Result of FASTA (ccds) for
pF1KB5213
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB5213, 145 aa
1>>>pF1KB5213 145 - 145 aa - 145 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 4.9743+/-0.000539; mu= 13.0407+/- 0.033
mean_var=57.6441+/-11.450, 0's: 0 Z-trim(112.6): 52 B-trim: 0 in 0/51
Lambda= 0.168926
statistics sampled from 13328 (13380) to 13328 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.79), E-opt: 0.2 (0.411), width: 16
Scan time: 1.660
The best scores are: opt bits E(32554)
CCDS43738.1 UBE2V2 gene_id:7336|Hs108|chr8 ( 145) 977 245.4 9.4e-66
CCDS13424.1 UBE2V1 gene_id:387522|Hs108|chr20 ( 370) 892 224.9 3.5e-59
CCDS33483.1 UBE2V1 gene_id:7335|Hs108|chr20 ( 147) 886 223.2 4.5e-59
CCDS13426.1 UBE2V1 gene_id:7335|Hs108|chr20 ( 170) 881 222.0 1.2e-58
CCDS74740.1 UBE2V1 gene_id:7335|Hs108|chr20 ( 105) 642 163.7 2.7e-41
CCDS13427.1 UBE2V1 gene_id:7335|Hs108|chr20 ( 103) 540 138.8 8.1e-34
CCDS58775.1 UBE2V1 gene_id:7335|Hs108|chr20 ( 105) 355 93.7 3.1e-20
>>CCDS43738.1 UBE2V2 gene_id:7336|Hs108|chr8 (145 aa)
initn: 977 init1: 977 opt: 977 Z-score: 1294.0 bits: 245.4 E(32554): 9.4e-66
Smith-Waterman score: 977; 100.0% identity (100.0% similar) in 145 aa overlap (1-145:1-145)
10 20 30 40 50 60
pF1KB5 MAVSTGVKVPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTNYEN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 MAVSTGVKVPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTNYEN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 RIYSLKVECGPKYPEAPPSVRFVTKINMNGINNSSGMVDARSIPVLAKWQNSYSIKVVLQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 RIYSLKVECGPKYPEAPPSVRFVTKINMNGINNSSGMVDARSIPVLAKWQNSYSIKVVLQ
70 80 90 100 110 120
130 140
pF1KB5 ELRRLMMSKENMKLPQPPEGQTYNN
:::::::::::::::::::::::::
CCDS43 ELRRLMMSKENMKLPQPPEGQTYNN
130 140
>>CCDS13424.1 UBE2V1 gene_id:387522|Hs108|chr20 (370 aa)
initn: 906 init1: 886 opt: 892 Z-score: 1175.9 bits: 224.9 E(32554): 3.5e-59
Smith-Waterman score: 892; 90.2% identity (96.5% similar) in 143 aa overlap (3-145:228-370)
10 20 30
pF1KB5 MAVSTGVKVPRNFRLLEELEEGQKGVGDGTVS
..::::::::::::::::::::::::::::
CCDS13 WVTLLQDWHVILPRKHHRIHHVSPHETYFCITTGVKVPRNFRLLEELEEGQKGVGDGTVS
200 210 220 230 240 250
40 50 60 70 80 90
pF1KB5 WGLEDDEDMTLTRWTGMIIGPPRTNYENRIYSLKVECGPKYPEAPPSVRFVTKINMNGIN
:::::::::::::::::::::::: :::::::::.::::::::::: :::::::::::.:
CCDS13 WGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKINMNGVN
260 270 280 290 300 310
100 110 120 130 140
pF1KB5 NSSGMVDARSIPVLAKWQNSYSIKVVLQELRRLMMSKENMKLPQPPEGQTYNN
.:.:.:: :.: ::::::::::::::::::::::::::::::::::::: :.:
CCDS13 SSNGVVDPRAISVLAKWQNSYSIKVVLQELRRLMMSKENMKLPQPPEGQCYSN
320 330 340 350 360 370
>>CCDS33483.1 UBE2V1 gene_id:7335|Hs108|chr20 (147 aa)
initn: 920 init1: 881 opt: 886 Z-score: 1174.0 bits: 223.2 E(32554): 4.5e-59
Smith-Waterman score: 886; 89.1% identity (95.2% similar) in 147 aa overlap (1-145:1-147)
10 20 30 40 50
pF1KB5 MAVSTG--VKVPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTNY
::..:: :::::::::::::::::::::::::::::::::::::::::::::::::: :
CCDS33 MAATTGSGVKVPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIY
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB5 ENRIYSLKVECGPKYPEAPPSVRFVTKINMNGINNSSGMVDARSIPVLAKWQNSYSIKVV
::::::::.::::::::::: :::::::::::.:.:.:.:: :.: ::::::::::::::
CCDS33 ENRIYSLKIECGPKYPEAPPFVRFVTKINMNGVNSSNGVVDPRAISVLAKWQNSYSIKVV
70 80 90 100 110 120
120 130 140
pF1KB5 LQELRRLMMSKENMKLPQPPEGQTYNN
::::::::::::::::::::::: :.:
CCDS33 LQELRRLMMSKENMKLPQPPEGQCYSN
130 140
>>CCDS13426.1 UBE2V1 gene_id:7335|Hs108|chr20 (170 aa)
initn: 906 init1: 881 opt: 881 Z-score: 1166.5 bits: 222.0 E(32554): 1.2e-58
Smith-Waterman score: 881; 91.4% identity (96.4% similar) in 140 aa overlap (6-145:31-170)
10 20 30
pF1KB5 MAVSTGVKVPRNFRLLEELEEGQKGVGDGTVSWGL
::::::::::::::::::::::::::::::
CCDS13 MPGEVQASYLKSQSKLSDEGRLEPRKFHCKGVKVPRNFRLLEELEEGQKGVGDGTVSWGL
10 20 30 40 50 60
40 50 60 70 80 90
pF1KB5 EDDEDMTLTRWTGMIIGPPRTNYENRIYSLKVECGPKYPEAPPSVRFVTKINMNGINNSS
::::::::::::::::::::: :::::::::.::::::::::: :::::::::::.:.:.
CCDS13 EDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKINMNGVNSSN
70 80 90 100 110 120
100 110 120 130 140
pF1KB5 GMVDARSIPVLAKWQNSYSIKVVLQELRRLMMSKENMKLPQPPEGQTYNN
:.:: :.: ::::::::::::::::::::::::::::::::::::: :.:
CCDS13 GVVDPRAISVLAKWQNSYSIKVVLQELRRLMMSKENMKLPQPPEGQCYSN
130 140 150 160 170
>>CCDS74740.1 UBE2V1 gene_id:7335|Hs108|chr20 (105 aa)
initn: 667 init1: 642 opt: 642 Z-score: 854.9 bits: 163.7 E(32554): 2.7e-41
Smith-Waterman score: 642; 88.6% identity (95.2% similar) in 105 aa overlap (41-145:1-105)
20 30 40 50 60 70
pF1KB5 RNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTNYENRIYSLKVECG
:::::::::::::::: :::::::::.:::
CCDS74 MTLTRWTGMIIGPPRTIYENRIYSLKIECG
10 20 30
80 90 100 110 120 130
pF1KB5 PKYPEAPPSVRFVTKINMNGINNSSGMVDARSIPVLAKWQNSYSIKVVLQELRRLMMSKE
:::::::: :::::::::::.:.:.:.:: :.: ::::::::::::::::::::::::::
CCDS74 PKYPEAPPFVRFVTKINMNGVNSSNGVVDPRAISVLAKWQNSYSIKVVLQELRRLMMSKE
40 50 60 70 80 90
140
pF1KB5 NMKLPQPPEGQTYNN
::::::::::: :.:
CCDS74 NMKLPQPPEGQCYSN
100
>>CCDS13427.1 UBE2V1 gene_id:7335|Hs108|chr20 (103 aa)
initn: 556 init1: 531 opt: 540 Z-score: 720.6 bits: 138.8 E(32554): 8.1e-34
Smith-Waterman score: 540; 76.6% identity (87.9% similar) in 107 aa overlap (39-145:3-103)
10 20 30 40 50 60
pF1KB5 VPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTNYENRIYSLKVE
::..: .:. .: :::::::::.:
CCDS13 MKEDLNLENFTA------KTIYENRIYSLKIE
10 20
70 80 90 100 110 120
pF1KB5 CGPKYPEAPPSVRFVTKINMNGINNSSGMVDARSIPVLAKWQNSYSIKVVLQELRRLMMS
:::::::::: :::::::::::.:.:.:.:: :.: ::::::::::::::::::::::::
CCDS13 CGPKYPEAPPFVRFVTKINMNGVNSSNGVVDPRAISVLAKWQNSYSIKVVLQELRRLMMS
30 40 50 60 70 80
130 140
pF1KB5 KENMKLPQPPEGQTYNN
::::::::::::: :.:
CCDS13 KENMKLPQPPEGQCYSN
90 100
>>CCDS58775.1 UBE2V1 gene_id:7335|Hs108|chr20 (105 aa)
initn: 656 init1: 350 opt: 355 Z-score: 476.8 bits: 93.7 E(32554): 3.1e-20
Smith-Waterman score: 543; 65.3% identity (68.0% similar) in 147 aa overlap (1-145:1-105)
10 20 30 40 50
pF1KB5 MAVSTG--VKVPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTNY
::..:: :::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 MAATTGSGVKVPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPR---
10 20 30 40 50
60 70 80 90 100 110
pF1KB5 ENRIYSLKVECGPKYPEAPPSVRFVTKINMNGINNSSGMVDARSIPVLAKWQNSYSIKVV
:: :.: ::::::::::::::
CCDS58 ---------------------------------------VDPRAISVLAKWQNSYSIKVV
60 70
120 130 140
pF1KB5 LQELRRLMMSKENMKLPQPPEGQTYNN
::::::::::::::::::::::: :.:
CCDS58 LQELRRLMMSKENMKLPQPPEGQCYSN
80 90 100
145 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 06:28:55 2016 done: Sat Nov 5 06:28:56 2016
Total Scan time: 1.660 Total Display time: -0.020
Function used was FASTA [36.3.4 Apr, 2011]