Result of FASTA (omim) for
pF1KB5147
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB5147, 354 aa
1>>>pF1KB5147 354 - 354 aa - 354 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.1251+/-0.00036; mu= 16.9363+/- 0.022
mean_var=62.6988+/-12.693, 0's: 0 Z-trim(113.2): 20 B-trim: 0 in 0/52
Lambda= 0.161974
statistics sampled from 22402 (22417) to 22402 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.644), E-opt: 0.2 (0.263), width: 16
Scan time: 8.200
The best scores are: opt bits E(85289)
NP_001163 (OMIM: 107830) arginase-2, mitochondrial ( 354) 2340 555.5 6.3e-158
NP_000036 (OMIM: 207800,608313) arginase-1 isoform ( 322) 1336 320.9 2.5e-87
NP_001231367 (OMIM: 207800,608313) arginase-1 isof ( 330) 1317 316.4 5.5e-86
XP_011534103 (OMIM: 207800,608313) PREDICTED: argi ( 237) 540 134.8 1.9e-31
>>NP_001163 (OMIM: 107830) arginase-2, mitochondrial pre (354 aa)
initn: 2340 init1: 2340 opt: 2340 Z-score: 2956.2 bits: 555.5 E(85289): 6.3e-158
Smith-Waterman score: 2340; 100.0% identity (100.0% similar) in 354 aa overlap (1-354:1-354)
10 20 30 40 50 60
pF1KB5 MSLRGSLSRLLQTRVHSILKKSVHSVAVIGAPFSQGQKRKGVEHGPAAIREAGLMKRLSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MSLRGSLSRLLQTRVHSILKKSVHSVAVIGAPFSQGQKRKGVEHGPAAIREAGLMKRLSS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 LGCHLKDFGDLSFTPVPKDDLYNNLIVNPRSVGLANQELAEVVSRAVSDGYSCVTLGGDH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LGCHLKDFGDLSFTPVPKDDLYNNLIVNPRSVGLANQELAEVVSRAVSDGYSCVTLGGDH
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB5 SLAIGTISGHARHCPDLCVVWVDAHADINTPLTTSSGNLHGQPVSFLLRELQDKVPQLPG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SLAIGTISGHARHCPDLCVVWVDAHADINTPLTTSSGNLHGQPVSFLLRELQDKVPQLPG
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB5 FSWIKPCISSASIVYIGLRDVDPPEHFILKNYDIQYFSMRDIDRLGIQKVMERTFDLLIG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FSWIKPCISSASIVYIGLRDVDPPEHFILKNYDIQYFSMRDIDRLGIQKVMERTFDLLIG
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB5 KRQRPIHLSFDIDAFDPTLAPATGTPVVGGLTYREGMYIAEEIHNTGLLSALDLVEVNPQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KRQRPIHLSFDIDAFDPTLAPATGTPVVGGLTYREGMYIAEEIHNTGLLSALDLVEVNPQ
250 260 270 280 290 300
310 320 330 340 350
pF1KB5 LATSEEEAKTTANLAVDVIASSFGQTREGGHIVYDQLPTPSSPDESENQARVRI
::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LATSEEEAKTTANLAVDVIASSFGQTREGGHIVYDQLPTPSSPDESENQARVRI
310 320 330 340 350
>>NP_000036 (OMIM: 207800,608313) arginase-1 isoform 2 [ (322 aa)
initn: 1353 init1: 1110 opt: 1336 Z-score: 1688.9 bits: 320.9 E(85289): 2.5e-87
Smith-Waterman score: 1336; 60.1% identity (85.4% similar) in 316 aa overlap (25-340:7-321)
10 20 30 40 50 60
pF1KB5 MSLRGSLSRLLQTRVHSILKKSVHSVAVIGAPFSQGQKRKGVEHGPAAIREAGLMKRLSS
....::::::.:: : :::.::...:.:::...:.
NP_000 MSAKSRTIGIIGAPFSKGQPRGGVEEGPTVLRKAGLLEKLKE
10 20 30 40
70 80 90 100 110 120
pF1KB5 LGCHLKDFGDLSFTPVPKDDLYNNLIVNPRSVGLANQELAEVVSRAVSDGYSCVTLGGDH
: .::.::: :. .:.:. .. .. :::::: :...:: :... ..: ..:::::
NP_000 QECDVKDYGDLPFADIPNDSPFQ-IVKNPRSVGKASEQLAGKVAEVKKNGRISLVLGGDH
50 60 70 80 90 100
130 140 150 160 170 180
pF1KB5 SLAIGTISGHARHCPDLCVVWVDAHADINTPLTTSSGNLHGQPVSFLLRELQDKVPQLPG
:::::.:::::: ::: :.:::::.::::::::.:::::::::::::.::. :.:..::
NP_000 SLAIGSISGHARVHPDLGVIWVDAHTDINTPLTTTSGNLHGQPVSFLLKELKGKIPDVPG
110 120 130 140 150 160
190 200 210 220 230 240
pF1KB5 FSWIKPCISSASIVYIGLRDVDPPEHFILKNYDIQYFSMRDIDRLGIQKVMERTFDLLIG
:::. ::::. .::::::::::: ::.:::. :.:::: ..::::: ::::.:.. :.:
NP_000 FSWVTPCISAKDIVYIGLRDVDPGEHYILKTLGIKYFSMTEVDRLGIGKVMEETLSYLLG
170 180 190 200 210 220
250 260 270 280 290 300
pF1KB5 KRQRPIHLSFDIDAFDPTLAPATGTPVVGGLTYREGMYIAEEIHNTGLLSALDLVEVNPQ
...::::::::.:..::...::::::::::::::::.::.:::..:::::.::..::::.
NP_000 RKKRPIHLSFDVDGLDPSFTPATGTPVVGGLTYREGLYITEEIYKTGLLSGLDIMEVNPS
230 240 250 260 270 280
310 320 330 340 350
pF1KB5 LATSEEEAKTTANLAVDVIASSFGQTREGGHIVYDQLPTPSSPDESENQARVRI
:. . ::. :.: :: . . :: .:::.: : : :
NP_000 LGKTPEEVTRTVNTAVAITLACFGLAREGNHKPIDYLNPPK
290 300 310 320
>>NP_001231367 (OMIM: 207800,608313) arginase-1 isoform (330 aa)
initn: 1322 init1: 1110 opt: 1317 Z-score: 1664.7 bits: 316.4 E(85289): 5.5e-86
Smith-Waterman score: 1317; 59.0% identity (83.6% similar) in 324 aa overlap (25-340:7-329)
10 20 30 40 50 60
pF1KB5 MSLRGSLSRLLQTRVHSILKKSVHSVAVIGAPFSQGQKRKGVEHGPAAIREAGLMKRLSS
....::::::.:: : :::.::...:.:::...:.
NP_001 MSAKSRTIGIIGAPFSKGQPRGGVEEGPTVLRKAGLLEKLKE
10 20 30 40
70 80 90 100 110
pF1KB5 --------LGCHLKDFGDLSFTPVPKDDLYNNLIVNPRSVGLANQELAEVVSRAVSDGYS
: : .::.::: :. .:.:. .. .. :::::: :...:: :... ..:
NP_001 QVTQNFLILECDVKDYGDLPFADIPNDSPFQ-IVKNPRSVGKASEQLAGKVAEVKKNGRI
50 60 70 80 90 100
120 130 140 150 160 170
pF1KB5 CVTLGGDHSLAIGTISGHARHCPDLCVVWVDAHADINTPLTTSSGNLHGQPVSFLLRELQ
..::::::::::.:::::: ::: :.:::::.::::::::.:::::::::::::.::.
NP_001 SLVLGGDHSLAIGSISGHARVHPDLGVIWVDAHTDINTPLTTTSGNLHGQPVSFLLKELK
110 120 130 140 150 160
180 190 200 210 220 230
pF1KB5 DKVPQLPGFSWIKPCISSASIVYIGLRDVDPPEHFILKNYDIQYFSMRDIDRLGIQKVME
:.:..:::::. ::::. .::::::::::: ::.:::. :.:::: ..::::: ::::
NP_001 GKIPDVPGFSWVTPCISAKDIVYIGLRDVDPGEHYILKTLGIKYFSMTEVDRLGIGKVME
170 180 190 200 210 220
240 250 260 270 280 290
pF1KB5 RTFDLLIGKRQRPIHLSFDIDAFDPTLAPATGTPVVGGLTYREGMYIAEEIHNTGLLSAL
.:.. :.:...::::::::.:..::...::::::::::::::::.::.:::..:::::.:
NP_001 ETLSYLLGRKKRPIHLSFDVDGLDPSFTPATGTPVVGGLTYREGLYITEEIYKTGLLSGL
230 240 250 260 270 280
300 310 320 330 340 350
pF1KB5 DLVEVNPQLATSEEEAKTTANLAVDVIASSFGQTREGGHIVYDQLPTPSSPDESENQARV
:..::::.:. . ::. :.: :: . . :: .:::.: : : :
NP_001 DIMEVNPSLGKTPEEVTRTVNTAVAITLACFGLAREGNHKPIDYLNPPK
290 300 310 320 330
pF1KB5 RI
>>XP_011534103 (OMIM: 207800,608313) PREDICTED: arginase (237 aa)
initn: 820 init1: 524 opt: 540 Z-score: 685.6 bits: 134.8 E(85289): 1.9e-31
Smith-Waterman score: 680; 39.2% identity (60.8% similar) in 316 aa overlap (25-340:7-236)
10 20 30 40 50 60
pF1KB5 MSLRGSLSRLLQTRVHSILKKSVHSVAVIGAPFSQGQKRKGVEHGPAAIREAGLMKRLSS
....::::::.:: : :::.::...:.:::...:.
XP_011 MSAKSRTIGIIGAPFSKGQPRGGVEEGPTVLRKAGLLEKLKE
10 20 30 40
70 80 90 100 110 120
pF1KB5 LGCHLKDFGDLSFTPVPKDDLYNNLIVNPRSVGLANQELAEVVSRAVSDGYSCVTLGGDH
: .::.::: :. .:.:. .. .. :::::: :...:: :... ..: ..:::::
XP_011 QECDVKDYGDLPFADIPNDSPFQ-IVKNPRSVGKASEQLAGKVAEVKKNGRISLVLGGDH
50 60 70 80 90 100
130 140 150 160 170 180
pF1KB5 SLAIGTISGHARHCPDLCVVWVDAHADINTPLTTSSGNLHGQPVSFLLRELQDKVPQLPG
:
XP_011 S-----------------------------------------------------------
190 200 210 220 230 240
pF1KB5 FSWIKPCISSASIVYIGLRDVDPPEHFILKNYDIQYFSMRDIDRLGIQKVMERTFDLLIG
.:::. :.:::: ..::::: ::::.:.. :.:
XP_011 --------------------------YILKTLGIKYFSMTEVDRLGIGKVMEETLSYLLG
110 120 130
250 260 270 280 290 300
pF1KB5 KRQRPIHLSFDIDAFDPTLAPATGTPVVGGLTYREGMYIAEEIHNTGLLSALDLVEVNPQ
...::::::::.:..::...::::::::::::::::.::.:::..:::::.::..::::.
XP_011 RKKRPIHLSFDVDGLDPSFTPATGTPVVGGLTYREGLYITEEIYKTGLLSGLDIMEVNPS
140 150 160 170 180 190
310 320 330 340 350
pF1KB5 LATSEEEAKTTANLAVDVIASSFGQTREGGHIVYDQLPTPSSPDESENQARVRI
:. . ::. :.: :: . . :: .:::.: : : :
XP_011 LGKTPEEVTRTVNTAVAITLACFGLAREGNHKPIDYLNPPK
200 210 220 230
354 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 21:45:41 2016 done: Sat Nov 5 21:45:42 2016
Total Scan time: 8.200 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]