Result of FASTA (omim) for
pF1KB5169
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB5169, 437 aa
1>>>pF1KB5169 437 - 437 aa - 437 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 9.3994+/-0.00043; mu= 1.3650+/- 0.027
mean_var=404.0446+/-83.181, 0's: 0 Z-trim(123.5): 217 B-trim: 931 in 1/56
Lambda= 0.063806
statistics sampled from 43035 (43309) to 43035 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.785), E-opt: 0.2 (0.508), width: 16
Scan time: 11.090
The best scores are: opt bits E(85289)
NP_003080 (OMIM: 180740) U1 small nuclear ribonucl ( 437) 3063 295.9 1.3e-79
XP_011525542 (OMIM: 180740) PREDICTED: U1 small nu ( 345) 2146 211.4 3e-54
NP_001287998 (OMIM: 180740) U1 small nuclear ribon ( 428) 2019 199.8 1.1e-50
XP_005259235 (OMIM: 180740) PREDICTED: U1 small nu ( 122) 876 93.9 2.5e-19
XP_011525543 (OMIM: 180740) PREDICTED: U1 small nu ( 122) 876 93.9 2.5e-19
NP_001182356 (OMIM: 600813) serine/arginine-rich s ( 221) 349 45.7 0.00014
XP_016880431 (OMIM: 600813) PREDICTED: serine/argi ( 221) 349 45.7 0.00014
NP_003007 (OMIM: 600813) serine/arginine-rich spli ( 221) 349 45.7 0.00014
XP_005266369 (OMIM: 616453) PREDICTED: zinc finger (1564) 350 46.9 0.00044
NP_055885 (OMIM: 616453) zinc finger CCCH domain-c (1564) 350 46.9 0.00044
NP_001317494 (OMIM: 616453) zinc finger CCCH domai (1668) 350 47.0 0.00045
NP_001317495 (OMIM: 616453) zinc finger CCCH domai (1668) 350 47.0 0.00045
NP_001317496 (OMIM: 616453) zinc finger CCCH domai (1668) 350 47.0 0.00045
NP_001070256 (OMIM: 616453) zinc finger CCCH domai (1669) 350 47.0 0.00045
XP_005266367 (OMIM: 616453) PREDICTED: zinc finger (1669) 350 47.0 0.00045
NP_001317493 (OMIM: 616453) zinc finger CCCH domai (1669) 350 47.0 0.00045
XP_016875967 (OMIM: 616453) PREDICTED: zinc finger (1669) 350 47.0 0.00045
XP_016875969 (OMIM: 616453) PREDICTED: zinc finger (1669) 350 47.0 0.00045
XP_016875966 (OMIM: 616453) PREDICTED: zinc finger (1669) 350 47.0 0.00045
XP_016875968 (OMIM: 616453) PREDICTED: zinc finger (1669) 350 47.0 0.00045
XP_011535347 (OMIM: 612427) PREDICTED: RNA-binding ( 638) 339 45.4 0.00052
XP_005266364 (OMIM: 616453) PREDICTED: zinc finger (1696) 348 46.8 0.00052
XP_005266361 (OMIM: 616453) PREDICTED: zinc finger (1697) 348 46.8 0.00052
XP_005266363 (OMIM: 616453) PREDICTED: zinc finger (1697) 348 46.8 0.00052
XP_016875964 (OMIM: 616453) PREDICTED: zinc finger (1697) 348 46.8 0.00052
XP_016875965 (OMIM: 616453) PREDICTED: zinc finger (1697) 348 46.8 0.00052
XP_005266360 (OMIM: 616453) PREDICTED: zinc finger (1697) 348 46.8 0.00052
XP_005266359 (OMIM: 616453) PREDICTED: zinc finger (1697) 348 46.8 0.00052
XP_005266362 (OMIM: 616453) PREDICTED: zinc finger (1697) 348 46.8 0.00052
XP_005266358 (OMIM: 616453) PREDICTED: zinc finger (1697) 348 46.8 0.00052
XP_011535346 (OMIM: 612427) PREDICTED: RNA-binding ( 843) 339 45.6 0.00061
NP_067062 (OMIM: 612427) RNA-binding protein 25 [H ( 843) 339 45.6 0.00061
NP_037425 (OMIM: 602718) transformer-2 protein hom ( 282) 320 43.2 0.0011
XP_005249782 (OMIM: 602718) PREDICTED: transformer ( 181) 304 41.4 0.0023
NP_001269686 (OMIM: 602718) transformer-2 protein ( 181) 304 41.4 0.0023
NP_001269687 (OMIM: 602718) transformer-2 protein ( 181) 304 41.4 0.0023
XP_016867579 (OMIM: 602718) PREDICTED: transformer ( 181) 304 41.4 0.0023
XP_016867578 (OMIM: 602718) PREDICTED: transformer ( 181) 304 41.4 0.0023
XP_016858312 (OMIM: 602010) PREDICTED: serine/argi ( 294) 304 41.7 0.003
XP_016858318 (OMIM: 602010) PREDICTED: serine/argi ( 294) 304 41.7 0.003
XP_016858313 (OMIM: 602010) PREDICTED: serine/argi ( 294) 304 41.7 0.003
XP_016858314 (OMIM: 602010) PREDICTED: serine/argi ( 294) 304 41.7 0.003
XP_016858311 (OMIM: 602010) PREDICTED: serine/argi ( 294) 304 41.7 0.003
XP_016858317 (OMIM: 602010) PREDICTED: serine/argi ( 294) 304 41.7 0.003
XP_016858316 (OMIM: 602010) PREDICTED: serine/argi ( 294) 304 41.7 0.003
XP_016858315 (OMIM: 602010) PREDICTED: serine/argi ( 294) 304 41.7 0.003
NP_001269688 (OMIM: 602718) transformer-2 protein ( 180) 298 40.9 0.0033
XP_016858301 (OMIM: 602010) PREDICTED: serine/argi ( 484) 304 42.0 0.0041
NP_004759 (OMIM: 602010) serine/arginine-rich spli ( 484) 304 42.0 0.0041
XP_011540729 (OMIM: 602010) PREDICTED: serine/argi ( 484) 304 42.0 0.0041
>>NP_003080 (OMIM: 180740) U1 small nuclear ribonucleopr (437 aa)
initn: 3063 init1: 3063 opt: 3063 Z-score: 1550.0 bits: 295.9 E(85289): 1.3e-79
Smith-Waterman score: 3063; 100.0% identity (100.0% similar) in 437 aa overlap (1-437:1-437)
10 20 30 40 50 60
pF1KB5 MTQFLPPNLLALFAPRDPIPYLPPLEKLPHEKHHNQPYCGIAPYIREFEDPRDAPPPTRA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 MTQFLPPNLLALFAPRDPIPYLPPLEKLPHEKHHNQPYCGIAPYIREFEDPRDAPPPTRA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 ETREERMERKRREKIERRQQEVETELKMWDPHNDPNAQGDAFKTLFVARVNYDTTESKLR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 ETREERMERKRREKIERRQQEVETELKMWDPHNDPNAQGDAFKTLFVARVNYDTTESKLR
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB5 REFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVER
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 REFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVER
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB5 GRTVKGWRPRRLGGGLGGTRRGGADVNIRHSGRDDTSRYDERPGPSPLPHRDRDRDRERE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 GRTVKGWRPRRLGGGLGGTRRGGADVNIRHSGRDDTSRYDERPGPSPLPHRDRDRDRERE
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB5 RRERSRERDKERERRRSRSRDRRRRSRSRDKEERRRSRERSKDKDRDRKRRSSRSRERAR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 RRERSRERDKERERRRSRSRDRRRRSRSRDKEERRRSRERSKDKDRDRKRRSSRSRERAR
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB5 RERERKEELRGGGGDMAEPSEAGDAPPDDGPPGELGPDGPDGPEEKGRDRDRERRRSHRS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 RERERKEELRGGGGDMAEPSEAGDAPPDDGPPGELGPDGPDGPEEKGRDRDRERRRSHRS
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB5 ERERRRDRDRDRDRDREHKRGERGSERGRDEARGGGGGQDNGLEGLGNDSRDMYMESEGG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 ERERRRDRDRDRDRDREHKRGERGSERGRDEARGGGGGQDNGLEGLGNDSRDMYMESEGG
370 380 390 400 410 420
430
pF1KB5 DGYLAPENGYLMEAAPE
:::::::::::::::::
NP_003 DGYLAPENGYLMEAAPE
430
>>XP_011525542 (OMIM: 180740) PREDICTED: U1 small nuclea (345 aa)
initn: 2146 init1: 2146 opt: 2146 Z-score: 1094.9 bits: 211.4 E(85289): 3e-54
Smith-Waterman score: 2146; 99.4% identity (100.0% similar) in 308 aa overlap (130-437:38-345)
100 110 120 130 140 150
pF1KB5 DAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHS
..::::::::::::::::::::::::::::
XP_011 RSKMRSNDCWWLVESRGWQTTDLKFSCCSARQIHMVYSKRSGKPRGYAFIEYEHERDMHS
10 20 30 40 50 60
160 170 180 190 200 210
pF1KB5 AYKHADGKKIDGRRVLVDVERGRTVKGWRPRRLGGGLGGTRRGGADVNIRHSGRDDTSRY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 AYKHADGKKIDGRRVLVDVERGRTVKGWRPRRLGGGLGGTRRGGADVNIRHSGRDDTSRY
70 80 90 100 110 120
220 230 240 250 260 270
pF1KB5 DERPGPSPLPHRDRDRDRERERRERSRERDKERERRRSRSRDRRRRSRSRDKEERRRSRE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 DERPGPSPLPHRDRDRDRERERRERSRERDKERERRRSRSRDRRRRSRSRDKEERRRSRE
130 140 150 160 170 180
280 290 300 310 320 330
pF1KB5 RSKDKDRDRKRRSSRSRERARRERERKEELRGGGGDMAEPSEAGDAPPDDGPPGELGPDG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 RSKDKDRDRKRRSSRSRERARRERERKEELRGGGGDMAEPSEAGDAPPDDGPPGELGPDG
190 200 210 220 230 240
340 350 360 370 380 390
pF1KB5 PDGPEEKGRDRDRERRRSHRSERERRRDRDRDRDRDREHKRGERGSERGRDEARGGGGGQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PDGPEEKGRDRDRERRRSHRSERERRRDRDRDRDRDREHKRGERGSERGRDEARGGGGGQ
250 260 270 280 290 300
400 410 420 430
pF1KB5 DNGLEGLGNDSRDMYMESEGGDGYLAPENGYLMEAAPE
::::::::::::::::::::::::::::::::::::::
XP_011 DNGLEGLGNDSRDMYMESEGGDGYLAPENGYLMEAAPE
310 320 330 340
>>NP_001287998 (OMIM: 180740) U1 small nuclear ribonucle (428 aa)
initn: 1707 init1: 1707 opt: 2019 Z-score: 1030.7 bits: 199.8 E(85289): 1.1e-50
Smith-Waterman score: 2960; 97.9% identity (97.9% similar) in 437 aa overlap (1-437:1-428)
10 20 30 40 50 60
pF1KB5 MTQFLPPNLLALFAPRDPIPYLPPLEKLPHEKHHNQPYCGIAPYIREFEDPRDAPPPTRA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MTQFLPPNLLALFAPRDPIPYLPPLEKLPHEKHHNQPYCGIAPYIREFEDPRDAPPPTRA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 ETREERMERKRREKIERRQQEVETELKMWDPHNDPNAQGDAFKTLFVARVNYDTTESKLR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ETREERMERKRREKIERRQQEVETELKMWDPHNDPNAQGDAFKTLFVARVNYDTTESKLR
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB5 REFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVER
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 REFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVER
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB5 GRTVKGWRPRRLGGGLGGTRRGGADVNIRHSGRDDTSRYDERPGPSPLPHRDRDRDRERE
:::::::::::::::::::::::::::::::::::::::::: :::::::::
NP_001 GRTVKGWRPRRLGGGLGGTRRGGADVNIRHSGRDDTSRYDER---------DRDRDRERE
190 200 210 220 230
250 260 270 280 290 300
pF1KB5 RRERSRERDKERERRRSRSRDRRRRSRSRDKEERRRSRERSKDKDRDRKRRSSRSRERAR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RRERSRERDKERERRRSRSRDRRRRSRSRDKEERRRSRERSKDKDRDRKRRSSRSRERAR
240 250 260 270 280 290
310 320 330 340 350 360
pF1KB5 RERERKEELRGGGGDMAEPSEAGDAPPDDGPPGELGPDGPDGPEEKGRDRDRERRRSHRS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RERERKEELRGGGGDMAEPSEAGDAPPDDGPPGELGPDGPDGPEEKGRDRDRERRRSHRS
300 310 320 330 340 350
370 380 390 400 410 420
pF1KB5 ERERRRDRDRDRDRDREHKRGERGSERGRDEARGGGGGQDNGLEGLGNDSRDMYMESEGG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ERERRRDRDRDRDRDREHKRGERGSERGRDEARGGGGGQDNGLEGLGNDSRDMYMESEGG
360 370 380 390 400 410
430
pF1KB5 DGYLAPENGYLMEAAPE
:::::::::::::::::
NP_001 DGYLAPENGYLMEAAPE
420
>>XP_005259235 (OMIM: 180740) PREDICTED: U1 small nuclea (122 aa)
initn: 876 init1: 876 opt: 876 Z-score: 467.9 bits: 93.9 E(85289): 2.5e-19
Smith-Waterman score: 876; 100.0% identity (100.0% similar) in 122 aa overlap (316-437:1-122)
290 300 310 320 330 340
pF1KB5 RDRKRRSSRSRERARRERERKEELRGGGGDMAEPSEAGDAPPDDGPPGELGPDGPDGPEE
::::::::::::::::::::::::::::::
XP_005 MAEPSEAGDAPPDDGPPGELGPDGPDGPEE
10 20 30
350 360 370 380 390 400
pF1KB5 KGRDRDRERRRSHRSERERRRDRDRDRDRDREHKRGERGSERGRDEARGGGGGQDNGLEG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 KGRDRDRERRRSHRSERERRRDRDRDRDRDREHKRGERGSERGRDEARGGGGGQDNGLEG
40 50 60 70 80 90
410 420 430
pF1KB5 LGNDSRDMYMESEGGDGYLAPENGYLMEAAPE
::::::::::::::::::::::::::::::::
XP_005 LGNDSRDMYMESEGGDGYLAPENGYLMEAAPE
100 110 120
>>XP_011525543 (OMIM: 180740) PREDICTED: U1 small nuclea (122 aa)
initn: 876 init1: 876 opt: 876 Z-score: 467.9 bits: 93.9 E(85289): 2.5e-19
Smith-Waterman score: 876; 100.0% identity (100.0% similar) in 122 aa overlap (316-437:1-122)
290 300 310 320 330 340
pF1KB5 RDRKRRSSRSRERARRERERKEELRGGGGDMAEPSEAGDAPPDDGPPGELGPDGPDGPEE
::::::::::::::::::::::::::::::
XP_011 MAEPSEAGDAPPDDGPPGELGPDGPDGPEE
10 20 30
350 360 370 380 390 400
pF1KB5 KGRDRDRERRRSHRSERERRRDRDRDRDRDREHKRGERGSERGRDEARGGGGGQDNGLEG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 KGRDRDRERRRSHRSERERRRDRDRDRDRDREHKRGERGSERGRDEARGGGGGQDNGLEG
40 50 60 70 80 90
410 420 430
pF1KB5 LGNDSRDMYMESEGGDGYLAPENGYLMEAAPE
::::::::::::::::::::::::::::::::
XP_011 LGNDSRDMYMESEGGDGYLAPENGYLMEAAPE
100 110 120
>>NP_001182356 (OMIM: 600813) serine/arginine-rich splic (221 aa)
initn: 339 init1: 182 opt: 349 Z-score: 203.0 bits: 45.7 E(85289): 0.00014
Smith-Waterman score: 349; 33.0% identity (58.0% similar) in 224 aa overlap (95-308:8-215)
70 80 90 100 110 120
pF1KB5 ERMERKRREKIERRQQEVETELKMWDPHNDPNAQGDAFKTLFVARVNYDTTESKLRREFE
:...: . .: : ..: :. . ::: ::
NP_001 MSYGRPPPDVEG--MTSLKVDNLTYRTSPDTLRRVFE
10 20 30
130 140 150 160 170 180
pF1KB5 VYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVER-GR-
:: . ... .. . . ::.::.... .:: ..:. :: .:::.. :.. : ::
NP_001 KYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRP
40 50 60 70 80 90
190 200 210 220 230
pF1KB5 -----TVKGWRPRRLGGGLGGTRRGGADVNIRHSGRDDTSRYDERPGPSPLPHRDRDRDR
. .: ::: ::: : ::. : : :: : :.:.:.:
NP_001 PDSHHSRRGPPPRRYGGG-GYGRRS------RSPRRRRRSRSRSRS-------RSRSRSR
100 110 120 130 140
240 250 260 270 280 290
pF1KB5 ERERRERSRERDKERERRRSRSRDRRRRSRSRDKEERRRSRERSKDKDRDR---KRRSSR
: : .:: : . : : :.::. :: . . .. : ::: ::....:. ..: :.
NP_001 SRYSRSKSRSRTRSRSRSTSKSRSARRSKSKSSSVSRSRSRSRSRSRSRSPPPVSKRESK
150 160 170 180 190 200
300 310 320 330 340 350
pF1KB5 SRERARRERERKEELRGGGGDMAEPSEAGDAPPDDGPPGELGPDGPDGPEEKGRDRDRER
:: :.. . ::
NP_001 SRSRSKSPPKSPEEEGAVSS
210 220
>>XP_016880431 (OMIM: 600813) PREDICTED: serine/arginine (221 aa)
initn: 339 init1: 182 opt: 349 Z-score: 203.0 bits: 45.7 E(85289): 0.00014
Smith-Waterman score: 349; 33.0% identity (58.0% similar) in 224 aa overlap (95-308:8-215)
70 80 90 100 110 120
pF1KB5 ERMERKRREKIERRQQEVETELKMWDPHNDPNAQGDAFKTLFVARVNYDTTESKLRREFE
:...: . .: : ..: :. . ::: ::
XP_016 MSYGRPPPDVEG--MTSLKVDNLTYRTSPDTLRRVFE
10 20 30
130 140 150 160 170 180
pF1KB5 VYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVER-GR-
:: . ... .. . . ::.::.... .:: ..:. :: .:::.. :.. : ::
XP_016 KYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRP
40 50 60 70 80 90
190 200 210 220 230
pF1KB5 -----TVKGWRPRRLGGGLGGTRRGGADVNIRHSGRDDTSRYDERPGPSPLPHRDRDRDR
. .: ::: ::: : ::. : : :: : :.:.:.:
XP_016 PDSHHSRRGPPPRRYGGG-GYGRRS------RSPRRRRRSRSRSRS-------RSRSRSR
100 110 120 130 140
240 250 260 270 280 290
pF1KB5 ERERRERSRERDKERERRRSRSRDRRRRSRSRDKEERRRSRERSKDKDRDR---KRRSSR
: : .:: : . : : :.::. :: . . .. : ::: ::....:. ..: :.
XP_016 SRYSRSKSRSRTRSRSRSTSKSRSARRSKSKSSSVSRSRSRSRSRSRSRSPPPVSKRESK
150 160 170 180 190 200
300 310 320 330 340 350
pF1KB5 SRERARRERERKEELRGGGGDMAEPSEAGDAPPDDGPPGELGPDGPDGPEEKGRDRDRER
:: :.. . ::
XP_016 SRSRSKSPPKSPEEEGAVSS
210 220
>>NP_003007 (OMIM: 600813) serine/arginine-rich splicing (221 aa)
initn: 339 init1: 182 opt: 349 Z-score: 203.0 bits: 45.7 E(85289): 0.00014
Smith-Waterman score: 349; 33.0% identity (58.0% similar) in 224 aa overlap (95-308:8-215)
70 80 90 100 110 120
pF1KB5 ERMERKRREKIERRQQEVETELKMWDPHNDPNAQGDAFKTLFVARVNYDTTESKLRREFE
:...: . .: : ..: :. . ::: ::
NP_003 MSYGRPPPDVEG--MTSLKVDNLTYRTSPDTLRRVFE
10 20 30
130 140 150 160 170 180
pF1KB5 VYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVER-GR-
:: . ... .. . . ::.::.... .:: ..:. :: .:::.. :.. : ::
NP_003 KYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRP
40 50 60 70 80 90
190 200 210 220 230
pF1KB5 -----TVKGWRPRRLGGGLGGTRRGGADVNIRHSGRDDTSRYDERPGPSPLPHRDRDRDR
. .: ::: ::: : ::. : : :: : :.:.:.:
NP_003 PDSHHSRRGPPPRRYGGG-GYGRRS------RSPRRRRRSRSRSRS-------RSRSRSR
100 110 120 130 140
240 250 260 270 280 290
pF1KB5 ERERRERSRERDKERERRRSRSRDRRRRSRSRDKEERRRSRERSKDKDRDR---KRRSSR
: : .:: : . : : :.::. :: . . .. : ::: ::....:. ..: :.
NP_003 SRYSRSKSRSRTRSRSRSTSKSRSARRSKSKSSSVSRSRSRSRSRSRSRSPPPVSKRESK
150 160 170 180 190 200
300 310 320 330 340 350
pF1KB5 SRERARRERERKEELRGGGGDMAEPSEAGDAPPDDGPPGELGPDGPDGPEEKGRDRDRER
:: :.. . ::
NP_003 SRSRSKSPPKSPEEEGAVSS
210 220
>>XP_005266369 (OMIM: 616453) PREDICTED: zinc finger CCC (1564 aa)
initn: 878 init1: 278 opt: 350 Z-score: 194.3 bits: 46.9 E(85289): 0.00044
Smith-Waterman score: 407; 29.8% identity (54.4% similar) in 362 aa overlap (45-393:476-801)
20 30 40 50 60 70
pF1KB5 PRDPIPYLPPLEKLPHEKHHNQPYCGIAPYIREFEDPRDAPPPTRAETREERMERKRREK
.:. .. :: :. :.:. : :. :.
XP_005 HRDDREPRDGRDRRDARDTRDRRELRDSRDMRDSREMRDYSRDTK-ESRDPRDSRSTRDA
450 460 470 480 490 500
80 90 100 110 120 130
pF1KB5 IERRQQEVETELKMWDPHNDPN-AQGDAFKTLFVARV---NYDTTESKLRREFEVYGPIK
. :..: . . : . . . . : .:. : . .::. . . . .: .
XP_005 HDYRDREGRDTHRKEDTYPEESRSYGRNHLREESSRTEIRNESRNESRSEIRNDRMGRSR
510 520 530 540 550 560
140 150 160 170 180
pF1KB5 -RIHMVYSKRSGKPRGYAFIEYEHERDMH------SAYKHADG-KKIDGRRVLVDVERGR
:. . : : :: . . . ..: :.: . : . :.: : :
XP_005 GRVPELPEKGSRGSRGSQIDSHSSNSNYHDSWETRSSYPERDRYPERDNRDQARDSSFER
570 580 590 600 610 620
190 200 210 220 230 240
pF1KB5 TVKGWRPRRLGGGLGGTRRGGADVNIRHSGRDDTSRYDERPGPSPLPHRDRDRDRERERR
.: : :: . : . :::.::.: . ::: . . : ::.. ..:
XP_005 R-HGERDRRD----NRERDQRPSSPIRHQGRNDELERDERREERRVDRVDDRRDERARER
630 640 650 660 670
250 260 270 280 290 300
pF1KB5 ERSRERDKERERRRSRSRDRRRRSRSRDKEERRRSRERSKDKDRDRKRRSSRSRERAR-R
.: ::::.::::.: : :::.:... . ..:: : ::: ..:.:::.: .:...: : :
XP_005 DRERERDRERERERERERDREREKERELERERAREREREREKERDRERDRDRDHDRERER
680 690 700 710 720 730
310 320 330 340 350 360
pF1KB5 ERERKEELRGGGGDMAEPSEAGDAPPDDGPPGELGPDGPDGPEEKGRDRDRERRRSHRSE
:::: : . : :.. :.:.:::.: .. :
XP_005 ERER---------DREKERER---------------------EREERERERERERERERE
740 750 760
370 380 390 400 410 420
pF1KB5 RERRRDRDRDRDRDREHKRGERGSERGRDEARGGGGGQDNGLEGLGNDSRDMYMESEGGD
:::.:.: :.::..::..: . ...:::. :
XP_005 RERERERARERDKERERQRDWEDKDKGRDDRREKREEIREDRNPRDGHDERKSKKRYRNE
770 780 790 800 810 820
430
pF1KB5 GYLAPENGYLMEAAPE
XP_005 GSPSPRQSPKRRREHSPDSDAYNSGDDKNEKHRLLSQVVRPQESRSLSPSHLTEDRQGRW
830 840 850 860 870 880
>>NP_055885 (OMIM: 616453) zinc finger CCCH domain-conta (1564 aa)
initn: 878 init1: 278 opt: 350 Z-score: 194.3 bits: 46.9 E(85289): 0.00044
Smith-Waterman score: 407; 29.8% identity (54.4% similar) in 362 aa overlap (45-393:476-801)
20 30 40 50 60 70
pF1KB5 PRDPIPYLPPLEKLPHEKHHNQPYCGIAPYIREFEDPRDAPPPTRAETREERMERKRREK
.:. .. :: :. :.:. : :. :.
NP_055 HRDDREPRDGRDRRDARDTRDRRELRDSRDMRDSREMRDYSRDTK-ESRDPRDSRSTRDA
450 460 470 480 490 500
80 90 100 110 120 130
pF1KB5 IERRQQEVETELKMWDPHNDPN-AQGDAFKTLFVARV---NYDTTESKLRREFEVYGPIK
. :..: . . : . . . . : .:. : . .::. . . . .: .
NP_055 HDYRDREGRDTHRKEDTYPEESRSYGRNHLREESSRTEIRNESRNESRSEIRNDRMGRSR
510 520 530 540 550 560
140 150 160 170 180
pF1KB5 -RIHMVYSKRSGKPRGYAFIEYEHERDMH------SAYKHADG-KKIDGRRVLVDVERGR
:. . : : :: . . . ..: :.: . : . :.: : :
NP_055 GRVPELPEKGSRGSRGSQIDSHSSNSNYHDSWETRSSYPERDRYPERDNRDQARDSSFER
570 580 590 600 610 620
190 200 210 220 230 240
pF1KB5 TVKGWRPRRLGGGLGGTRRGGADVNIRHSGRDDTSRYDERPGPSPLPHRDRDRDRERERR
.: : :: . : . :::.::.: . ::: . . : ::.. ..:
NP_055 R-HGERDRRD----NRERDQRPSSPIRHQGRNDELERDERREERRVDRVDDRRDERARER
630 640 650 660 670
250 260 270 280 290 300
pF1KB5 ERSRERDKERERRRSRSRDRRRRSRSRDKEERRRSRERSKDKDRDRKRRSSRSRERAR-R
.: ::::.::::.: : :::.:... . ..:: : ::: ..:.:::.: .:...: : :
NP_055 DRERERDRERERERERERDREREKERELERERAREREREREKERDRERDRDRDHDRERER
680 690 700 710 720 730
310 320 330 340 350 360
pF1KB5 ERERKEELRGGGGDMAEPSEAGDAPPDDGPPGELGPDGPDGPEEKGRDRDRERRRSHRSE
:::: : . : :.. :.:.:::.: .. :
NP_055 ERER---------DREKERER---------------------EREERERERERERERERE
740 750 760
370 380 390 400 410 420
pF1KB5 RERRRDRDRDRDRDREHKRGERGSERGRDEARGGGGGQDNGLEGLGNDSRDMYMESEGGD
:::.:.: :.::..::..: . ...:::. :
NP_055 RERERERARERDKERERQRDWEDKDKGRDDRREKREEIREDRNPRDGHDERKSKKRYRNE
770 780 790 800 810 820
430
pF1KB5 GYLAPENGYLMEAAPE
NP_055 GSPSPRQSPKRRREHSPDSDAYNSGDDKNEKHRLLSQVVRPQESRSLSPSHLTEDRQGRW
830 840 850 860 870 880
437 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 03:22:57 2016 done: Fri Nov 4 03:22:59 2016
Total Scan time: 11.090 Total Display time: 0.030
Function used was FASTA [36.3.4 Apr, 2011]