FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB5210, 328 aa
  1>>>pF1KB5210 328 - 328 aa - 328 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.4153+/-0.000873; mu= 15.1090+/- 0.052
 mean_var=65.1811+/-13.414, 0's: 0 Z-trim(106.3): 21  B-trim: 334 in 1/49
 Lambda= 0.158860
 statistics sampled from 8919 (8923) to 8919 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.662), E-opt: 0.2 (0.274), width:  16
 Scan time:  2.680

The best scores are:                                      opt bits E(32554)
CCDS9169.1 SDS gene_id:10993|Hs108|chr12           ( 328) 2143 499.9 1.1e-141
CCDS9170.1 SDSL gene_id:113675|Hs108|chr12         ( 329) 1298 306.2 2.3e-83
CCDS11017.1 SRR gene_id:63826|Hs108|chr17          ( 340)  351 89.2 5.1e-18


>>CCDS9169.1 SDS gene_id:10993|Hs108|chr12                (328 aa)
 initn: 2143 init1: 2143 opt: 2143  Z-score: 2656.9  bits: 499.9 E(32554): 1.1e-141
Smith-Waterman score: 2143; 100.0% identity (100.0% similar) in 328 aa overlap (1-328:1-328)

               10        20        30        40        50        60
pF1KB5 MMSGEPLHVKTPIRDSMALSKMAGTSVYLKMDSAQPSGSFKIRGIGHFCKRWAKQGCAHF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS91 MMSGEPLHVKTPIRDSMALSKMAGTSVYLKMDSAQPSGSFKIRGIGHFCKRWAKQGCAHF
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 VCSSAGNAGMAAAYAARQLGVPATIVVPSTTPALTIERLKNEGATVKVVGELLDEAFELA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS91 VCSSAGNAGMAAAYAARQLGVPATIVVPSTTPALTIERLKNEGATVKVVGELLDEAFELA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB5 KALAKNNPGWVYIPPFDDPLIWEGHASIVKELKETLWEKPGAIALSVGGGGLLCGVVQGL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS91 KALAKNNPGWVYIPPFDDPLIWEGHASIVKELKETLWEKPGAIALSVGGGGLLCGVVQGL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB5 QEVGWGDVPVIAMETFGAHSFHAATTAGKLVSLPKITSVAKALGVKTVGAQALKLFQEHP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS91 QEVGWGDVPVIAMETFGAHSFHAATTAGKLVSLPKITSVAKALGVKTVGAQALKLFQEHP
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB5 IFSEVISDQEAVAAIEKFVDDEKILVEPACGAALAAVYSHVIQKLQLEGNLRTPLPSLVV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS91 IFSEVISDQEAVAAIEKFVDDEKILVEPACGAALAAVYSHVIQKLQLEGNLRTPLPSLVV
              250       260       270       280       290       300

              310       320        
pF1KB5 IVCGGSNISLAQLRALKEQLGMTNRLPK
       ::::::::::::::::::::::::::::
CCDS91 IVCGGSNISLAQLRALKEQLGMTNRLPK
              310       320        

>>CCDS9170.1 SDSL gene_id:113675|Hs108|chr12              (329 aa)
 initn: 1296 init1: 809 opt: 1298  Z-score: 1610.2  bits: 306.2 E(32554): 2.3e-83
Smith-Waterman score: 1298; 61.8% identity (83.3% similar) in 317 aa overlap (5-321:12-327)

                      10        20        30        40        50   
pF1KB5        MMSGEPLHVKTPIRDSMALSKMAGTSVYLKMDSAQPSGSFKIRGIGHFCKRWA
                  ::.:: ::. .: :::..::  :.:: ...:::::::::::::::.. :
CCDS91 MDGPVAEHAKQEPFHVVTPLLESWALSQVAGMPVFLKCENVQPSGSFKIRGIGHFCQEMA
               10        20        30        40        50        60

            60        70        80        90       100       110   
pF1KB5 KQGCAHFVCSSAGNAGMAAAYAARQLGVPATIVVPSTTPALTIERLKNEGATVKVVGELL
       :.:: :.::::.::::.:::::::.::.:::::.: .:   ...::..::: :...:.. 
CCDS91 KKGCRHLVCSSGGNAGIAAAYAARKLGIPATIVLPESTSLQVVQRLQGEGAEVQLTGKVW
               70        80        90       100       110       120

           120       130       140       150       160       170   
pF1KB5 DEAFELAKALAKNNPGWVYIPPFDDPLIWEGHASIVKELKETLWEKPGAIALSVGGGGLL
       :::   :. ::: . ::  .:::: ::::.::::.:.::: .:   :::..:.:::::::
CCDS91 DEANLRAQELAKRD-GWENVPPFDHPLIWKGHASLVQELKAVLRTPPGALVLAVGGGGLL
              130        140       150       160       170         

           180       190       200       210       220       230   
pF1KB5 CGVVQGLQEVGWGDVPVIAMETFGAHSFHAATTAGKLVSLPKITSVAKALGVKTVGAQAL
        ::: :: ::::  ::.::::: ::: :.:: ::::::.:: ::::::.::.:::.:.::
CCDS91 AGVVAGLLEVGWQHVPIIAMETHGAHCFNAAITAGKLVTLPDITSVAKSLGAKTVAARAL
     180       190       200       210       220       230         

           240       250       260       270       280       290   
pF1KB5 KLFQEHPIFSEVISDQEAVAAIEKFVDDEKILVEPACGAALAAVYSHVIQKLQLEGNLRT
       . .:   : :::. : :::.:.....:::..::::::::::::.:: ....:: :: :  
CCDS91 ECMQVCKIHSEVVEDTEAVSAVQQLLDDERMLVEPACGAALAAIYSGLLRRLQAEGCLPP
     240       250       260       270       280       290         

           300       310       320        
pF1KB5 PLPSLVVIVCGGSNISLAQLRALKEQLGMTNRLPK
        : :.:::::::.::.  .:.::: .::       
CCDS91 SLTSVVVIVCGGNNINSRELQALKTHLGQV     
     300       310       320              

>>CCDS11017.1 SRR gene_id:63826|Hs108|chr17               (340 aa)
 initn: 308 init1: 123 opt: 351  Z-score: 437.0  bits: 89.2 E(32554): 5.1e-18
Smith-Waterman score: 362; 29.0% identity (60.3% similar) in 317 aa overlap (5-310:21-319)

                               10        20        30        40    
pF1KB5                 MMSGEPLHVKTPIRDSMALSKMAGTSVYLKMDSAQPSGSFKIRG
                           . .:. ::.  :  :....: ....: .  : .:::::::
CCDS11 MCAQYCISFADVEKAHINIRDSIHL-TPVLTSSILNQLTGRNLFFKCELFQKTGSFKIRG
               10        20         30        40        50         

           50            60        70        80        90       100
pF1KB5 IGHFCKRWAKQGCAH----FVCSSAGNAGMAAAYAARQLGVPATIVVPSTTPALTIERLK
         .  .  . ..  .     :  :.:: :.: .:::.  :.:: ::::.:.:      ..
CCDS11 ALNAVRSLVPDALERKPKAVVTHSSGNHGQALTYAAKLEGIPAYIVVPQTAPDCKKLAIQ
      60        70        80        90       100       110         

              110        120       130       140       150         
pF1KB5 NEGATVKVVGELLDEAFE-LAKALAKNNPGWVYIPPFDDPLIWEGHASIVKELKETLWEK
         ::.. :  :  ::. : .:: ..... : ... : ..: .  :...:. :.   : . 
CCDS11 AYGASI-VYCEPSDESRENVAKRVTEETEG-IMVHPNQEPAVIAGQGTIALEV---LNQV
     120        130       140        150       160       170       

     160         170       180       190       200       210       
pF1KB5 P--GAIALSVGGGGLLCGVVQGLQEVGWGDVPVIAMETFGAHSFHAATTAGKLV-SLPKI
       :   :... :::::.: :..  .. .   .: : : :  .: . . .   :::. .:   
CCDS11 PLVDALVVPVGGGGMLAGIAITVKALK-PSVKVYAAEPSNADDCYQSKLKGKLMPNLYPP
          180       190       200        210       220       230   

        220        230         240       250       260       270   
pF1KB5 TSVAKALGVKT-VGAQALKLFQE--HPIFSEVISDQEAVAAIEKFVDDEKILVEPACGAA
        ..:   :::. .: ..  ....    ::.  ....:   : .   .  :.:.::. :..
CCDS11 ETIAD--GVKSSIGLNTWPIIRDLVDDIFT--VTEDEIKCATQLVWERMKLLIEPTAGVG
             240       250       260         270       280         

           280       290       300       310       320           
pF1KB5 LAAVYSHVIQKLQLEGNLRTPLPSLVVIVCGGSNISLAQLRALKEQLGMTNRLPK   
       .::: :. .: .       .:  . . :: .:.:..:                     
CCDS11 VAAVLSQHFQTV-------SPEVKNICIVLSGGNVDLTSSITWVKQAERPASYQSVSV
     290       300              310       320       330       340




328 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 06:28:14 2016 done: Sat Nov  5 06:28:15 2016
 Total Scan time:  2.680 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]