Result of FASTA (ccds) for
pF1KB5221
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB5221, 332 aa
1>>>pF1KB5221 332 - 332 aa - 332 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.8119+/-0.00106; mu= 12.8084+/- 0.064
mean_var=67.5852+/-14.120, 0's: 0 Z-trim(102.8): 30 B-trim: 0 in 0/48
Lambda= 0.156009
statistics sampled from 7074 (7095) to 7074 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.587), E-opt: 0.2 (0.218), width: 16
Scan time: 2.210
The best scores are: opt bits E(32554)
CCDS7839.1 LDHA gene_id:3939|Hs108|chr11 ( 332) 2167 497.0 8.5e-141
CCDS53609.1 LDHA gene_id:3939|Hs108|chr11 ( 361) 2167 497.0 9.2e-141
CCDS7840.1 LDHC gene_id:3948|Hs108|chr11 ( 332) 1745 402.1 3.3e-112
CCDS8691.1 LDHB gene_id:3945|Hs108|chr12 ( 334) 1720 396.4 1.7e-110
CCDS7841.1 LDHAL6A gene_id:160287|Hs108|chr11 ( 332) 1679 387.2 9.9e-108
CCDS10171.1 LDHAL6B gene_id:92483|Hs108|chr15 ( 381) 1653 381.4 6.5e-106
CCDS53611.1 LDHA gene_id:3939|Hs108|chr11 ( 241) 1561 360.6 7.3e-100
CCDS53610.1 LDHA gene_id:3939|Hs108|chr11 ( 274) 1514 350.0 1.3e-96
CCDS44549.1 LDHA gene_id:3939|Hs108|chr11 ( 274) 1306 303.2 1.6e-82
CCDS58124.1 UEVLD gene_id:55293|Hs108|chr11 ( 449) 500 121.9 9.9e-28
CCDS41624.1 UEVLD gene_id:55293|Hs108|chr11 ( 471) 500 121.9 1e-27
CCDS58122.1 UEVLD gene_id:55293|Hs108|chr11 ( 341) 497 121.2 1.2e-27
CCDS58123.1 UEVLD gene_id:55293|Hs108|chr11 ( 357) 497 121.2 1.3e-27
CCDS7843.1 UEVLD gene_id:55293|Hs108|chr11 ( 379) 497 121.2 1.4e-27
>>CCDS7839.1 LDHA gene_id:3939|Hs108|chr11 (332 aa)
initn: 2167 init1: 2167 opt: 2167 Z-score: 2641.2 bits: 497.0 E(32554): 8.5e-141
Smith-Waterman score: 2167; 100.0% identity (100.0% similar) in 332 aa overlap (1-332:1-332)
10 20 30 40 50 60
pF1KB5 MATLKDQLIYNLLKEEQTPQNKITVVGVGAVGMACAISILMKDLADELALVDVIEDKLKG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 MATLKDQLIYNLLKEEQTPQNKITVVGVGAVGMACAISILMKDLADELALVDVIEDKLKG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 EMMDLQHGSLFLRTPKIVSGKDYNVTANSKLVIITAGARQQEGESRLNLVQRNVNIFKFI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 EMMDLQHGSLFLRTPKIVSGKDYNVTANSKLVIITAGARQQEGESRLNLVQRNVNIFKFI
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB5 IPNVVKYSPNCKLLIVSNPVDILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 IPNVVKYSPNCKLLIVSNPVDILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGV
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB5 HPLSCHGWVLGEHGDSSVPVWSGMNVAGVSLKTLHPDLGTDKDKEQWKEVHKQVVESAYE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 HPLSCHGWVLGEHGDSSVPVWSGMNVAGVSLKTLHPDLGTDKDKEQWKEVHKQVVESAYE
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB5 VIKLKGYTSWAIGLSVADLAESIMKNLRRVHPVSTMIKGLYGIKDDVFLSVPCILGQNGI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 VIKLKGYTSWAIGLSVADLAESIMKNLRRVHPVSTMIKGLYGIKDDVFLSVPCILGQNGI
250 260 270 280 290 300
310 320 330
pF1KB5 SDLVKVTLTSEEEARLKKSADTLWGIQKELQF
::::::::::::::::::::::::::::::::
CCDS78 SDLVKVTLTSEEEARLKKSADTLWGIQKELQF
310 320 330
>>CCDS53609.1 LDHA gene_id:3939|Hs108|chr11 (361 aa)
initn: 2167 init1: 2167 opt: 2167 Z-score: 2640.6 bits: 497.0 E(32554): 9.2e-141
Smith-Waterman score: 2167; 100.0% identity (100.0% similar) in 332 aa overlap (1-332:30-361)
10 20 30
pF1KB5 MATLKDQLIYNLLKEEQTPQNKITVVGVGAV
:::::::::::::::::::::::::::::::
CCDS53 MGEPSGGYTYTQTSIFLFHAKIPFGSKSNMATLKDQLIYNLLKEEQTPQNKITVVGVGAV
10 20 30 40 50 60
40 50 60 70 80 90
pF1KB5 GMACAISILMKDLADELALVDVIEDKLKGEMMDLQHGSLFLRTPKIVSGKDYNVTANSKL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 GMACAISILMKDLADELALVDVIEDKLKGEMMDLQHGSLFLRTPKIVSGKDYNVTANSKL
70 80 90 100 110 120
100 110 120 130 140 150
pF1KB5 VIITAGARQQEGESRLNLVQRNVNIFKFIIPNVVKYSPNCKLLIVSNPVDILTYVAWKIS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 VIITAGARQQEGESRLNLVQRNVNIFKFIIPNVVKYSPNCKLLIVSNPVDILTYVAWKIS
130 140 150 160 170 180
160 170 180 190 200 210
pF1KB5 GFPKNRVIGSGCNLDSARFRYLMGERLGVHPLSCHGWVLGEHGDSSVPVWSGMNVAGVSL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 GFPKNRVIGSGCNLDSARFRYLMGERLGVHPLSCHGWVLGEHGDSSVPVWSGMNVAGVSL
190 200 210 220 230 240
220 230 240 250 260 270
pF1KB5 KTLHPDLGTDKDKEQWKEVHKQVVESAYEVIKLKGYTSWAIGLSVADLAESIMKNLRRVH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 KTLHPDLGTDKDKEQWKEVHKQVVESAYEVIKLKGYTSWAIGLSVADLAESIMKNLRRVH
250 260 270 280 290 300
280 290 300 310 320 330
pF1KB5 PVSTMIKGLYGIKDDVFLSVPCILGQNGISDLVKVTLTSEEEARLKKSADTLWGIQKELQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 PVSTMIKGLYGIKDDVFLSVPCILGQNGISDLVKVTLTSEEEARLKKSADTLWGIQKELQ
310 320 330 340 350 360
pF1KB5 F
:
CCDS53 F
>>CCDS7840.1 LDHC gene_id:3948|Hs108|chr11 (332 aa)
initn: 1743 init1: 1723 opt: 1745 Z-score: 2127.9 bits: 402.1 E(32554): 3.3e-112
Smith-Waterman score: 1745; 75.3% identity (94.3% similar) in 332 aa overlap (1-332:1-332)
10 20 30 40 50 60
pF1KB5 MATLKDQLIYNLLKEEQTPQNKITVVGVGAVGMACAISILMKDLADELALVDVIEDKLKG
:.:.:.::: .:...... : :::.::.::::::::::::.:::::::::::: :::::
CCDS78 MSTVKEQLIEKLIEDDENSQCKITIVGTGAVGMACAISILLKDLADELALVDVALDKLKG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 EMMDLQHGSLFLRTPKIVSGKDYNVTANSKLVIITAGARQQEGESRLNLVQRNVNIFKFI
:::::::::::. : ::.:::::.:.:::..::.::::::::::.:: :::::: :.: :
CCDS78 EMMDLQHGSLFFSTSKITSGKDYSVSANSRIVIVTAGARQQEGETRLALVQRNVAIMKSI
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB5 IPNVVKYSPNCKLLIVSNPVDILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGV
:: .:.:::.::.:.::::::::::..:::::.: .:::::::::::::::::.::.:::
CCDS78 IPAIVHYSPDCKILVVSNPVDILTYIVWKISGLPVTRVIGSGCNLDSARFRYLIGEKLGV
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB5 HPLSCHGWVLGEHGDSSVPVWSGMNVAGVSLKTLHPDLGTDKDKEQWKEVHKQVVESAYE
:: :::::..:::::::::.:::.:::::.:::: : ::::.:::.::..::::..::::
CCDS78 HPTSCHGWIIGEHGDSSVPLWSGVNVAGVALKTLDPKLGTDSDKEHWKNIHKQVIQSAYE
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB5 VIKLKGYTSWAIGLSVADLAESIMKNLRRVHPVSTMIKGLYGIKDDVFLSVPCILGQNGI
.::::::::::::::: ::. ::.::::::::::::.:::::::...:::.::.::.::.
CCDS78 IIKLKGYTSWAIGLSVMDLVGSILKNLRRVHPVSTMVKGLYGIKEELFLSIPCVLGRNGV
250 260 270 280 290 300
310 320 330
pF1KB5 SDLVKVTLTSEEEARLKKSADTLWGIQKELQF
::.::..:.::::: .::::.:::.:::.: :
CCDS78 SDVVKINLNSEEEALFKKSAETLWNIQKDLIF
310 320 330
>>CCDS8691.1 LDHB gene_id:3945|Hs108|chr12 (334 aa)
initn: 1712 init1: 1668 opt: 1720 Z-score: 2097.4 bits: 396.4 E(32554): 1.7e-110
Smith-Waterman score: 1720; 75.6% identity (93.7% similar) in 332 aa overlap (1-331:1-332)
10 20 30 40 50
pF1KB5 MATLKDQLIYNLLKEEQT-PQNKITVVGVGAVGMACAISILMKDLADELALVDVIEDKLK
:::::..:: . .:: : :.::::::::: :::::::::: :.::::::::::.:::::
CCDS86 MATLKEKLIAPVAEEEATVPNNKITVVGVGQVGMACAISILGKSLADELALVDVLEDKLK
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB5 GEMMDLQHGSLFLRTPKIVSGKDYNVTANSKLVIITAGARQQEGESRLNLVQRNVNIFKF
:::::::::::::.:::::. :::.::::::.:..:::.:::::::::::::::::.:::
CCDS86 GEMMDLQHGSLFLQTPKIVADKDYSVTANSKIVVVTAGVRQQEGESRLNLVQRNVNVFKF
70 80 90 100 110 120
120 130 140 150 160 170
pF1KB5 IIPNVVKYSPNCKLLIVSNPVDILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLG
:::..:::::.: ...:::::::::::.::.::.::.::::::::::::::::::.:.::
CCDS86 IIPQIVKYSPDCIIIVVSNPVDILTYVTWKLSGLPKHRVIGSGCNLDSARFRYLMAEKLG
130 140 150 160 170 180
180 190 200 210 220 230
pF1KB5 VHPLSCHGWVLGEHGDSSVPVWSGMNVAGVSLKTLHPDLGTDKDKEQWKEVHKQVVESAY
.:: :::::.::::::::: ::::.:::::::. :.:..:::.:.:.::::::.::::::
CCDS86 IHPSSCHGWILGEHGDSSVAVWSGVNVAGVSLQELNPEMGTDNDSENWKEVHKMVVESAY
190 200 210 220 230 240
240 250 260 270 280 290
pF1KB5 EVIKLKGYTSWAIGLSVADLAESIMKNLRRVHPVSTMIKGLYGIKDDVFLSVPCILGQNG
:::::::::.:::::::::: ::..::: :.::::::.::.:::...::::.::::. :
CCDS86 EVIKLKGYTNWAIGLSVADLIESMLKNLSRIHPVSTMVKGMYGIENEVFLSLPCILNARG
250 260 270 280 290 300
300 310 320 330
pF1KB5 ISDLVKVTLTSEEEARLKKSADTLWGIQKELQF
...... : ..: :.::::::::: :::.:.
CCDS86 LTSVINQKLKDDEVAQLKKSADTLWDIQKDLKDL
310 320 330
>>CCDS7841.1 LDHAL6A gene_id:160287|Hs108|chr11 (332 aa)
initn: 1679 init1: 1679 opt: 1679 Z-score: 2047.6 bits: 387.2 E(32554): 9.9e-108
Smith-Waterman score: 1679; 73.5% identity (92.8% similar) in 332 aa overlap (1-332:1-332)
10 20 30 40 50 60
pF1KB5 MATLKDQLIYNLLKEEQTPQNKITVVGVGAVGMACAISILMKDLADELALVDVIEDKLKG
:::.:..:: :. .:: .:::..::.:.::.:::::::.: :.:::.:::: : ::::
CCDS78 MATIKSELIKNFAEEEAIHHNKISIVGTGSVGVACAISILLKGLSDELVLVDVDEGKLKG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 EMMDLQHGSLFLRTPKIVSGKDYNVTANSKLVIITAGARQQEGESRLNLVQRNVNIFKFI
: ::::::: :.. :.:::.::: :::::.::::::::::..::.::.::::::.:::..
CCDS78 ETMDLQHGSPFMKMPNIVSSKDYLVTANSNLVIITAGARQKKGETRLDLVQRNVSIFKLM
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB5 IPNVVKYSPNCKLLIVSNPVDILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGV
:::...:::.::::::.::::::::::::.::::::::::::::::::::::..:.:::.
CCDS78 IPNITQYSPHCKLLIVTNPVDILTYVAWKLSGFPKNRVIGSGCNLDSARFRYFIGQRLGI
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB5 HPLSCHGWVLGEHGDSSVPVWSGMNVAGVSLKTLHPDLGTDKDKEQWKEVHKQVVESAYE
: :::: .::::::::::::::.:.::: :: :.::.::::: :::..:::.:. :.::
CCDS78 HSESCHGLILGEHGDSSVPVWSGVNIAGVPLKDLNPDIGTDKDPEQWENVHKKVISSGYE
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB5 VIKLKGYTSWAIGLSVADLAESIMKNLRRVHPVSTMIKGLYGIKDDVFLSVPCILGQNGI
..:.::::::.:.::::::.:::.:::::::::::. ::::::..:.:::::::::.:::
CCDS78 MVKMKGYTSWGISLSVADLTESILKNLRRVHPVSTLSKGLYGINEDIFLSVPCILGENGI
250 260 270 280 290 300
310 320 330
pF1KB5 SDLVKVTLTSEEEARLKKSADTLWGIQKELQF
.::.:: :: :::: :.:::.::: :::::..
CCDS78 TDLIKVKLTLEEEACLQKSAETLWEIQKELKL
310 320 330
>>CCDS10171.1 LDHAL6B gene_id:92483|Hs108|chr15 (381 aa)
initn: 1653 init1: 1653 opt: 1653 Z-score: 2015.0 bits: 381.4 E(32554): 6.5e-106
Smith-Waterman score: 1653; 71.1% identity (91.9% similar) in 332 aa overlap (1-332:50-381)
10 20 30
pF1KB5 MATLKDQLIYNLLKEEQTPQNKITVVGVGA
:::.:..:: . .:. . ..:....:.:.
CCDS10 NFLCLGMALCPRQATRIPLNGTWLFTPVSKMATVKSELIERFTSEKPVHHSKVSIIGTGS
20 30 40 50 60 70
40 50 60 70 80 90
pF1KB5 VGMACAISILMKDLADELALVDVIEDKLKGEMMDLQHGSLFLRTPKIVSGKDYNVTANSK
::::::::::.: :.:::::::. ::::::: ::::::: : . :.:: .::: :::::.
CCDS10 VGMACAISILLKGLSDELALVDLDEDKLKGETMDLQHGSPFTKMPNIVCSKDYFVTANSN
80 90 100 110 120 130
100 110 120 130 140 150
pF1KB5 LVIITAGARQQEGESRLNLVQRNVNIFKFIIPNVVKYSPNCKLLIVSNPVDILTYVAWKI
::::::::::..::.::::::::: :::..: ..:.:::.:::.:::::::::::::::.
CCDS10 LVIITAGARQEKGETRLNLVQRNVAIFKLMISSIVQYSPHCKLIIVSNPVDILTYVAWKL
140 150 160 170 180 190
160 170 180 190 200 210
pF1KB5 SGFPKNRVIGSGCNLDSARFRYLMGERLGVHPLSCHGWVLGEHGDSSVPVWSGMNVAGVS
:.:::::.::::::::.::::.:.:..::.: :::::.::::::::::::::.:.:::
CCDS10 SAFPKNRIIGSGCNLDTARFRFLIGQKLGIHSESCHGWILGEHGDSSVPVWSGVNIAGVP
200 210 220 230 240 250
220 230 240 250 260 270
pF1KB5 LKTLHPDLGTDKDKEQWKEVHKQVVESAYEVIKLKGYTSWAIGLSVADLAESIMKNLRRV
:: :. :.::::: ::::.:::.:. .:::.::.:::::::::::::::.:::.:::::.
CCDS10 LKDLNSDIGTDKDPEQWKNVHKEVTATAYEIIKMKGYTSWAIGLSVADLTESILKNLRRI
260 270 280 290 300 310
280 290 300 310 320 330
pF1KB5 HPVSTMIKGLYGIKDDVFLSVPCILGQNGISDLVKVTLTSEEEARLKKSADTLWGIQKEL
:::::.::::::: ..::::.:::::.:::..:.:. :: ::::.::::: ::: ::..:
CCDS10 HPVSTIIKGLYGIDEEVFLSIPCILGENGITNLIKIKLTPEEEAHLKKSAKTLWEIQNKL
320 330 340 350 360 370
pF1KB5 QF
..
CCDS10 KL
380
>>CCDS53611.1 LDHA gene_id:3939|Hs108|chr11 (241 aa)
initn: 1561 init1: 1561 opt: 1561 Z-score: 1906.3 bits: 360.6 E(32554): 7.3e-100
Smith-Waterman score: 1561; 98.7% identity (99.6% similar) in 239 aa overlap (1-239:1-239)
10 20 30 40 50 60
pF1KB5 MATLKDQLIYNLLKEEQTPQNKITVVGVGAVGMACAISILMKDLADELALVDVIEDKLKG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 MATLKDQLIYNLLKEEQTPQNKITVVGVGAVGMACAISILMKDLADELALVDVIEDKLKG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 EMMDLQHGSLFLRTPKIVSGKDYNVTANSKLVIITAGARQQEGESRLNLVQRNVNIFKFI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 EMMDLQHGSLFLRTPKIVSGKDYNVTANSKLVIITAGARQQEGESRLNLVQRNVNIFKFI
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB5 IPNVVKYSPNCKLLIVSNPVDILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 IPNVVKYSPNCKLLIVSNPVDILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGV
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB5 HPLSCHGWVLGEHGDSSVPVWSGMNVAGVSLKTLHPDLGTDKDKEQWKEVHKQVVESAYE
:::::::::::::::::::::::::::::::::::::::::::::::::::::::: ..
CCDS53 HPLSCHGWVLGEHGDSSVPVWSGMNVAGVSLKTLHPDLGTDKDKEQWKEVHKQVVERVFT
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB5 VIKLKGYTSWAIGLSVADLAESIMKNLRRVHPVSTMIKGLYGIKDDVFLSVPCILGQNGI
CCDS53 E
>>CCDS53610.1 LDHA gene_id:3939|Hs108|chr11 (274 aa)
initn: 1514 init1: 1514 opt: 1514 Z-score: 1848.2 bits: 350.0 E(32554): 1.3e-96
Smith-Waterman score: 1514; 100.0% identity (100.0% similar) in 229 aa overlap (1-229:1-229)
10 20 30 40 50 60
pF1KB5 MATLKDQLIYNLLKEEQTPQNKITVVGVGAVGMACAISILMKDLADELALVDVIEDKLKG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 MATLKDQLIYNLLKEEQTPQNKITVVGVGAVGMACAISILMKDLADELALVDVIEDKLKG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 EMMDLQHGSLFLRTPKIVSGKDYNVTANSKLVIITAGARQQEGESRLNLVQRNVNIFKFI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 EMMDLQHGSLFLRTPKIVSGKDYNVTANSKLVIITAGARQQEGESRLNLVQRNVNIFKFI
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB5 IPNVVKYSPNCKLLIVSNPVDILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 IPNVVKYSPNCKLLIVSNPVDILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGV
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB5 HPLSCHGWVLGEHGDSSVPVWSGMNVAGVSLKTLHPDLGTDKDKEQWKEVHKQVVESAYE
:::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 HPLSCHGWVLGEHGDSSVPVWSGMNVAGVSLKTLHPDLGTDKDKEQWKECRYTLGDPKGA
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB5 VIKLKGYTSWAIGLSVADLAESIMKNLRRVHPVSTMIKGLYGIKDDVFLSVPCILGQNGI
CCDS53 AILKSSDVISFHCLGYNRILGGGCACCPFYLICD
250 260 270
>>CCDS44549.1 LDHA gene_id:3939|Hs108|chr11 (274 aa)
initn: 1306 init1: 1306 opt: 1306 Z-score: 1595.2 bits: 303.2 E(32554): 1.6e-82
Smith-Waterman score: 1673; 82.5% identity (82.5% similar) in 332 aa overlap (1-332:1-274)
10 20 30 40 50 60
pF1KB5 MATLKDQLIYNLLKEEQTPQNKITVVGVGAVGMACAISILMKDLADELALVDVIEDKLKG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 MATLKDQLIYNLLKEEQTPQNKITVVGVGAVGMACAISILMKDLADELALVDVIEDKLKG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 EMMDLQHGSLFLRTPKIVSGKDYNVTANSKLVIITAGARQQEGESRLNLVQRNVNIFKFI
:::::::::::::::::::::
CCDS44 EMMDLQHGSLFLRTPKIVSGK---------------------------------------
70 80
130 140 150 160 170 180
pF1KB5 IPNVVKYSPNCKLLIVSNPVDILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGV
:::::::::::::::::::::::::::::::::::::::::
CCDS44 -------------------VDILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGV
90 100 110 120
190 200 210 220 230 240
pF1KB5 HPLSCHGWVLGEHGDSSVPVWSGMNVAGVSLKTLHPDLGTDKDKEQWKEVHKQVVESAYE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 HPLSCHGWVLGEHGDSSVPVWSGMNVAGVSLKTLHPDLGTDKDKEQWKEVHKQVVESAYE
130 140 150 160 170 180
250 260 270 280 290 300
pF1KB5 VIKLKGYTSWAIGLSVADLAESIMKNLRRVHPVSTMIKGLYGIKDDVFLSVPCILGQNGI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 VIKLKGYTSWAIGLSVADLAESIMKNLRRVHPVSTMIKGLYGIKDDVFLSVPCILGQNGI
190 200 210 220 230 240
310 320 330
pF1KB5 SDLVKVTLTSEEEARLKKSADTLWGIQKELQF
::::::::::::::::::::::::::::::::
CCDS44 SDLVKVTLTSEEEARLKKSADTLWGIQKELQF
250 260 270
>>CCDS58124.1 UEVLD gene_id:55293|Hs108|chr11 (449 aa)
initn: 748 init1: 334 opt: 500 Z-score: 611.3 bits: 121.9 E(32554): 9.9e-28
Smith-Waterman score: 758; 40.3% identity (73.3% similar) in 318 aa overlap (16-332:156-449)
10 20 30 40
pF1KB5 MATLKDQLIYNLLKEEQTPQNKITVVGVGAVGMACAISILMKDLA
:. ::::::: : .:.::...: : .:
CCDS58 DEARQVDLLAYIAKITEGVSDTNSKSWANHENKTVNKITVVGGGELGIACTLAISAKGIA
130 140 150 160 170 180
50 60 70 80 90 100
pF1KB5 DELALVDVIEDKLKGEMMDLQHGSLFLRTPKIVSGKDYNVTANSKLVIITAGARQQEGES
:.:.:.:. : :: :::. .. :.. .:: ...:.::.::.:... ..:
CCDS58 DRLVLLDLSEGT-KGATMDLE----IFNLPNVEISKDLSASAHSKVVIFTVNS-LGSSQS
190 200 210 220 230
110 120 130 140 150 160
pF1KB5 RLNLVQRNVNIFKFIIPNVVKYSPNCKLLIVSNPVDILTYVAWKISGFPKNRVIGSGCNL
:..:: ::..:. ..: . .:: . ::..:.::.:.:::.::.: :: ::::: ::::
CCDS58 YLDVVQSNVDMFRALVPALGHYSQHSVLLVASQPVEIMTYVTWKLSTFPANRVIGIGCNL
240 250 260 270 280 290
170 180 190 200 210 220
pF1KB5 DSARFRYLMGERLGVHPLSCHGWVLGEHGDSSVPVWSGMNVAGVSLKTLHPDLGTDKDKE
:: :..:.. . : .. . . ::.::.:...: .:::.. . :: : .
CCDS58 DSQRLQYIITNVLKAQTSGKEVWVIGEQGEDKVLTWSGQEEV-VS----HTS--------
300 310 320 330 340
230 240 250 260 270 280
pF1KB5 QWKEVHKQVVESAYEVIKLKGYTSWAIGLSVADLAESIMKNLRRVHPVSTMIKGLYGIKD
. :. . :.:....:: ::..::::::...::..: ..:: ::.. :: : :..
CCDS58 -----QVQLSNRAMELLRVKGQRSWSVGLSVADMVDSIVNNKKKVHSVSALAKGYYDINS
350 360 370 380 390 400
290 300 310 320 330
pF1KB5 DVFLSVPCILGQNGISDLVKVTLTSEE-EARLKKSADTLWGIQKELQF
.::::.::::: ::.:...:.:: . .:..::... ..:..:..
CCDS58 EVFLSLPCILGTNGVSEVIKTTLKEDTVTEKLQSSASSIHSLQQQLKL
410 420 430 440
332 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 03:28:25 2016 done: Fri Nov 4 03:28:25 2016
Total Scan time: 2.210 Total Display time: 0.030
Function used was FASTA [36.3.4 Apr, 2011]