Result of FASTA (omim) for
pF1KB5190
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB5190, 588 aa
1>>>pF1KB5190 588 - 588 aa - 588 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 8.1255+/-0.000358; mu= 7.2480+/- 0.022
mean_var=193.0402+/-39.074, 0's: 0 Z-trim(121.5): 96 B-trim: 937 in 2/57
Lambda= 0.092310
statistics sampled from 38146 (38261) to 38146 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.776), E-opt: 0.2 (0.449), width: 16
Scan time: 10.900
The best scores are: opt bits E(85289)
NP_001027568 (OMIM: 300420) E3 ubiquitin-protein l ( 588) 4049 551.8 2.4e-156
XP_005262349 (OMIM: 300420) PREDICTED: E3 ubiquiti ( 588) 4049 551.8 2.4e-156
XP_011529313 (OMIM: 300420) PREDICTED: E3 ubiquiti ( 643) 4049 551.8 2.5e-156
NP_660095 (OMIM: 300420) E3 ubiquitin-protein liga ( 643) 4049 551.8 2.5e-156
NP_071763 (OMIM: 300420) E3 ubiquitin-protein liga ( 455) 2484 343.2 1.1e-93
XP_005259651 (OMIM: 615177) PREDICTED: E3 ubiquiti ( 284) 278 49.3 2.1e-05
NP_919442 (OMIM: 615177) E3 ubiquitin-protein liga ( 311) 278 49.3 2.2e-05
NP_057578 (OMIM: 612490) E3 ubiquitin-protein liga ( 153) 255 46.0 0.00011
>>NP_001027568 (OMIM: 300420) E3 ubiquitin-protein ligas (588 aa)
initn: 4049 init1: 4049 opt: 4049 Z-score: 2928.0 bits: 551.8 E(85289): 2.4e-156
Smith-Waterman score: 4049; 100.0% identity (100.0% similar) in 588 aa overlap (1-588:1-588)
10 20 30 40 50 60
pF1KB5 MHRSAPSQTTKRSRSPFSTTRRSWDDSESSGTNLNIDNEDYSRYPPREYRASGSRRGMAY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MHRSAPSQTTKRSRSPFSTTRRSWDDSESSGTNLNIDNEDYSRYPPREYRASGSRRGMAY
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 GHIDSYGADDSEEEGAGPVERPPVRGKTGKFKDDKLYDPEKGARSLAGPPPHFSSFSRDV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GHIDSYGADDSEEEGAGPVERPPVRGKTGKFKDDKLYDPEKGARSLAGPPPHFSSFSRDV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB5 REERDKLDPVPAARCSASRADFLPQSSVASQSSSEGKLATKGDSSERERREQNLPARPSR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 REERDKLDPVPAARCSASRADFLPQSSVASQSSSEGKLATKGDSSERERREQNLPARPSR
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB5 APVSICGGGENTSKSAEEPVVRPKIRNLASPNCVKPKIFFDTDDDDDMPHSTSRWRDTAN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 APVSICGGGENTSKSAEEPVVRPKIRNLASPNCVKPKIFFDTDDDDDMPHSTSRWRDTAN
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB5 DNEGHSDGLARRGRGESSSGYPEPKYPEDKREARSDQVKPEKVPRRRRTMADPDFWTHSD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DNEGHSDGLARRGRGESSSGYPEPKYPEDKREARSDQVKPEKVPRRRRTMADPDFWTHSD
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB5 DYYKYCDEDSDSDKEWIAALRRKYRSREQTLSSSGESWETLPGKEEREPPQAKVSASTGT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DYYKYCDEDSDSDKEWIAALRRKYRSREQTLSSSGESWETLPGKEEREPPQAKVSASTGT
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB5 SPGPGASASAGAGAGASAGSNGSNYLEEVREPSLQEEQASLEEGEIPWLQYHENDSSSEG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SPGPGASASAGAGAGASAGSNGSNYLEEVREPSLQEEQASLEEGEIPWLQYHENDSSSEG
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB5 DNDSGHELMQPGVFMLDGNNNLEDDSSVSEDLEVDWSLFDGFADGLGVAEAISYVDPQFL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DNDSGHELMQPGVFMLDGNNNLEDDSSVSEDLEVDWSLFDGFADGLGVAEAISYVDPQFL
430 440 450 460 470 480
490 500 510 520 530 540
pF1KB5 TYMALEERLAQAMETALAHLESLAVDVEVANPPASKESIDALPEILVTEDHGAVGQEMCC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TYMALEERLAQAMETALAHLESLAVDVEVANPPASKESIDALPEILVTEDHGAVGQEMCC
490 500 510 520 530 540
550 560 570 580
pF1KB5 PICCSEYVKGEVATELPCHHYFHKPCVSIWLQKSGTCPVCRCMFPPPL
::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PICCSEYVKGEVATELPCHHYFHKPCVSIWLQKSGTCPVCRCMFPPPL
550 560 570 580
>>XP_005262349 (OMIM: 300420) PREDICTED: E3 ubiquitin-pr (588 aa)
initn: 4049 init1: 4049 opt: 4049 Z-score: 2928.0 bits: 551.8 E(85289): 2.4e-156
Smith-Waterman score: 4049; 100.0% identity (100.0% similar) in 588 aa overlap (1-588:1-588)
10 20 30 40 50 60
pF1KB5 MHRSAPSQTTKRSRSPFSTTRRSWDDSESSGTNLNIDNEDYSRYPPREYRASGSRRGMAY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MHRSAPSQTTKRSRSPFSTTRRSWDDSESSGTNLNIDNEDYSRYPPREYRASGSRRGMAY
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 GHIDSYGADDSEEEGAGPVERPPVRGKTGKFKDDKLYDPEKGARSLAGPPPHFSSFSRDV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 GHIDSYGADDSEEEGAGPVERPPVRGKTGKFKDDKLYDPEKGARSLAGPPPHFSSFSRDV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB5 REERDKLDPVPAARCSASRADFLPQSSVASQSSSEGKLATKGDSSERERREQNLPARPSR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 REERDKLDPVPAARCSASRADFLPQSSVASQSSSEGKLATKGDSSERERREQNLPARPSR
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB5 APVSICGGGENTSKSAEEPVVRPKIRNLASPNCVKPKIFFDTDDDDDMPHSTSRWRDTAN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 APVSICGGGENTSKSAEEPVVRPKIRNLASPNCVKPKIFFDTDDDDDMPHSTSRWRDTAN
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB5 DNEGHSDGLARRGRGESSSGYPEPKYPEDKREARSDQVKPEKVPRRRRTMADPDFWTHSD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 DNEGHSDGLARRGRGESSSGYPEPKYPEDKREARSDQVKPEKVPRRRRTMADPDFWTHSD
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB5 DYYKYCDEDSDSDKEWIAALRRKYRSREQTLSSSGESWETLPGKEEREPPQAKVSASTGT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 DYYKYCDEDSDSDKEWIAALRRKYRSREQTLSSSGESWETLPGKEEREPPQAKVSASTGT
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB5 SPGPGASASAGAGAGASAGSNGSNYLEEVREPSLQEEQASLEEGEIPWLQYHENDSSSEG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 SPGPGASASAGAGAGASAGSNGSNYLEEVREPSLQEEQASLEEGEIPWLQYHENDSSSEG
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB5 DNDSGHELMQPGVFMLDGNNNLEDDSSVSEDLEVDWSLFDGFADGLGVAEAISYVDPQFL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 DNDSGHELMQPGVFMLDGNNNLEDDSSVSEDLEVDWSLFDGFADGLGVAEAISYVDPQFL
430 440 450 460 470 480
490 500 510 520 530 540
pF1KB5 TYMALEERLAQAMETALAHLESLAVDVEVANPPASKESIDALPEILVTEDHGAVGQEMCC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 TYMALEERLAQAMETALAHLESLAVDVEVANPPASKESIDALPEILVTEDHGAVGQEMCC
490 500 510 520 530 540
550 560 570 580
pF1KB5 PICCSEYVKGEVATELPCHHYFHKPCVSIWLQKSGTCPVCRCMFPPPL
::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 PICCSEYVKGEVATELPCHHYFHKPCVSIWLQKSGTCPVCRCMFPPPL
550 560 570 580
>>XP_011529313 (OMIM: 300420) PREDICTED: E3 ubiquitin-pr (643 aa)
initn: 4049 init1: 4049 opt: 4049 Z-score: 2927.4 bits: 551.8 E(85289): 2.5e-156
Smith-Waterman score: 4049; 100.0% identity (100.0% similar) in 588 aa overlap (1-588:56-643)
10 20 30
pF1KB5 MHRSAPSQTTKRSRSPFSTTRRSWDDSESS
::::::::::::::::::::::::::::::
XP_011 GRRHAYVSFRPPTSQRERIASQRKTNSEVPMHRSAPSQTTKRSRSPFSTTRRSWDDSESS
30 40 50 60 70 80
40 50 60 70 80 90
pF1KB5 GTNLNIDNEDYSRYPPREYRASGSRRGMAYGHIDSYGADDSEEEGAGPVERPPVRGKTGK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GTNLNIDNEDYSRYPPREYRASGSRRGMAYGHIDSYGADDSEEEGAGPVERPPVRGKTGK
90 100 110 120 130 140
100 110 120 130 140 150
pF1KB5 FKDDKLYDPEKGARSLAGPPPHFSSFSRDVREERDKLDPVPAARCSASRADFLPQSSVAS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 FKDDKLYDPEKGARSLAGPPPHFSSFSRDVREERDKLDPVPAARCSASRADFLPQSSVAS
150 160 170 180 190 200
160 170 180 190 200 210
pF1KB5 QSSSEGKLATKGDSSERERREQNLPARPSRAPVSICGGGENTSKSAEEPVVRPKIRNLAS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 QSSSEGKLATKGDSSERERREQNLPARPSRAPVSICGGGENTSKSAEEPVVRPKIRNLAS
210 220 230 240 250 260
220 230 240 250 260 270
pF1KB5 PNCVKPKIFFDTDDDDDMPHSTSRWRDTANDNEGHSDGLARRGRGESSSGYPEPKYPEDK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PNCVKPKIFFDTDDDDDMPHSTSRWRDTANDNEGHSDGLARRGRGESSSGYPEPKYPEDK
270 280 290 300 310 320
280 290 300 310 320 330
pF1KB5 REARSDQVKPEKVPRRRRTMADPDFWTHSDDYYKYCDEDSDSDKEWIAALRRKYRSREQT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 REARSDQVKPEKVPRRRRTMADPDFWTHSDDYYKYCDEDSDSDKEWIAALRRKYRSREQT
330 340 350 360 370 380
340 350 360 370 380 390
pF1KB5 LSSSGESWETLPGKEEREPPQAKVSASTGTSPGPGASASAGAGAGASAGSNGSNYLEEVR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LSSSGESWETLPGKEEREPPQAKVSASTGTSPGPGASASAGAGAGASAGSNGSNYLEEVR
390 400 410 420 430 440
400 410 420 430 440 450
pF1KB5 EPSLQEEQASLEEGEIPWLQYHENDSSSEGDNDSGHELMQPGVFMLDGNNNLEDDSSVSE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 EPSLQEEQASLEEGEIPWLQYHENDSSSEGDNDSGHELMQPGVFMLDGNNNLEDDSSVSE
450 460 470 480 490 500
460 470 480 490 500 510
pF1KB5 DLEVDWSLFDGFADGLGVAEAISYVDPQFLTYMALEERLAQAMETALAHLESLAVDVEVA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 DLEVDWSLFDGFADGLGVAEAISYVDPQFLTYMALEERLAQAMETALAHLESLAVDVEVA
510 520 530 540 550 560
520 530 540 550 560 570
pF1KB5 NPPASKESIDALPEILVTEDHGAVGQEMCCPICCSEYVKGEVATELPCHHYFHKPCVSIW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 NPPASKESIDALPEILVTEDHGAVGQEMCCPICCSEYVKGEVATELPCHHYFHKPCVSIW
570 580 590 600 610 620
580
pF1KB5 LQKSGTCPVCRCMFPPPL
::::::::::::::::::
XP_011 LQKSGTCPVCRCMFPPPL
630 640
>>NP_660095 (OMIM: 300420) E3 ubiquitin-protein ligase P (643 aa)
initn: 4049 init1: 4049 opt: 4049 Z-score: 2927.4 bits: 551.8 E(85289): 2.5e-156
Smith-Waterman score: 4049; 100.0% identity (100.0% similar) in 588 aa overlap (1-588:56-643)
10 20 30
pF1KB5 MHRSAPSQTTKRSRSPFSTTRRSWDDSESS
::::::::::::::::::::::::::::::
NP_660 GRRHAYVSFRPPTSQRERIASQRKTNSEVPMHRSAPSQTTKRSRSPFSTTRRSWDDSESS
30 40 50 60 70 80
40 50 60 70 80 90
pF1KB5 GTNLNIDNEDYSRYPPREYRASGSRRGMAYGHIDSYGADDSEEEGAGPVERPPVRGKTGK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_660 GTNLNIDNEDYSRYPPREYRASGSRRGMAYGHIDSYGADDSEEEGAGPVERPPVRGKTGK
90 100 110 120 130 140
100 110 120 130 140 150
pF1KB5 FKDDKLYDPEKGARSLAGPPPHFSSFSRDVREERDKLDPVPAARCSASRADFLPQSSVAS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_660 FKDDKLYDPEKGARSLAGPPPHFSSFSRDVREERDKLDPVPAARCSASRADFLPQSSVAS
150 160 170 180 190 200
160 170 180 190 200 210
pF1KB5 QSSSEGKLATKGDSSERERREQNLPARPSRAPVSICGGGENTSKSAEEPVVRPKIRNLAS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_660 QSSSEGKLATKGDSSERERREQNLPARPSRAPVSICGGGENTSKSAEEPVVRPKIRNLAS
210 220 230 240 250 260
220 230 240 250 260 270
pF1KB5 PNCVKPKIFFDTDDDDDMPHSTSRWRDTANDNEGHSDGLARRGRGESSSGYPEPKYPEDK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_660 PNCVKPKIFFDTDDDDDMPHSTSRWRDTANDNEGHSDGLARRGRGESSSGYPEPKYPEDK
270 280 290 300 310 320
280 290 300 310 320 330
pF1KB5 REARSDQVKPEKVPRRRRTMADPDFWTHSDDYYKYCDEDSDSDKEWIAALRRKYRSREQT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_660 REARSDQVKPEKVPRRRRTMADPDFWTHSDDYYKYCDEDSDSDKEWIAALRRKYRSREQT
330 340 350 360 370 380
340 350 360 370 380 390
pF1KB5 LSSSGESWETLPGKEEREPPQAKVSASTGTSPGPGASASAGAGAGASAGSNGSNYLEEVR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_660 LSSSGESWETLPGKEEREPPQAKVSASTGTSPGPGASASAGAGAGASAGSNGSNYLEEVR
390 400 410 420 430 440
400 410 420 430 440 450
pF1KB5 EPSLQEEQASLEEGEIPWLQYHENDSSSEGDNDSGHELMQPGVFMLDGNNNLEDDSSVSE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_660 EPSLQEEQASLEEGEIPWLQYHENDSSSEGDNDSGHELMQPGVFMLDGNNNLEDDSSVSE
450 460 470 480 490 500
460 470 480 490 500 510
pF1KB5 DLEVDWSLFDGFADGLGVAEAISYVDPQFLTYMALEERLAQAMETALAHLESLAVDVEVA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_660 DLEVDWSLFDGFADGLGVAEAISYVDPQFLTYMALEERLAQAMETALAHLESLAVDVEVA
510 520 530 540 550 560
520 530 540 550 560 570
pF1KB5 NPPASKESIDALPEILVTEDHGAVGQEMCCPICCSEYVKGEVATELPCHHYFHKPCVSIW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_660 NPPASKESIDALPEILVTEDHGAVGQEMCCPICCSEYVKGEVATELPCHHYFHKPCVSIW
570 580 590 600 610 620
580
pF1KB5 LQKSGTCPVCRCMFPPPL
::::::::::::::::::
NP_660 LQKSGTCPVCRCMFPPPL
630 640
>>NP_071763 (OMIM: 300420) E3 ubiquitin-protein ligase P (455 aa)
initn: 2742 init1: 2477 opt: 2484 Z-score: 1803.1 bits: 343.2 E(85289): 1.1e-93
Smith-Waterman score: 2484; 98.6% identity (99.5% similar) in 365 aa overlap (224-588:92-455)
200 210 220 230 240 250
pF1KB5 KSAEEPVVRPKIRNLASPNCVKPKIFFDTDDDDDMPHSTSRWRDTANDNEGHSDGLARRG
:..:. :::::::::::::::::::::::
NP_071 SQTTKRSRSPFSTTRRSWDDSESSGTNLNIDNEDYS-STSRWRDTANDNEGHSDGLARRG
70 80 90 100 110 120
260 270 280 290 300 310
pF1KB5 RGESSSGYPEPKYPEDKREARSDQVKPEKVPRRRRTMADPDFWTHSDDYYKYCDEDSDSD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_071 RGESSSGYPEPKYPEDKREARSDQVKPEKVPRRRRTMADPDFWTHSDDYYKYCDEDSDSD
130 140 150 160 170 180
320 330 340 350 360 370
pF1KB5 KEWIAALRRKYRSREQTLSSSGESWETLPGKEEREPPQAKVSASTGTSPGPGASASAGAG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_071 KEWIAALRRKYRSREQTLSSSGESWETLPGKEEREPPQAKVSASTGTSPGPGASASAGAG
190 200 210 220 230 240
380 390 400 410 420 430
pF1KB5 AGASAGSNGSNYLEEVREPSLQEEQASLEEGEIPWLQYHENDSSSEGDNDSGHELMQPGV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_071 AGASAGSNGSNYLEEVREPSLQEEQASLEEGEIPWLQYHENDSSSEGDNDSGHELMQPGV
250 260 270 280 290 300
440 450 460 470 480 490
pF1KB5 FMLDGNNNLEDDSSVSEDLEVDWSLFDGFADGLGVAEAISYVDPQFLTYMALEERLAQAM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_071 FMLDGNNNLEDDSSVSEDLEVDWSLFDGFADGLGVAEAISYVDPQFLTYMALEERLAQAM
310 320 330 340 350 360
500 510 520 530 540 550
pF1KB5 ETALAHLESLAVDVEVANPPASKESIDALPEILVTEDHGAVGQEMCCPICCSEYVKGEVA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_071 ETALAHLESLAVDVEVANPPASKESIDALPEILVTEDHGAVGQEMCCPICCSEYVKGEVA
370 380 390 400 410 420
560 570 580
pF1KB5 TELPCHHYFHKPCVSIWLQKSGTCPVCRCMFPPPL
:::::::::::::::::::::::::::::::::::
NP_071 TELPCHHYFHKPCVSIWLQKSGTCPVCRCMFPPPL
430 440 450
>>XP_005259651 (OMIM: 615177) PREDICTED: E3 ubiquitin-pr (284 aa)
initn: 302 init1: 203 opt: 278 Z-score: 218.1 bits: 49.3 E(85289): 2.1e-05
Smith-Waterman score: 278; 50.0% identity (75.7% similar) in 70 aa overlap (512-581:176-243)
490 500 510 520 530 540
pF1KB5 YMALEERLAQAMETALAHLESLAVDVEVANPPASKESIDALPEILVTEDHGAVGQEMCCP
:::.::.:.::: . :::.: ::. . ::
XP_005 HSNPMDYAWGANGLDAIITQLLNQFENTGPPPADKEKIQALPTVPVTEEH--VGSGLECP
150 160 170 180 190 200
550 560 570 580
pF1KB5 ICCSEYVKGEVATELPCHHYFHKPCVSIWLQKSGTCPVCRCMFPPPL
.: ..:. :: . .:::.: :: :. ::.. .:::::
XP_005 VCKDDYALGERVRQLPCNHLFHDGCIVPWLEQHDSCPVCRKSLTGQNTATNPPGLTGVSF
210 220 230 240 250 260
XP_005 SSSSSSSSSSSPSNENATSNS
270 280
>>NP_919442 (OMIM: 615177) E3 ubiquitin-protein ligase R (311 aa)
initn: 302 init1: 203 opt: 278 Z-score: 217.6 bits: 49.3 E(85289): 2.2e-05
Smith-Waterman score: 278; 50.0% identity (75.7% similar) in 70 aa overlap (512-581:203-270)
490 500 510 520 530 540
pF1KB5 YMALEERLAQAMETALAHLESLAVDVEVANPPASKESIDALPEILVTEDHGAVGQEMCCP
:::.::.:.::: . :::.: ::. . ::
NP_919 HSNPMDYAWGANGLDAIITQLLNQFENTGPPPADKEKIQALPTVPVTEEH--VGSGLECP
180 190 200 210 220 230
550 560 570 580
pF1KB5 ICCSEYVKGEVATELPCHHYFHKPCVSIWLQKSGTCPVCRCMFPPPL
.: ..:. :: . .:::.: :: :. ::.. .:::::
NP_919 VCKDDYALGERVRQLPCNHLFHDGCIVPWLEQHDSCPVCRKSLTGQNTATNPPGLTGVSF
240 250 260 270 280 290
NP_919 SSSSSSSSSSSPSNENATSNS
300 310
>>NP_057578 (OMIM: 612490) E3 ubiquitin-protein ligase R (153 aa)
initn: 248 init1: 209 opt: 255 Z-score: 205.1 bits: 46.0 E(85289): 0.00011
Smith-Waterman score: 255; 32.7% identity (65.5% similar) in 113 aa overlap (476-585:14-121)
450 460 470 480 490 500
pF1KB5 SSVSEDLEVDWSLFDGFADGLGVAEAISYVDPQFLTYMALEERLAQAMETALAHLESLAV
::. : . .::... . . .:.:..
NP_057 MASYFDEHDCEPSDPEQETRTNMLLELARSLFNRM-DFEDLGL
10 20 30 40
510 520 530 540 550 560
pF1KB5 DVEVAN---PPASKESIDALPEILVTEDHGAVGQEMCCPICCSEYVKGEVATELPCHHYF
:. . :::.: .. ::. .. ... :. ::.: :. . :.: :.:::: :
NP_057 VVDWDHHLPPPAAKTVVENLPRTVIRGSQA----ELKCPVCLLEFEEEETAIEMPCHHLF
50 60 70 80 90
570 580
pF1KB5 HKPCVSIWLQKSGTCPVCRCMFPPPL
:. :. ::.:...::.:: .:
NP_057 HSSCILPWLSKTNSCPLCRYELPTDDDTYEEHRRDKARKQQQQHRLENLHGAMYT
100 110 120 130 140 150
588 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 22:21:09 2016 done: Fri Nov 4 22:21:11 2016
Total Scan time: 10.900 Total Display time: 0.050
Function used was FASTA [36.3.4 Apr, 2011]