 GEVMEGADNQGAGEQGRPVRQNMYRGYRPRFR-RGPPRQRQPREDGNEEDKENQGDETQG
::::.: ::::: : :. :::::: .
CCDS44 --------------------------YRPRYRSRGPPRPRPAPAVGEAEDKENQQATSGP
220 230 240 250
280 290 300 310 320
pF1KB5 QQPPQRR-YRRNFNYRRR-RPENPKPQDGKETKAADPPAENSSAPEAEQGGAE
.:: :: ::: .::::: :: : :::::.::.. :.:: :: ..:..::
CCDS44 NQPSVRRGYRRPYNYRRRPRPPNAPSQDGKEAKAGEAPTENP-APPTQQSSAE
260 270 280 290 300
324 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 16:26:35 2016 done: Thu Nov 3 16:26:36 2016
Total Scan time: 3.090 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]