Result of FASTA (ccds) for
pF1KB5166
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB5166, 158 aa
1>>>pF1KB5166 158 - 158 aa - 158 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.4547+/-0.000735; mu= 6.6369+/- 0.044
mean_var=105.5651+/-21.460, 0's: 0 Z-trim(111.7): 104 B-trim: 5 in 1/50
Lambda= 0.124829
statistics sampled from 12437 (12555) to 12437 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.761), E-opt: 0.2 (0.386), width: 16
Scan time: 1.720
The best scores are: opt bits E(32554)
CCDS44567.1 LMO2 gene_id:4005|Hs108|chr11 ( 158) 1142 215.4 1.2e-56
CCDS7888.2 LMO2 gene_id:4005|Hs108|chr11 ( 227) 1142 215.5 1.6e-56
CCDS58118.1 LMO1 gene_id:4004|Hs108|chr11 ( 155) 578 113.8 4.3e-26
CCDS44534.1 LMO1 gene_id:4004|Hs108|chr11 ( 156) 578 113.8 4.4e-26
CCDS58211.1 LMO3 gene_id:55885|Hs108|chr12 ( 156) 567 111.8 1.7e-25
CCDS58212.1 LMO3 gene_id:55885|Hs108|chr12 ( 163) 567 111.9 1.8e-25
CCDS8678.1 LMO3 gene_id:55885|Hs108|chr12 ( 145) 565 111.5 2.1e-25
CCDS713.1 LMO4 gene_id:8543|Hs108|chr1 ( 165) 451 91.0 3.5e-19
CCDS30962.1 LHX9 gene_id:56956|Hs108|chr1 ( 388) 348 72.7 2.7e-13
CCDS1338.1 LHX4 gene_id:89884|Hs108|chr1 ( 390) 348 72.7 2.7e-13
CCDS1393.1 LHX9 gene_id:56956|Hs108|chr1 ( 397) 348 72.7 2.7e-13
CCDS6853.1 LHX2 gene_id:9355|Hs108|chr9 ( 406) 348 72.7 2.8e-13
CCDS6994.1 LHX3 gene_id:8022|Hs108|chr9 ( 397) 342 71.6 5.8e-13
CCDS6995.1 LHX3 gene_id:8022|Hs108|chr9 ( 402) 341 71.4 6.6e-13
CCDS10290.1 ISL2 gene_id:64843|Hs108|chr15 ( 359) 335 70.3 1.3e-12
CCDS11316.1 LHX1 gene_id:3975|Hs108|chr17 ( 406) 330 69.4 2.6e-12
CCDS43314.1 ISL1 gene_id:3670|Hs108|chr5 ( 349) 324 68.3 4.9e-12
CCDS58008.1 LHX8 gene_id:431707|Hs108|chr1 ( 346) 320 67.6 8.1e-12
CCDS30756.1 LHX8 gene_id:431707|Hs108|chr1 ( 356) 320 67.6 8.2e-12
CCDS6866.2 LMX1B gene_id:4010|Hs108|chr9 ( 395) 319 67.4 1e-11
CCDS55342.1 LMX1B gene_id:4010|Hs108|chr9 ( 402) 319 67.4 1e-11
CCDS55343.1 LMX1B gene_id:4010|Hs108|chr9 ( 406) 319 67.4 1e-11
CCDS9171.1 LHX5 gene_id:64211|Hs108|chr12 ( 402) 313 66.4 2.2e-11
CCDS1247.1 LMX1A gene_id:4009|Hs108|chr1 ( 382) 308 65.4 3.9e-11
>>CCDS44567.1 LMO2 gene_id:4005|Hs108|chr11 (158 aa)
initn: 1142 init1: 1142 opt: 1142 Z-score: 1130.7 bits: 215.4 E(32554): 1.2e-56
Smith-Waterman score: 1142; 100.0% identity (100.0% similar) in 158 aa overlap (1-158:1-158)
10 20 30 40 50 60
pF1KB5 MSSAIERKSLDPSEEPVDEVLQIPPSLLTCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 MSSAIERKSLDPSEEPVDEVLQIPPSLLTCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLC
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 GCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDKRIRAYEMTMRVKDKVYHLECF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 GCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDKRIRAYEMTMRVKDKVYHLECF
70 80 90 100 110 120
130 140 150
pF1KB5 KCAACQKHFCVGDRYLLINSDIVCEQDIYEWTKINGMI
::::::::::::::::::::::::::::::::::::::
CCDS44 KCAACQKHFCVGDRYLLINSDIVCEQDIYEWTKINGMI
130 140 150
>>CCDS7888.2 LMO2 gene_id:4005|Hs108|chr11 (227 aa)
initn: 1142 init1: 1142 opt: 1142 Z-score: 1128.4 bits: 215.5 E(32554): 1.6e-56
Smith-Waterman score: 1142; 100.0% identity (100.0% similar) in 158 aa overlap (1-158:70-227)
10 20 30
pF1KB5 MSSAIERKSLDPSEEPVDEVLQIPPSLLTC
::::::::::::::::::::::::::::::
CCDS78 APEGVRAPAAGQPRATKGAPPPPGTPPPSPMSSAIERKSLDPSEEPVDEVLQIPPSLLTC
40 50 60 70 80 90
40 50 60 70 80 90
pF1KB5 GGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 GGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQ
100 110 120 130 140 150
100 110 120 130 140 150
pF1KB5 DGLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFCVGDRYLLINSDIVCEQDIYE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 DGLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFCVGDRYLLINSDIVCEQDIYE
160 170 180 190 200 210
pF1KB5 WTKINGMI
::::::::
CCDS78 WTKINGMI
220
>>CCDS58118.1 LMO1 gene_id:4004|Hs108|chr11 (155 aa)
initn: 653 init1: 565 opt: 578 Z-score: 581.8 bits: 113.8 E(32554): 4.3e-26
Smith-Waterman score: 578; 59.1% identity (81.9% similar) in 127 aa overlap (30-156:23-148)
10 20 30 40 50 60
pF1KB5 MSSAIERKSLDPSEEPVDEVLQIPPSLLTCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLC
:.::...: :::.:::.:.:::::::.: :
CCDS58 MVLDQEDGVPMLSVQPKGKQKGCAGCNRKIKDRYLLKALDKYWHEDCLKCACC
10 20 30 40 50
70 80 90 100 110 120
pF1KB5 GCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDKRIRAYEMTMRVKDKVYHLECF
::::::: :: : . ::::::::::: : ::.:.: : :.::.::..:.::::.::
CCDS58 DCRLGEVGSTLYTKANLILCRRDYLRLFGTTGNCAACSKLIPAFEMVMRARDNVYHLDCF
60 70 80 90 100 110
130 140 150
pF1KB5 KCAACQKHFCVGDRYLLINSDIVCEQDIYEWTKINGMI
: :...:::::...: :. :.:..: :: ..::
CCDS58 ACQLCNQRFCVGDKFFLKNNMILCQMD-YEEGQLNGTFESQVQ
120 130 140 150
>>CCDS44534.1 LMO1 gene_id:4004|Hs108|chr11 (156 aa)
initn: 653 init1: 565 opt: 578 Z-score: 581.8 bits: 113.8 E(32554): 4.4e-26
Smith-Waterman score: 578; 59.1% identity (81.9% similar) in 127 aa overlap (30-156:24-149)
10 20 30 40 50 60
pF1KB5 MSSAIERKSLDPSEEPVDEVLQIPPSLLTCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLC
:.::...: :::.:::.:.:::::::.: :
CCDS44 MMVLDKEDGVPMLSVQPKGKQKGCAGCNRKIKDRYLLKALDKYWHEDCLKCACC
10 20 30 40 50
70 80 90 100 110 120
pF1KB5 GCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDKRIRAYEMTMRVKDKVYHLECF
::::::: :: : . ::::::::::: : ::.:.: : :.::.::..:.::::.::
CCDS44 DCRLGEVGSTLYTKANLILCRRDYLRLFGTTGNCAACSKLIPAFEMVMRARDNVYHLDCF
60 70 80 90 100 110
130 140 150
pF1KB5 KCAACQKHFCVGDRYLLINSDIVCEQDIYEWTKINGMI
: :...:::::...: :. :.:..: :: ..::
CCDS44 ACQLCNQRFCVGDKFFLKNNMILCQMD-YEEGQLNGTFESQVQ
120 130 140 150
>>CCDS58211.1 LMO3 gene_id:55885|Hs108|chr12 (156 aa)
initn: 640 init1: 552 opt: 567 Z-score: 571.1 bits: 111.8 E(32554): 1.7e-25
Smith-Waterman score: 567; 56.0% identity (78.4% similar) in 134 aa overlap (19-150:11-144)
10 20 30 40 50
pF1KB5 MSSAIERKSLDPSEEPVDEVLQIPPSLLT--CGGCQQNIGDRYFLKAIDQYWHEDCLSCD
..:.. :. :.::...: :::.:::.:.:::::::.:
CCDS58 MQKKEKSFGIQMLSVQPDTKPKGCAGCNRKIKDRYLLKALDKYWHEDCLKCA
10 20 30 40 50
60 70 80 90 100 110
pF1KB5 LCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDKRIRAYEMTMRVKDKVYHLE
: ::::::: :: : . ::::::::::: : ::.:.: : :.::.::.::.::::.
CCDS58 CCDCRLGEVGSTLYTKANLILCRRDYLRLFGVTGNCAACSKLIPAFEMVMRAKDNVYHLD
60 70 80 90 100 110
120 130 140 150
pF1KB5 CFKCAACQKHFCVGDRYLLINSDIVCEQDIYEWTKINGMI
:: : :...:::::...: :. :.:. : :
CCDS58 CFACQLCNQRFCVGDKFFLKNNMILCQTDYEEGLMKEGYAPQVR
120 130 140 150
>>CCDS58212.1 LMO3 gene_id:55885|Hs108|chr12 (163 aa)
initn: 640 init1: 552 opt: 567 Z-score: 570.8 bits: 111.9 E(32554): 1.8e-25
Smith-Waterman score: 567; 56.0% identity (78.4% similar) in 134 aa overlap (19-150:18-151)
10 20 30 40 50
pF1KB5 MSSAIERKSLDPSEEPVDEVLQIPPSLLT--CGGCQQNIGDRYFLKAIDQYWHEDCLSCD
..:.. :. :.::...: :::.:::.:.:::::::.:
CCDS58 MLMEGGRAAAARNVSSIQMLSVQPDTKPKGCAGCNRKIKDRYLLKALDKYWHEDCLKCA
10 20 30 40 50
60 70 80 90 100 110
pF1KB5 LCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDKRIRAYEMTMRVKDKVYHLE
: ::::::: :: : . ::::::::::: : ::.:.: : :.::.::.::.::::.
CCDS58 CCDCRLGEVGSTLYTKANLILCRRDYLRLFGVTGNCAACSKLIPAFEMVMRAKDNVYHLD
60 70 80 90 100 110
120 130 140 150
pF1KB5 CFKCAACQKHFCVGDRYLLINSDIVCEQDIYEWTKINGMI
:: : :...:::::...: :. :.:. : :
CCDS58 CFACQLCNQRFCVGDKFFLKNNMILCQTDYEEGLMKEGYAPQVR
120 130 140 150 160
>>CCDS8678.1 LMO3 gene_id:55885|Hs108|chr12 (145 aa)
initn: 640 init1: 552 opt: 565 Z-score: 569.6 bits: 111.5 E(32554): 2.1e-25
Smith-Waterman score: 565; 60.3% identity (81.0% similar) in 121 aa overlap (30-150:13-133)
10 20 30 40 50 60
pF1KB5 MSSAIERKSLDPSEEPVDEVLQIPPSLLTCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLC
:.::...: :::.:::.:.:::::::.: :
CCDS86 MLSVQPDTKPKGCAGCNRKIKDRYLLKALDKYWHEDCLKCACC
10 20 30 40
70 80 90 100 110 120
pF1KB5 GCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDKRIRAYEMTMRVKDKVYHLECF
::::::: :: : . ::::::::::: : ::.:.: : :.::.::.::.::::.::
CCDS86 DCRLGEVGSTLYTKANLILCRRDYLRLFGVTGNCAACSKLIPAFEMVMRAKDNVYHLDCF
50 60 70 80 90 100
130 140 150
pF1KB5 KCAACQKHFCVGDRYLLINSDIVCEQDIYEWTKINGMI
: :...:::::...: :. :.:. : :
CCDS86 ACQLCNQRFCVGDKFFLKNNMILCQTDYEEGLMKEGYAPQVR
110 120 130 140
>>CCDS713.1 LMO4 gene_id:8543|Hs108|chr1 (165 aa)
initn: 492 init1: 436 opt: 451 Z-score: 457.8 bits: 91.0 E(32554): 3.5e-19
Smith-Waterman score: 451; 43.4% identity (69.2% similar) in 143 aa overlap (22-158:9-150)
10 20 30 40 50
pF1KB5 MSSAIERKSLDPSEEPVDEVLQIPP------SLLTCGGCQQNIGDRYFLKAIDQYWHEDC
: :: : :.:: .:.::..: :.:.::: :
CCDS71 MVNPGSSSQPPPVTAGSLSWKRCAGCGGKIADRFLLYAMDSYWHSRC
10 20 30 40
60 70 80 90 100 110
pF1KB5 LSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDKRIRAYEMTMRVKDKV
:.:. : .::..: : : : ::: ::.::::..: :..: . : : :..::.. .:
CCDS71 LKCSCCQAQLGDIGTSCYTKSGMILCRNDYIRLFGNSGACSACGQSIPASELVMRAQGNV
50 60 70 80 90 100
120 130 140 150
pF1KB5 YHLECFKCAACQKHFCVGDRYLLINSDIVCEQDIYEWTKINGMI
:::.:: :..:.... :::. ::... ::.: . ::: .
CCDS71 YHLKCFTCSTCRNRLVPGDRFHYINGSLFCEHD-RPTALINGHLNSLQSNPLLPDQKVC
110 120 130 140 150 160
>>CCDS30962.1 LHX9 gene_id:56956|Hs108|chr1 (388 aa)
initn: 347 init1: 181 opt: 348 Z-score: 352.2 bits: 72.7 E(32554): 2.7e-13
Smith-Waterman score: 348; 42.1% identity (66.1% similar) in 121 aa overlap (25-144:59-174)
10 20 30 40 50
pF1KB5 MSSAIERKSLDPSEEPVDEVLQIPPSLLTCGGCQQNIGDRYFLKAIDQYWHEDC
:.: :.:: .:.:::.: :.:. :: :
CCDS30 ERRSKTEARLAKGAQLNGRDAGMPPLSPEKPAL--CAGCGGKISDRYYLLAVDKQWHLRC
30 40 50 60 70 80
60 70 80 90 100 110
pF1KB5 LSCDLCGCRLG-EVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDKRIRAYEMTMRVKDK
:.: : :.:. : . : : :..:: : :. . :: : : : ::.::..:.
CCDS30 LKC--CECKLALESELTCFAKDGSIYCKEDYYRRFSVQR-CARCHLGISASEMVMRARDS
90 100 110 120 130 140
120 130 140 150
pF1KB5 VYHLECFKCAACQKHFCVGDRYLLINSDIVCEQDIYEWTKINGMI
:::: :: :..:.: . .::.. . .: . :
CCDS30 VYHLSCFTCSTCNKTLTTGDHFGMKDSLVYCRAHFETLLQGEYPPQLSYTELAAKSGGLA
150 160 170 180 190 200
CCDS30 LPYFNGTGTVQKGRPRKRKSPALGVDIVNYNSGCNENEADHLDRDQQPYPPSQKTKRMRT
210 220 230 240 250 260
>>CCDS1338.1 LHX4 gene_id:89884|Hs108|chr1 (390 aa)
initn: 286 init1: 124 opt: 348 Z-score: 352.2 bits: 72.7 E(32554): 2.7e-13
Smith-Waterman score: 348; 34.2% identity (68.5% similar) in 149 aa overlap (12-155:8-150)
10 20 30 40 50
pF1KB5 MSSAIERKSLDPSEEPVD---EVLQIPPSLLT-CGGCQQNIGDRYFLKAIDQYWHEDCLS
:.: : :.: .: . . :.::.:.: :...::..:..:: .::.
CCDS13 MMQSATVPAEGAVKGLPEMLGVPMQQIPQCAGCNQHILDKFILKVLDRHWHSSCLK
10 20 30 40 50
60 70 80 90 100 110
pF1KB5 CDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDKRIRAYEMTMRVKDKVYH
: : .:.. : . . : :..:... :: :..:.. : ... ...: :::
CCDS13 CADCQMQLAD---RCFSRAGSVYCKEDFFKRFGTK--CTACQQGIPPTQVVRKAQDFVYH
60 70 80 90 100 110
120 130 140 150
pF1KB5 LECFKCAACQKHFCVGDR-YLLINSDIVCEQDIYEWTKINGMI
:.:: : :.... .::. ::. .. .::..: :: .: :
CCDS13 LHCFACIICNRQLATGDEFYLMEDGRLVCKED-YETAKQNDDSEAGAKRPRTTITAKQLE
120 130 140 150 160 170
CCDS13 TLKNAYKNSPKPARHVREQLSSETGLDMRVVQVWFQNRRAKEKRLKKDAGRHRWGQFYKS
180 190 200 210 220 230
158 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 03:22:22 2016 done: Fri Nov 4 03:22:22 2016
Total Scan time: 1.720 Total Display time: -0.020
Function used was FASTA [36.3.4 Apr, 2011]