FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB5142, 431 aa
  1>>>pF1KB5142 431 - 431 aa - 431 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.2041+/-0.00031; mu= 6.7697+/- 0.020
 mean_var=184.3026+/-37.245, 0's: 0 Z-trim(122.6): 5  B-trim: 948 in 1/58
 Lambda= 0.094473
 statistics sampled from 40941 (40954) to 40941 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.773), E-opt: 0.2 (0.48), width:  16
 Scan time:  8.750

The best scores are:                                      opt bits E(85289)
NP_001960 (OMIM: 601710) eukaryotic translation in ( 431) 2868 402.6  1e-111
NP_892116 (OMIM: 601710) eukaryotic translation in ( 431) 2868 402.6  1e-111


>>NP_001960 (OMIM: 601710) eukaryotic translation initia  (431 aa)
 initn: 2868 init1: 2868 opt: 2868  Z-score: 2126.7  bits: 402.6 E(85289): 1e-111
Smith-Waterman score: 2868; 100.0% identity (100.0% similar) in 431 aa overlap (1-431:1-431)

               10        20        30        40        50        60
pF1KB5 MSVNVNRSVSDQFYRYKMPRLIAKVEGKGNGIKTVIVNMVDVAKALNRPPTYPTKYFGCE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MSVNVNRSVSDQFYRYKMPRLIAKVEGKGNGIKTVIVNMVDVAKALNRPPTYPTKYFGCE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 LGAQTQFDVKNDRYIVNGSHEANKLQDMLDGFIKKFVLCPECENPETDLHVNPKKQTIGN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LGAQTQFDVKNDRYIVNGSHEANKLQDMLDGFIKKFVLCPECENPETDLHVNPKKQTIGN
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB5 SCKACGYRGMLDTHHKLCTFILKNPPENSDSGTGKKEKEKKNRKGKDKENGSVSSSETPP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SCKACGYRGMLDTHHKLCTFILKNPPENSDSGTGKKEKEKKNRKGKDKENGSVSSSETPP
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB5 PPPPPNEINPPPHTMEEEEDDDWGEDTTEEAQRRRMDEISDHAKVLTLSDDLERTIEERV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PPPPPNEINPPPHTMEEEEDDDWGEDTTEEAQRRRMDEISDHAKVLTLSDDLERTIEERV
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB5 NILFDFVKKKKEEGVIDSSDKEIVAEAERLDVKAMGPLVLTEVLFNEKIREQIKKYRRHF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NILFDFVKKKKEEGVIDSSDKEIVAEAERLDVKAMGPLVLTEVLFNEKIREQIKKYRRHF
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB5 LRFCHNNKKAQRYLLHGLECVVAMHQAQLISKIPHILKEMYDADLLEEEVIISWSEKASK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LRFCHNNKKAQRYLLHGLECVVAMHQAQLISKIPHILKEMYDADLLEEEVIISWSEKASK
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB5 KYVSKELAKEIRVKAEPFIKWLKEAEEESSGGEEEDEDENIEVVYSKAASVPKVETVKSD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KYVSKELAKEIRVKAEPFIKWLKEAEEESSGGEEEDEDENIEVVYSKAASVPKVETVKSD
              370       380       390       400       410       420

              430 
pF1KB5 NKDDDIDIDAI
       :::::::::::
NP_001 NKDDDIDIDAI
              430 

>>NP_892116 (OMIM: 601710) eukaryotic translation initia  (431 aa)
 initn: 2868 init1: 2868 opt: 2868  Z-score: 2126.7  bits: 402.6 E(85289): 1e-111
Smith-Waterman score: 2868; 100.0% identity (100.0% similar) in 431 aa overlap (1-431:1-431)

               10        20        30        40        50        60
pF1KB5 MSVNVNRSVSDQFYRYKMPRLIAKVEGKGNGIKTVIVNMVDVAKALNRPPTYPTKYFGCE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_892 MSVNVNRSVSDQFYRYKMPRLIAKVEGKGNGIKTVIVNMVDVAKALNRPPTYPTKYFGCE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 LGAQTQFDVKNDRYIVNGSHEANKLQDMLDGFIKKFVLCPECENPETDLHVNPKKQTIGN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_892 LGAQTQFDVKNDRYIVNGSHEANKLQDMLDGFIKKFVLCPECENPETDLHVNPKKQTIGN
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB5 SCKACGYRGMLDTHHKLCTFILKNPPENSDSGTGKKEKEKKNRKGKDKENGSVSSSETPP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_892 SCKACGYRGMLDTHHKLCTFILKNPPENSDSGTGKKEKEKKNRKGKDKENGSVSSSETPP
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB5 PPPPPNEINPPPHTMEEEEDDDWGEDTTEEAQRRRMDEISDHAKVLTLSDDLERTIEERV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_892 PPPPPNEINPPPHTMEEEEDDDWGEDTTEEAQRRRMDEISDHAKVLTLSDDLERTIEERV
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB5 NILFDFVKKKKEEGVIDSSDKEIVAEAERLDVKAMGPLVLTEVLFNEKIREQIKKYRRHF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_892 NILFDFVKKKKEEGVIDSSDKEIVAEAERLDVKAMGPLVLTEVLFNEKIREQIKKYRRHF
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB5 LRFCHNNKKAQRYLLHGLECVVAMHQAQLISKIPHILKEMYDADLLEEEVIISWSEKASK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_892 LRFCHNNKKAQRYLLHGLECVVAMHQAQLISKIPHILKEMYDADLLEEEVIISWSEKASK
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB5 KYVSKELAKEIRVKAEPFIKWLKEAEEESSGGEEEDEDENIEVVYSKAASVPKVETVKSD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_892 KYVSKELAKEIRVKAEPFIKWLKEAEEESSGGEEEDEDENIEVVYSKAASVPKVETVKSD
              370       380       390       400       410       420

              430 
pF1KB5 NKDDDIDIDAI
       :::::::::::
NP_892 NKDDDIDIDAI
              430 




431 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 06:21:20 2016 done: Sat Nov  5 06:21:21 2016
 Total Scan time:  8.750 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]