Result of FASTA (ccds) for pF1KB5162 
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB5162, 217 aa
  1>>>pF1KB5162 217 - 217 aa - 217 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.3586+/-0.00117; mu= 2.9162+/- 0.068
 mean_var=198.8076+/-44.709, 0's: 0 Z-trim(107.6): 219  B-trim: 0 in 0/50
 Lambda= 0.090962
 statistics sampled from 9404 (9684) to 9404 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.681), E-opt: 0.2 (0.297), width:  16
 Scan time:  2.030

The best scores are:                                      opt bits E(32554)
CCDS11721.1 GRB2 gene_id:2885|Hs108|chr17          ( 217) 1519 211.9 2.6e-55
CCDS11202.1 GRAP gene_id:10750|Hs108|chr17         ( 217)  930 134.6 4.7e-32
CCDS11722.1 GRB2 gene_id:2885|Hs108|chr17          ( 176)  836 122.1 2.1e-28
CCDS13999.1 GRAP2 gene_id:9402|Hs108|chr22         ( 330)  570 87.5   1e-17
CCDS45627.1 GRAPL gene_id:400581|Hs108|chr17       ( 118)  460 72.6 1.2e-13
CCDS82085.1 GRAP gene_id:10750|Hs108|chr17         ( 205)  460 72.9 1.7e-13


>>CCDS11721.1 GRB2 gene_id:2885|Hs108|chr17               (217 aa)
 initn: 1519 init1: 1519 opt: 1519  Z-score: 1106.6  bits: 211.9 E(32554): 2.6e-55
Smith-Waterman score: 1519; 100.0% identity (100.0% similar) in 217 aa overlap (1-217:1-217)

               10        20        30        40        50        60
pF1KB5 MEAIAKYDFKATADDELSFKRGDILKVLNEECDQNWYKAELNGKDGFIPKNYIEMKPHPW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MEAIAKYDFKATADDELSFKRGDILKVLNEECDQNWYKAELNGKDGFIPKNYIEMKPHPW
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 FFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAGKYFL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 FFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAGKYFL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB5 WVVKFNSLNELVDYHRSTSVSRNQQIFLRDIEQVPQQPTYVQALFDFDPQEDGELGFRRG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 WVVKFNSLNELVDYHRSTSVSRNQQIFLRDIEQVPQQPTYVQALFDFDPQEDGELGFRRG
              130       140       150       160       170       180

              190       200       210       
pF1KB5 DFIHVMDNSDPNWWKGACHGQTGMFPRNYVTPVNRNV
       :::::::::::::::::::::::::::::::::::::
CCDS11 DFIHVMDNSDPNWWKGACHGQTGMFPRNYVTPVNRNV
              190       200       210       

>>CCDS11202.1 GRAP gene_id:10750|Hs108|chr17              (217 aa)
 initn: 934 init1: 724 opt: 930  Z-score: 688.9  bits: 134.6 E(32554): 4.7e-32
Smith-Waterman score: 930; 59.7% identity (85.6% similar) in 216 aa overlap (1-214:1-216)

               10        20        30        40        50        60
pF1KB5 MEAIAKYDFKATADDELSFKRGDILKVLNEECDQNWYKAELNGKDGFIPKNYIEMKPHPW
       ::..: :.:.:: .:::.:..:: ::.:: : ::::::::: : .::::::::..:::::
CCDS11 MESVALYSFQATESDELAFNKGDTLKILNMEDDQNWYKAELRGVEGFIPKNYIRVKPHPW
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 FFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAGKYFL
       . :.: :  :::.: :. : ::::::::::.::.::.::..:..::::::::...:::::
CCDS11 YSGRISRQLAEEILMKRNHLGAFLIRESESSPGEFSVSVNYGDQVQHFKVLREASGKYFL
               70        80        90       100       110       120

              130       140       150         160       170        
pF1KB5 WVVKFNSLNELVDYHRSTSVSRNQQIFLRDIEQVPQQP--TYVQALFDFDPQEDGELGFR
       :  ::::::::::..:.:......:::::: : . ..:   ..:: :::. :. ..:.::
CCDS11 WEEKFNSLNELVDFYRTTTIAKKRQIFLRDEEPLLKSPGACFAQAQFDFSAQDPSQLSFR
              130       140       150       160       170       180

      180       190       200       210       
pF1KB5 RGDFIHVMDNSDPNWWKGACHGQTGMFPRNYVTPVNRNV
       :::.:.:..  ::.::.:   :..:.:::.:: ::.   
CCDS11 RGDIIEVLERPDPHWWRGRSCGRVGFFPRSYVQPVHL  
              190       200       210         

>>CCDS11722.1 GRB2 gene_id:2885|Hs108|chr17               (176 aa)
 initn: 836 init1: 836 opt: 836  Z-score: 623.3  bits: 122.1 E(32554): 2.1e-28
Smith-Waterman score: 1152; 81.1% identity (81.1% similar) in 217 aa overlap (1-217:1-176)

               10        20        30        40        50        60
pF1KB5 MEAIAKYDFKATADDELSFKRGDILKVLNEECDQNWYKAELNGKDGFIPKNYIEMKPHPW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: 
CCDS11 MEAIAKYDFKATADDELSFKRGDILKVLNEECDQNWYKAELNGKDGFIPKNYIEMKPHP-
               10        20        30        40        50          

               70        80        90       100       110       120
pF1KB5 FFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAGKYFL
                                               ::::::::::::::::::::
CCDS11 ----------------------------------------FGNDVQHFKVLRDGAGKYFL
                                              60        70         

              130       140       150       160       170       180
pF1KB5 WVVKFNSLNELVDYHRSTSVSRNQQIFLRDIEQVPQQPTYVQALFDFDPQEDGELGFRRG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 WVVKFNSLNELVDYHRSTSVSRNQQIFLRDIEQVPQQPTYVQALFDFDPQEDGELGFRRG
      80        90       100       110       120       130         

              190       200       210       
pF1KB5 DFIHVMDNSDPNWWKGACHGQTGMFPRNYVTPVNRNV
       :::::::::::::::::::::::::::::::::::::
CCDS11 DFIHVMDNSDPNWWKGACHGQTGMFPRNYVTPVNRNV
     140       150       160       170      

>>CCDS13999.1 GRAP2 gene_id:9402|Hs108|chr22              (330 aa)
 initn: 784 init1: 328 opt: 570  Z-score: 431.4  bits: 87.5 E(32554): 1e-17
Smith-Waterman score: 570; 53.3% identity (84.7% similar) in 150 aa overlap (1-150:1-147)

               10        20        30        40        50        60
pF1KB5 MEAIAKYDFKATADDELSFKRGDILKVLNEECDQNWYKAELNGKDGFIPKNYIEMKPHPW
       :::.::.:: :...:::::. ::.::.:...  ..:.::::....:..:::.:...   :
CCDS13 MEAVAKFDFTASGEDELSFHTGDVLKILSNQ--EEWFKAELGSQEGYVPKNFIDIQFPKW
               10        20        30          40        50        

               70        80        90       100       110       120
pF1KB5 FFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAGKYFL
       :   . : .::..:   .. : :.:: :.:.:::::.::.  .:::::::.::. :.:::
CCDS13 FHEGLSRHQAENLLMG-KEVGFFIIRASQSSPGDFSISVRHEDDVQHFKVMRDNKGNYFL
       60        70         80        90       100       110       

              130       140       150       160       170       180
pF1KB5 WVVKFNSLNELVDYHRSTSVSRNQQIFLRDIEQVPQQPTYVQALFDFDPQEDGELGFRRG
       :. :: :::.::::.:..:.::..::::::                              
CCDS13 WTEKFPSLNKLVDYYRTNSISRQKQIFLRDRTREDQGHRGNSLDRRSQGGPHLSGAVGEE
       120       130       140       150       160       170       

>>CCDS45627.1 GRAPL gene_id:400581|Hs108|chr17            (118 aa)
 initn: 460 init1: 460 opt: 460  Z-score: 358.7  bits: 72.6 E(32554): 1.2e-13
Smith-Waterman score: 460; 66.7% identity (85.9% similar) in 99 aa overlap (1-99:1-99)

               10        20        30        40        50        60
pF1KB5 MEAIAKYDFKATADDELSFKRGDILKVLNEECDQNWYKAELNGKDGFIPKNYIEMKPHPW
       ::..: :.:.:: .:::.:..:: ::.:: : ::::::::: : .::::::::..:::::
CCDS45 MESVALYSFQATESDELAFNKGDTLKILNMEDDQNWYKAELRGVEGFIPKNYIRVKPHPW
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 FFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAGKYFL
       . :.: :  :::.: :. : ::::::::::.::.::.::                     
CCDS45 YSGRISRQLAEEILMKRNHLGAFLIRESESSPGEFSVSVNNRAQRGPCLGPKSHSRLG  
               70        80        90       100       110          

              130       140       150       160       170       180
pF1KB5 WVVKFNSLNELVDYHRSTSVSRNQQIFLRDIEQVPQQPTYVQALFDFDPQEDGELGFRRG

>>CCDS82085.1 GRAP gene_id:10750|Hs108|chr17              (205 aa)
 initn: 460 init1: 460 opt: 460  Z-score: 355.8  bits: 72.9 E(32554): 1.7e-13
Smith-Waterman score: 460; 66.7% identity (85.9% similar) in 99 aa overlap (1-99:1-99)

               10        20        30        40        50        60
pF1KB5 MEAIAKYDFKATADDELSFKRGDILKVLNEECDQNWYKAELNGKDGFIPKNYIEMKPHPW
       ::..: :.:.:: .:::.:..:: ::.:: : ::::::::: : .::::::::..:::::
CCDS82 MESVALYSFQATESDELAFNKGDTLKILNMEDDQNWYKAELRGVEGFIPKNYIRVKPHPW
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 FFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAGKYFL
       . :.: :  :::.: :. : ::::::::::.::.::.::                     
CCDS82 YSGRISRQLAEEILMKRNHLGAFLIRESESSPGEFSVSVNHLGPALPRPSLTSQPRTPRS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB5 WVVKFNSLNELVDYHRSTSVSRNQQIFLRDIEQVPQQPTYVQALFDFDPQEDGELGFRRG
                                                                   
CCDS82 SASAVATSLRSWSAQTPTGGGAGPAGALASSHGVTCSPCTCEQPGGRSGQRAFLQELRSR
              130       140       150       160       170       180




217 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 16:14:16 2016 done: Thu Nov  3 16:14:17 2016
 Total Scan time:  2.030 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]
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