FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB5224, 241 aa
  1>>>pF1KB5224 241 - 241 aa - 241 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.6242+/-0.000793; mu= 12.6830+/- 0.048
 mean_var=69.4823+/-13.404, 0's: 0 Z-trim(108.6): 10  B-trim: 10 in 1/48
 Lambda= 0.153864
 statistics sampled from 10325 (10331) to 10325 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.703), E-opt: 0.2 (0.317), width:  16
 Scan time:  2.360

The best scores are:                                      opt bits E(32554)
CCDS13747.1 BID gene_id:637|Hs108|chr22            ( 241) 1601 364.0 4.9e-101
CCDS13748.1 BID gene_id:637|Hs108|chr22            ( 195) 1271 290.7 4.6e-79
CCDS13749.1 BID gene_id:637|Hs108|chr22            (  99)  623 146.8 5.1e-36


>>CCDS13747.1 BID gene_id:637|Hs108|chr22                 (241 aa)
 initn: 1601 init1: 1601 opt: 1601  Z-score: 1927.4  bits: 364.0 E(32554): 4.9e-101
Smith-Waterman score: 1601; 100.0% identity (100.0% similar) in 241 aa overlap (1-241:1-241)

               10        20        30        40        50        60
pF1KB5 MCSGAGVMMARWAARGRAGWRSTVRILSPLGHCEPGVSRSCRAAQAMDCEVNNGSSLRDE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MCSGAGVMMARWAARGRAGWRSTVRILSPLGHCEPGVSRSCRAAQAMDCEVNNGSSLRDE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 CITNLLVFGFLQSCSDNSFRRELDALGHELPVLAPQWEGYDELQTDGNRSSHSRLGRIEA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 CITNLLVFGFLQSCSDNSFRRELDALGHELPVLAPQWEGYDELQTDGNRSSHSRLGRIEA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB5 DSESQEDIIRNIARHLAQVGDSMDRSIPPGLVNGLALQLRNTSRSEEDRNRDLATALEQL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 DSESQEDIIRNIARHLAQVGDSMDRSIPPGLVNGLALQLRNTSRSEEDRNRDLATALEQL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB5 LQAYPRDMEKEKTMLVLALLLAKKVASHTPSLLRDVFHTTVNFINQNLRTYVRSLARNGM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 LQAYPRDMEKEKTMLVLALLLAKKVASHTPSLLRDVFHTTVNFINQNLRTYVRSLARNGM
              190       200       210       220       230       240

        
pF1KB5 D
       :
CCDS13 D
        

>>CCDS13748.1 BID gene_id:637|Hs108|chr22                 (195 aa)
 initn: 1271 init1: 1271 opt: 1271  Z-score: 1532.9  bits: 290.7 E(32554): 4.6e-79
Smith-Waterman score: 1271; 100.0% identity (100.0% similar) in 195 aa overlap (47-241:1-195)

         20        30        40        50        60        70      
pF1KB5 RAGWRSTVRILSPLGHCEPGVSRSCRAAQAMDCEVNNGSSLRDECITNLLVFGFLQSCSD
                                     ::::::::::::::::::::::::::::::
CCDS13                               MDCEVNNGSSLRDECITNLLVFGFLQSCSD
                                             10        20        30

         80        90       100       110       120       130      
pF1KB5 NSFRRELDALGHELPVLAPQWEGYDELQTDGNRSSHSRLGRIEADSESQEDIIRNIARHL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 NSFRRELDALGHELPVLAPQWEGYDELQTDGNRSSHSRLGRIEADSESQEDIIRNIARHL
               40        50        60        70        80        90

        140       150       160       170       180       190      
pF1KB5 AQVGDSMDRSIPPGLVNGLALQLRNTSRSEEDRNRDLATALEQLLQAYPRDMEKEKTMLV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 AQVGDSMDRSIPPGLVNGLALQLRNTSRSEEDRNRDLATALEQLLQAYPRDMEKEKTMLV
              100       110       120       130       140       150

        200       210       220       230       240 
pF1KB5 LALLLAKKVASHTPSLLRDVFHTTVNFINQNLRTYVRSLARNGMD
       :::::::::::::::::::::::::::::::::::::::::::::
CCDS13 LALLLAKKVASHTPSLLRDVFHTTVNFINQNLRTYVRSLARNGMD
              160       170       180       190     

>>CCDS13749.1 BID gene_id:637|Hs108|chr22                 (99 aa)
 initn: 623 init1: 623 opt: 623  Z-score: 760.1  bits: 146.8 E(32554): 5.1e-36
Smith-Waterman score: 623; 100.0% identity (100.0% similar) in 99 aa overlap (143-241:1-99)

            120       130       140       150       160       170  
pF1KB5 SRLGRIEADSESQEDIIRNIARHLAQVGDSMDRSIPPGLVNGLALQLRNTSRSEEDRNRD
                                     ::::::::::::::::::::::::::::::
CCDS13                               MDRSIPPGLVNGLALQLRNTSRSEEDRNRD
                                             10        20        30

            180       190       200       210       220       230  
pF1KB5 LATALEQLLQAYPRDMEKEKTMLVLALLLAKKVASHTPSLLRDVFHTTVNFINQNLRTYV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 LATALEQLLQAYPRDMEKEKTMLVLALLLAKKVASHTPSLLRDVFHTTVNFINQNLRTYV
               40        50        60        70        80        90

            240 
pF1KB5 RSLARNGMD
       :::::::::
CCDS13 RSLARNGMD
                




241 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 16:22:14 2016 done: Thu Nov  3 16:22:14 2016
 Total Scan time:  2.360 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]