FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB5159, 196 aa
1>>>pF1KB5159 196 - 196 aa - 196 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.2451+/-0.000858; mu= 13.6867+/- 0.052
mean_var=76.2000+/-15.203, 0's: 0 Z-trim(108.0): 184 B-trim: 301 in 1/49
Lambda= 0.146925
statistics sampled from 9721 (9935) to 9721 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.698), E-opt: 0.2 (0.305), width: 16
Scan time: 1.600
The best scores are: opt bits E(32554)
CCDS1699.1 RHOB gene_id:388|Hs108|chr2 ( 196) 1324 289.7 8e-79
CCDS2795.1 RHOA gene_id:387|Hs108|chr3 ( 193) 1122 246.8 6.1e-66
CCDS854.1 RHOC gene_id:389|Hs108|chr1 ( 193) 1114 245.1 2e-65
CCDS82775.1 RHOA gene_id:387|Hs108|chr3 ( 187) 902 200.2 6.5e-52
CCDS5348.1 RAC1 gene_id:5879|Hs108|chr7 ( 192) 704 158.2 2.9e-39
CCDS33191.1 RHOQ gene_id:23433|Hs108|chr2 ( 205) 689 155.1 2.7e-38
CCDS11798.1 RAC3 gene_id:5881|Hs108|chr17 ( 192) 687 154.6 3.5e-38
CCDS13945.1 RAC2 gene_id:5880|Hs108|chr22 ( 192) 684 154.0 5.4e-38
CCDS7748.1 RHOG gene_id:391|Hs108|chr11 ( 191) 674 151.9 2.3e-37
CCDS221.1 CDC42 gene_id:998|Hs108|chr1 ( 191) 661 149.1 1.6e-36
CCDS222.1 CDC42 gene_id:998|Hs108|chr1 ( 191) 660 148.9 1.8e-36
CCDS8155.1 RHOD gene_id:29984|Hs108|chr11 ( 210) 659 148.7 2.3e-36
CCDS2190.1 RND3 gene_id:390|Hs108|chr2 ( 244) 643 145.4 2.7e-35
CCDS9757.1 RHOJ gene_id:57381|Hs108|chr14 ( 214) 622 140.9 5.3e-34
CCDS11452.1 RND2 gene_id:8153|Hs108|chr17 ( 227) 609 138.1 3.8e-33
CCDS9222.1 RHOF gene_id:54509|Hs108|chr12 ( 211) 604 137.1 7.4e-33
CCDS1575.1 RHOU gene_id:58480|Hs108|chr1 ( 258) 593 134.8 4.4e-32
CCDS10068.1 RHOV gene_id:171177|Hs108|chr15 ( 236) 552 126.1 1.7e-29
CCDS8771.1 RND1 gene_id:27289|Hs108|chr12 ( 232) 543 124.2 6.2e-29
CCDS3458.1 RHOH gene_id:399|Hs108|chr4 ( 191) 507 116.5 1.1e-26
CCDS5349.1 RAC1 gene_id:5879|Hs108|chr7 ( 211) 357 84.7 4.3e-17
CCDS82774.1 RHOA gene_id:387|Hs108|chr3 ( 90) 337 80.2 4.2e-16
CCDS6034.1 RHOBTB2 gene_id:23221|Hs108|chr8 ( 727) 332 79.8 4.4e-15
CCDS55211.1 RHOBTB2 gene_id:23221|Hs108|chr8 ( 734) 332 79.8 4.4e-15
CCDS55210.1 RHOBTB2 gene_id:23221|Hs108|chr8 ( 749) 332 79.8 4.5e-15
CCDS7261.1 RHOBTB1 gene_id:9886|Hs108|chr10 ( 696) 330 79.4 5.7e-15
CCDS31613.1 RAB1B gene_id:81876|Hs108|chr11 ( 201) 277 67.7 5.2e-12
CCDS14156.1 RAB9A gene_id:9367|Hs108|chrX ( 201) 275 67.3 7e-12
CCDS46306.1 RAB1A gene_id:5861|Hs108|chr2 ( 205) 275 67.3 7.1e-12
CCDS11703.1 RAB37 gene_id:326624|Hs108|chr17 ( 216) 272 66.7 1.2e-11
CCDS9003.1 RAB21 gene_id:23011|Hs108|chr12 ( 225) 271 66.5 1.4e-11
CCDS41846.1 RAB35 gene_id:11021|Hs108|chr12 ( 201) 269 66.0 1.7e-11
CCDS82198.1 RAB37 gene_id:326624|Hs108|chr17 ( 196) 268 65.8 1.9e-11
CCDS32722.1 RAB37 gene_id:326624|Hs108|chr17 ( 223) 268 65.9 2.1e-11
CCDS54161.1 RAB37 gene_id:326624|Hs108|chr17 ( 228) 268 65.9 2.2e-11
CCDS1058.1 RAB13 gene_id:5872|Hs108|chr1 ( 203) 267 65.6 2.3e-11
CCDS10183.1 RAB8B gene_id:51762|Hs108|chr15 ( 207) 267 65.6 2.3e-11
CCDS3747.1 RAB33B gene_id:83452|Hs108|chr4 ( 229) 267 65.7 2.5e-11
CCDS76691.1 RAB15 gene_id:376267|Hs108|chr14 ( 212) 266 65.4 2.8e-11
CCDS2131.1 RALB gene_id:5899|Hs108|chr2 ( 206) 265 65.2 3.1e-11
CCDS7698.1 HRAS gene_id:3265|Hs108|chr11 ( 189) 263 64.7 3.9e-11
CCDS5460.1 RALA gene_id:5898|Hs108|chr7 ( 206) 263 64.8 4.2e-11
CCDS14766.1 RAB39B gene_id:116442|Hs108|chrX ( 213) 262 64.6 5e-11
CCDS14515.1 RAB9B gene_id:51209|Hs108|chrX ( 201) 261 64.3 5.5e-11
CCDS12339.1 RAB8A gene_id:4218|Hs108|chr19 ( 207) 260 64.1 6.5e-11
CCDS10212.1 RAB11A gene_id:8766|Hs108|chr15 ( 216) 258 63.7 9e-11
>>CCDS1699.1 RHOB gene_id:388|Hs108|chr2 (196 aa)
initn: 1324 init1: 1324 opt: 1324 Z-score: 1528.6 bits: 289.7 E(32554): 8e-79
Smith-Waterman score: 1324; 100.0% identity (100.0% similar) in 196 aa overlap (1-196:1-196)
10 20 30 40 50 60
pF1KB5 MAAIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS16 MAAIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 AGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS16 AGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKD
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB5 LRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAKTKEGVREVFETATRAALQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS16 LRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAKTKEGVREVFETATRAALQ
130 140 150 160 170 180
190
pF1KB5 KRYGSQNGCINCCKVL
::::::::::::::::
CCDS16 KRYGSQNGCINCCKVL
190
>>CCDS2795.1 RHOA gene_id:387|Hs108|chr3 (193 aa)
initn: 1130 init1: 1110 opt: 1122 Z-score: 1297.3 bits: 246.8 E(32554): 6.1e-66
Smith-Waterman score: 1122; 85.3% identity (94.8% similar) in 191 aa overlap (1-190:1-191)
10 20 30 40 50 60
pF1KB5 MAAIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDT
:::::::::.::::::::::::::::::.:::::::::::::::::::::::::::::::
CCDS27 MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 AGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKD
:::::::::::::::::::::::::.:::::::::::::.:::::::::::::::.::::
CCDS27 AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB5 LRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAKTKEGVREVFETATRAALQ
::.:::.: :::.::::::. ..:: :: :: :. :.:::::::.::::::: :::::::
CCDS27 LRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ
130 140 150 160 170 180
190
pF1KB5 KRYGSQ-NGCINCCKVL
: :.. .::.
CCDS27 ARRGKKKSGCLVL
190
>>CCDS854.1 RHOC gene_id:389|Hs108|chr1 (193 aa)
initn: 1127 init1: 1107 opt: 1114 Z-score: 1288.1 bits: 245.1 E(32554): 2e-65
Smith-Waterman score: 1114; 85.8% identity (95.3% similar) in 190 aa overlap (1-189:1-190)
10 20 30 40 50 60
pF1KB5 MAAIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDT
:::::::::.::::::::::::::::::.:::::::::::::.:::::::::::::::::
CCDS85 MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 AGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKD
:::::::::::::::::::::::::.:::::::::::::.:::::::::::::::.::::
CCDS85 AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB5 LRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAKTKEGVREVFETATRAALQ
::.:::.: :::.:::::::...:: :: ::.:. ::::::::::::::::: ::::.::
CCDS85 LRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFEMATRAGLQ
130 140 150 160 170 180
190
pF1KB5 KRYGSQN-GCINCCKVL
: ... ::
CCDS85 VRKNKRRRGCPIL
190
>>CCDS82775.1 RHOA gene_id:387|Hs108|chr3 (187 aa)
initn: 916 init1: 902 opt: 902 Z-score: 1045.4 bits: 200.2 E(32554): 6.5e-52
Smith-Waterman score: 902; 93.5% identity (99.3% similar) in 138 aa overlap (1-138:1-138)
10 20 30 40 50 60
pF1KB5 MAAIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDT
:::::::::.::::::::::::::::::.:::::::::::::::::::::::::::::::
CCDS82 MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 AGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKD
:::::::::::::::::::::::::.:::::::::::::.:::::::::::::::.::::
CCDS82 AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB5 LRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAKTKEGVREVFETATRAALQ
::.:::.: :::.:::::
CCDS82 LRNDEHTRRELAKMKQEPHCVARLECCGTILAQLQPPPPRFKRFPCLSLLSSWGYRRPLP
130 140 150 160 170 180
>>CCDS5348.1 RAC1 gene_id:5879|Hs108|chr7 (192 aa)
initn: 727 init1: 698 opt: 704 Z-score: 818.5 bits: 158.2 E(32554): 2.9e-39
Smith-Waterman score: 704; 59.8% identity (78.2% similar) in 179 aa overlap (1-179:1-177)
10 20 30 40 50 60
pF1KB5 MAAIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDT
: :: : ::::::: ::::::: .. . :: :.::::.:: :.. :::: :.:.::::
CCDS53 MQAI--KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDT
10 20 30 40 50
70 80 90 100 110 120
pF1KB5 AGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKD
:::::::::::::::.:::.:.:::. :: :.::. :: :::.: :::.:::::..: :
CCDS53 AGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLD
60 70 80 90 100 110
130 140 150 160 170 180
pF1KB5 LRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAKTKEGVREVFETATRAALQ
::.:. . .: . : :. .: ::: .: : :::::: :..:.. ::. : ::.:
CCDS53 LRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLC
120 130 140 150 160 170
190
pF1KB5 KRYGSQNGCINCCKVL
CCDS53 PPPVKKRKRKCLLL
180 190
>>CCDS33191.1 RHOQ gene_id:23433|Hs108|chr2 (205 aa)
initn: 699 init1: 637 opt: 689 Z-score: 800.9 bits: 155.1 E(32554): 2.7e-38
Smith-Waterman score: 689; 52.0% identity (78.0% similar) in 200 aa overlap (3-195:7-204)
10 20 30 40 50
pF1KB5 MAAIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELA
:. : ::::::: ::::::. ...: ::: ::::::..:.... : ::: :.
CCDS33 MAHGPGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLG
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB5 LWDTAGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVA
:.::::::::::::::::: :::.:.:::: .: :..:. :.::::.:.. ::::..:..
CCDS33 LYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIG
70 80 90 100 110 120
120 130 140 150 160 170
pF1KB5 NKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAKTKEGVREVFETATR
.. :::.: .. ..: ::..:. ...:. .: .: : :.:::: :..:.. ::. :
CCDS33 TQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAII
130 140 150 160 170 180
180 190
pF1KB5 AAL-------QKRYGSQNGCINCCKVL
: : .:: ::. ::::: .
CCDS33 AILTPKKHTVKKRIGSR--CINCCLIT
190 200
>>CCDS11798.1 RAC3 gene_id:5881|Hs108|chr17 (192 aa)
initn: 706 init1: 681 opt: 687 Z-score: 799.0 bits: 154.6 E(32554): 3.5e-38
Smith-Waterman score: 687; 58.1% identity (77.7% similar) in 179 aa overlap (1-179:1-177)
10 20 30 40 50 60
pF1KB5 MAAIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDT
: :: : ::::::: ::::::: .. . :: :.::::.:: :.. :::: :.:.::::
CCDS11 MQAI--KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDT
10 20 30 40 50
70 80 90 100 110 120
pF1KB5 AGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKD
:::::::::::::::.:::.:.:::. :: :.::. :: :::.: ::..::.::..: :
CCDS11 AGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPHTPILLVGTKLD
60 70 80 90 100 110
130 140 150 160 170 180
pF1KB5 LRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAKTKEGVREVFETATRAALQ
::.:. . .: : :. .: ::: .: . :::::: :..:.. ::. : ::.:
CCDS11 LRDDKDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVFDEAIRAVLC
120 130 140 150 160 170
190
pF1KB5 KRYGSQNGCINCCKVL
CCDS11 PPPVKKPGKKCTVF
180 190
>>CCDS13945.1 RAC2 gene_id:5880|Hs108|chr22 (192 aa)
initn: 719 init1: 676 opt: 684 Z-score: 795.6 bits: 154.0 E(32554): 5.4e-38
Smith-Waterman score: 684; 55.0% identity (75.9% similar) in 191 aa overlap (1-189:1-189)
10 20 30 40 50 60
pF1KB5 MAAIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDT
: :: : ::::::: ::::::: .. . :: :.::::.:: :.. ::.: :.:.::::
CCDS13 MQAI--KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDSKPVNLGLWDT
10 20 30 40 50
70 80 90 100 110 120
pF1KB5 AGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKD
:::::::::::::::.:::.:.:::. :: : ::. :: :::.: ::..:::::..: :
CCDS13 AGQEDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPIILVGTKLD
60 70 80 90 100 110
130 140 150 160 170
pF1KB5 LRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAKTKEGVREVFETATRAAL-
::.:. . .: . : :. .: :.: .:.. :::::: :..:.. ::. : ::.:
CCDS13 LRDDKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVFDEAIRAVLC
120 130 140 150 160 170
180 190
pF1KB5 -QKRYGSQNGCINCCKVL
: .. .:
CCDS13 PQPTRQQKRACSLL
180 190
>>CCDS7748.1 RHOG gene_id:391|Hs108|chr11 (191 aa)
initn: 670 init1: 670 opt: 674 Z-score: 784.1 bits: 151.9 E(32554): 2.3e-37
Smith-Waterman score: 674; 56.6% identity (79.8% similar) in 173 aa overlap (7-179:5-177)
10 20 30 40 50 60
pF1KB5 MAAIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDT
: ::::::: ::::::: .. . ::. :.::::.:: :. :::. :.: ::::
CCDS77 MQSIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYSAQSAVDGRTVNLNLWDT
10 20 30 40 50
70 80 90 100 110 120
pF1KB5 AGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKD
::::.::::: ::::.:.:...:::. :: : ::. .:: ::: : ::.:::.::..:::
CCDS77 AGQEEYDRLRTLSYPQTNVFVICFSIASPPSYENVRHKWHPEVCHHCPDVPILLVGTKKD
60 70 80 90 100 110
130 140 150 160 170 180
pF1KB5 LRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAKTKEGVREVFETATRAALQ
::.. . .: .. : :. ..:.:.: .:.: :::::: ..::.::: :.::.:
CCDS77 LRAQPDTLRRLKEQGQAPITPQQGQALAKQIHAVRYLECSALQQDGVKEVFAEAVRAVLN
120 130 140 150 160 170
190
pF1KB5 KRYGSQNGCINCCKVL
CCDS77 PTPIKRGRSCILL
180 190
>>CCDS221.1 CDC42 gene_id:998|Hs108|chr1 (191 aa)
initn: 676 init1: 657 opt: 661 Z-score: 769.2 bits: 149.1 E(32554): 1.6e-36
Smith-Waterman score: 661; 54.0% identity (80.5% similar) in 174 aa overlap (7-180:5-178)
10 20 30 40 50 60
pF1KB5 MAAIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDT
: ::::::: ::::::: .. ..:: ::::::.::.. . . :. :.:.::
CCDS22 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDT
10 20 30 40 50
70 80 90 100 110 120
pF1KB5 AGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKD
:::::::::::::::.:::.:.:::: ::.:.::. ::::::. : ::..:..::... :
CCDS22 AGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQID
60 70 80 90 100 110
130 140 150 160 170 180
pF1KB5 LRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAKTKEGVREVFETATRAALQ
::.: . .::. ::.:. . .. .: ..: :.:::: :..:...::. : :::.
CCDS22 LRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALE
120 130 140 150 160 170
190
pF1KB5 KRYGSQNGCINCCKVL
CCDS22 PPEPKKSRRCVLL
180 190
196 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 16:13:36 2016 done: Thu Nov 3 16:13:36 2016
Total Scan time: 1.600 Total Display time: -0.020
Function used was FASTA [36.3.4 Apr, 2011]